rna9135, rna9135 (mRNA) Nannochloropsis gaditana

Overview
Namerna9135
Unique Namerna9135
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1107
Alignment locationKK037251.1:413006..413725 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100012g88.1947.mrna
Orig protein idgnl|cribi|Naga_100012g88.1947
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:413006..413725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g88gene8858Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9135rna9135-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21615.1cds9105Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9135 ID=rna9135|Name=rna9135|organism=Nannochloropsis gaditana|type=mRNA|length=1107bp
GAACACTTTTTGAAGCTTAAATTTTCAACTCCGTACAGGACAGAACAGGA
ATCTTCTCACAGAATGCCGCAACGTGTGACAAGGCGGACTTGCCAAAGTT
TCTCATCAGTTGCCTTCCTCGTCCGCCGTGCTTCTCCCTCTTTCCTTCGA
GCAAATTGCTGCCAACCTCCCCGCCATGCCTGTACTGCTTTCTTACGCAC
CCGTCATTCCACCTACGGCGTACGCATGCGACCAATAAAATGGCTTTCCA
CTCGAGCAAAGAACTGTCGAATTGTAAACAGGAAGGAGTATTCCTTTTCT
TTTTCAGGCGCCGGGTTCCTATCCCCTTTTCACATCGGTGTGGTGCAAGC
CTTACAAGAGGAAGGTCTCCTCACGAAGAAATCCAAGCTTGCAGGCGCCT
CCGGTGGGGCCTTGGTGGCAGCCTCCACTGTGTGCGGCATCTCGCCGTCC
GAGCAGATGCTAGCCTACAAGGAGATCACCAGGTCCTGCCGCACTGCGGG
ATTCCTTGGCAGAGTTCGCGGCACGCTGCTTGAGAGTCTGGAGGCAGGCT
TGCCCCCCAACGCCCACGACTTAGCGAACGAAAGCCTCACAGTCGCGGTT
ATGCGCATCTGGCCCACTTTTCAGCTACAGCCGGAGCTTCTCCATCATTT
TCACTCCCGGCAAGACCTGCTGGACTCCCTCCTGGCCTCCTCCCACCTTC
CCTTGTACTTGGACTCTGCTCAGCCCTTCTGGACACGCTTTCGCGCGGGC
CTGTACGTGGACGGGGGCCTAATCGACCTCGTCCCGCCGGTTCCCGACGC
TATCAAGGTATGCGTCTTGCCAGGTCACTTCCTATTCCGTGACGACTTGC
ACGTGACGCCCCACTTGCTTGGAAGCACGTACCCGTTTTCTTTGCAACAA
ACCATGCAGTGGGCCTTTGTGGCGCCTCCCGATGATGTCGCTGATGAGTT
GCTGAGGATGGGCCACCAAGCGGCGATAAAGTGGGTCCAATCGGGATGCA
TCCAGGAAAGTCGAGGAATTGATGCATCTGCGGAAGAGGGAAACAATTGA
TCGGATTGATGCTCGTTCATAATATACCCCTTTTGCCAACCATAAGTTTG
CTTCTGC
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protein sequence of rna9135

>rna9135-protein ID=rna9135-protein|Name=rna9135|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MTRAHRGDPEAEKAREYDATEGEEDEHEGRAWVVGSGHYQLVGKGAQAAK
RGSSLSNGTSGTANERRGAHKAMSSDGYAASAASFAALHAAAGAFATTEA
GAEPGFSRGQRPVSAMIRLSLDHPSRSPLHLVTPSPQIGGNRSLAKAERY
AEKGMLADLLKGRPREKIKKVGLTHSVNTNTTTTIMYVWIFTMPSSRNIA
HIGYEG
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mRNA from alignment at KK037251.1:413006..413725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9135 ID=rna9135|Name=rna9135|organism=Nannochloropsis gaditana|type=mRNA|length=720bp|location=Sequence derived from alignment at KK037251.1:413006..413725+ (Nannochloropsis gaditana)
ATGACAAGGGCACACCGGGGAGATCCAGAGGCCGAGAAAGCACGGGAATA
CGACGcaacggagggcgaggaagacgagcacGAAGGCCGGGCGTGGGTAG
TGGGGAGCGGGCACTACCAGCTGGTTGGGAAAGGGGCCCAAGCTGCCAAA
CGGGGATCAAGCCTTTCCAATGGAACCTCTGGCACTGCCAATGAACGGCG
CGGTGCTCATAAGGCCATGTCTTCGGATGGATACGCTGCTTCGGCAGCAT
CTTTTGCCGCATTACATGCTGCGGCCGGGGCCTTTGCGACAACTGAAGCA
GGCGCGGAGCCTGGGTTCTCAAGAGGGCAAAGGCCGGTATCCGCAATGAT
CCGCCTTAGTCTGGATCATCCCAGTCGCTCTCCGCTTCACTTGGTCACGC
CTTCGCCACAGATCGGAGGGAACAGAAGCCTGGCGAAGGCCGAAAGATAT
GCAGAAAAGGGAATGTTGGCAGACCTGTGACGAGGTCACGGGGGCTGTGC
TCATTCCTGACAAGGAGCGGCAAGCACGGGCGAGGCCTCGCCTTTGAACG
CGTGCATTAAAAGAGTGACGGCAAGACTCAAAGGCCGGCCAAGGGAGAAA
ATAAAGAAAGTGGGATTGACTCACTCTGTGAATACAAACACGACCACGAC
GATCATGTATGTATGGATTTTCACAATGCCAAGCTCCCGAAATATAGCTC
ACATTGGGTACGAAGGATAA
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Coding sequence (CDS) from alignment at KK037251.1:413006..413725+

>rna9135 ID=rna9135|Name=rna9135|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at KK037251.1:413006..413725+ (Nannochloropsis gaditana)
ATGACAAGGGCACACCGGGGAGATCCAGAGGCCGAGAAAGCACGGGAATA
CGACGcaacggagggcgaggaagacgagcacGAAGGCCGGGCGTGGGTAG
TGGGGAGCGGGCACTACCAGCTGGTTGGGAAAGGGGCCCAAGCTGCCAAA
CGGGGATCAAGCCTTTCCAATGGAACCTCTGGCACTGCCAATGAACGGCG
CGGTGCTCATAAGGCCATGTCTTCGGATGGATACGCTGCTTCGGCAGCAT
CTTTTGCCGCATTACATGCTGCGGCCGGGGCCTTTGCGACAACTGAAGCA
GGCGCGGAGCCTGGGTTCTCAAGAGGGCAAAGGCCGGTATCCGCAATGAT
CCGCCTTAGTCTGGATCATCCCAGTCGCTCTCCGCTTCACTTGGTCACGC
CTTCGCCACAGATCGGAGGGAACAGAAGCCTGGCGAAGGCCGAAAGATAT
GCAGAAAAGGGAATGTTGGCAGACCTACTCAAAGGCCGGCCAAGGGAGAA
AATAAAGAAAGTGGGATTGACTCACTCTGTGAATACAAACACGACCACGA
CGATCATGTATGTATGGATTTTCACAATGCCAAGCTCCCGAAATATAGCT
CACATTGGGTACGAAGGATAAATGACAAGGGCACACCGGGGAGATCCAGA
GGCCGAGAAAGCACGGGAATACGACGcaacggagggcgaggaagacgagc
acGAAGGCCGGGCGTGGGTAGTGGGGAGCGGGCACTACCAGCTGGTTGGG
AAAGGGGCCCAAGCTGCCAAACGGGGATCAAGCCTTTCCAATGGAACCTC
TGGCACTGCCAATGAACGGCGCGGTGCTCATAAGGCCATGTCTTCGGATG
GATACGCTGCTTCGGCAGCATCTTTTGCCGCATTACATGCTGCGGCCGGG
GCCTTTGCGACAACTGAAGCAGGCGCGGAGCCTGGGTTCTCAAGAGGGCA
AAGGCCGGTATCCGCAATGATCCGCCTTAGTCTGGATCATCCCAGTCGCT
CTCCGCTTCACTTGGTCACGCCTTCGCCACAGATCGGAGGGAACAGAAGC
CTGGCGAAGGCCGAAAGATATGCAGAAAAGGGAATGTTGGCAGACCTACT
CAAAGGCCGGCCAAGGGAGAAAATAAAGAAAGTGGGATTGACTCACTCTG
TGAATACAAACACGACCACGACGATCATGTATGTATGGATTTTCACAATG
CCAAGCTCCCGAAATATAGCTCACATTGGGTACGAAGGATAA
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Synonyms
Publications