rna9117, rna9117 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9117
Unique Name	rna9117
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2279
Alignment location	KK037251.1:373214..375108 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100012g68.1946.mrna
Orig protein id	gnl\|cribi\|Naga_100012g68.1946
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:373214..375108 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g68	gene8840	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9117	rna9117-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21614.1	cds9087	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:373214..375108-
coding sequence from alignment at KK037251.1:373214..375108-

mRNA sequence

>rna9117 ID=rna9117|Name=rna9117|organism=Nannochloropsis gaditana|type=mRNA|length=2279bp
GGCAAAAACCCGCGAGGCTGTCCCCGCCCCTTTGCCAAGCGCCTTTTCTC
CCCCATACAATTGTACAGTGGCATGGAAGGAAGGGCGCATCTACGCAGAG
GTTTAAAATATGGAACCCGTGGATTATCACAGAAAGGCATCGGGGATCCA
CCTTCTGGTTTTGCGTCGAGATCAGCCCGTCGTCCTTGCCCTCGCCAACC
TCCTCGAAAAAGGTCTTCACCAATTCATACCACCACCCTCAACTCGGAGG
CGTACCAATCTTCAAATCCGTACCGGGCTATAAGGGGCAAGGCTGCATTC
GGAAATACCATCGATGTCCATACCCATTTGTACCTGCCTGGATACATGGA
TTTGCTGAGACGCCGGGCAGAGGTTCCGCGGATCATTCCCGCCCCGCCAG
GGAGCGCATCGGACGCGCCCGAGCGCCTTCTGATATTGCCAGGAGAGGAT
GCCGACGAAAGTACATCATCTGGTCGTCCAATTGGTAGAGAGTACTGGAG
TGTCGAGAAGAAGCTGTCTTTCATGGATGTACACGGCATACAAACTAGTG
TCCTCTCCCCCGCCAATCCCTGGCTGGACTTCCTGCCCCCCTTGGACGCC
CTCCGAGTCGCCCAAGACCTCAATGACGAGCTTCACGCAATCTGCTCCTC
CTCCTACCCGGCCCCCCCGTCCTTCCCTTCTTCAGCCCCTGTTCCCCGCT
TCCTCTGCTTCGGATTCCTCCCCCTGCATCCTCTATTTCAGTCCTCCCAA
TTACTTCCCGCCATCGTCCGGGAACTCGAGCGGCTTGCCACCCCCCCCCT
TTCCTCCACCATGCGTGGCGTGATACTGCCCGCGCAGCACTTGGACCACC
CGCTCATGGATGGCGTGTACGAGGCCTGTCAGCGGCTAGGGCTGGTGCTT
TTTATTCACCCGCACTACGGCGTCGGGAAAGGGTCAGAGGTGAACGGGGA
CTACGGGCACGTCCTCCCCCTCGCCCTGGGCTTCCCCTTCGAGACCTCCG
TGGCGGCCGCGCGTCTCCTGCTCTCGGGGTACCTGGACCGATATCCTGAC
CTACGAGTCCTTCTGGCGCACTCGGGAGGTACTTTGCCTTTCCTTGCTGG
ACGCTTGGACTGTTGCGTGGCCCATGACCCGGCATTTGTGTGGGGAAGGG
GGGGAAGAAAGGGTGGAAAATTAAAGCACTCGCCCTCGCTGTATCTGCGG
CGTAATTTCTTCTTCGACAACGTAGTATATCATCAGGCGGGCTGTCAGTG
CCTAAGAGCGCTCCTGGGCGAGGCTGGGAAAGACAGGGTCATGTGGGGCT
CTGACCATCCGTTCTTCCCCCCGGTGGACGCGGCTGAGGGGGAAGGAAGC
CGTCAGAGGCCCTGGCCTTCCGCAATGAAAAATTATGAAATTTTATGGGG
AGAGGGGACGTCCACTGACGAAGTAAAAGAAGGAGCAAAGGAGGAGAAAT
GGCGGGAAGGGGTGCTATGGAGAAATGCGAGCAAGCTGCTGTGTATTCCC
ACTGCTACCGGAGAGAGGGAGGGAAGGGAGTAGGAGAGGGCAAAGGGATG
GAGGCCCCATGCGGAGCTAAGAGGCGGATGCCGTGAGCAAGTCGAAGCCA
AGATGATGAGAGGGCTGGAATGACAGTGGGAGTGTGACGGCGCGAACGAG
TCAAAGCGAATCCAGACTGTGTGGCTGTCGGCAATTCAAAGAAAGAGCAC
GCAAATGGAGATTTCGGAAATGAAGGGACCGAATCGCAAAATCAGCGAAT
GCAATTACTGCAACGTACGTATTTATATCCAGCACTGTGCCCTTTACCGG
GATACATTCGAGACTTTCATGCTCTACTCCCTATCACACGCATGCTTTTC
GTTCGCCTTACCGACCGCTCTTGCCCTCCATCATTAGCCCCGGCGAGGCC
GAACGGCCACTGAACTGTACAATGCACCAGAAAAAATGTTCCAGCATAAG
CGATAAATCTTATTGAAAAAACGCAGCACTCAAGCCTGTGTTGCCGTCCT
CCTATGCCTCTCCTATTACCCCATAACTATGCAGGCTCACCACGACTTAC
CCGCGCAAGAACGCCGCCGCCTCTTTCACAGCCTCTATACTCGCCAGCAC
GCTTCCGTGTGCGCCCACTGGTGCCTCGAGCTCAACAAATAGCAGATCCA
TGGCTGCATCGTCTCCCTCTCCGCCCCCCCCGGTCCCCGACAGCTCCTGC
TGTCCTCTTTCTATCCTGAACAACGAGATTCGTACACCCTCTGTCAGCTG
GCACCTGATCCCGCGCTTCAAAAGTTCCC

protein sequence of rna9117

>rna9117-protein ID=rna9117-protein|Name=rna9117|organism=Nannochloropsis gaditana|type=polypeptide|length=277bp
METSCDERCAVIQGISHRSELPKLLSFLRAACLDPLLQESWVSREKVLAP
ASIDRRRRAVTLRDEFIERVSSSTESPHLHLRLKGSCRQQNGGSTGFEGG
AGLGGRRGMKGRERTQRVLMYEERDVRSSAEVLIRHRITTPVYGEDVAGE
EPEEDGGAGRGAGAKKERATTTVARAEVARNQEEGAFETFLRFQGCSVQS
RELLKRGIRCQLTEGVRISLFRIERGQQELSGTGGGGEGDDAAMDLLFVE
LEAPVGAHGSVLASIEAVKEAAAFLRG

mRNA from alignment at KK037251.1:373214..375108-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9117 ID=rna9117|Name=rna9117|organism=Nannochloropsis gaditana|type=mRNA|length=1895bp|location=Sequence derived from alignment at KK037251.1:373214..375108- (Nannochloropsis gaditana)
TCTTGCCCCTTCTCGTCCTCTCAGTCTTGGCGATCCTCCTTGGCCGGGAA
ACGCCGTGCGTCGCTGCACCAGGTGTTGTAATAGCACATGAGAAACACGA
ATGTAAAGTGGCCTGAACGAGCTCCTCTATCGTCATAGTCACACTATTTG
GAATTAAGGCTCGACAGCACTCTGACAGGCTATCCCCGCAGCTTAACCTC
CCGATCCTAATATAATAAATAATGAGAGATATTATACCACAAGTCCTTCA
AATAACCCTGCAACATACTTCGGGCTTCCACGATGTACTATATAAACACA
TGCAACGGAGAGAATCGTATGACTGCCATCGTCCAGGAGCCTCAAATGAA
GAAATGATGCTCCAGGACTCCTTCACTTCCCCCGCATCATATTCTACCAC
AAGGCAAAAGTTGAAAAGGCTTTGAACTTGATGAGAGATTGAGCATTTAT
GTCTTATCCTATTTTCAAAGCGCAAATACAGATATCAATCATTTTTCAAA
CATGTTCATGTGCTCTAGGCTGCGCTACGCATTCTGCTGCTGCTACAGCT
GCGACGAGTAAAAGTCACGGCTCTAGTCACCATTCGACCCCATCTGCAGT
CTCGCTCGCTATCTATCCGTGTATCGGCCGGGATTGTAATGGAAACCAGT
TGCGACGAGCGTTGTGCCGTCATACAGGGAATCTCGGTACGTAATGCCGC
TCTCACCCGGAAATAGTGAGAGTCACATGTATTCCAGTAAGGGAGCAGCA
CTTTCACGGCTCATGGTCCTCAATGGGTTTCTCAATCACCACATGAATCA
CACATTCTCACAGCACCGCAGCGAACTCCCCAAACTGCTCTCATTTTTGC
GGGCCGCATGCCTGGACCCTCTTCTCCAAGAGTCGTGGGTAAGCAGAGAA
AAGGTGCTGGCACCGGCCTCGATCGATAGAAGGCGGCGTGCTGTGACTCT
ACGGGACGAGTTTATTGAACGCGTAAGCAGCAGTACTGAAAGTCCGCACT
TGCATTTACGCTTGAAGGGATCTTGTCGGCAACAAAACGGAGGCAGTACA
GGTTTTGAGGGGGGAGCAGGGTTGGGAGGGCGGAGAGGGATGAAGGGGCG
GGAGAGGACCCAGCGTGTCTTAATGTACGAGGAGAGAGACGTGCGTTCTA
GTGCGGAGGTGCTGATTCGACACCGGATTACGACGCCTGTTTACGGGGAG
GACGTGGCGGGTGAAGAGCCGGAGGAGGATGGTGGGGCTGGGAGGGGAGC
CGGGGCGAAAAAGGAAAGAGCAACCACGACAGTCGCGCGAGCGGAAGTCG
CTCGTAACCAAGAAGAAGGGGCCTTCGAGACTTTTCTTCGTTTCCAAGGA
TGTAGTGTGCAGTCTAGGGAACTTTTGAAGCGCGGGATCAGGTGCCAGCT
GACAGAGGGTGTACGAATCTCGTTGTTCAGGATAGAAAGAGGACAGCAGG
AGCTGTCGGGGACCGGGGGGGGCGGAGAGGGAGACGATGCAGCCATGGAT
CTGCTATTTGTTGAGCTCGAGGCACCAGTGGGCGCACACGGAAGCGTGCT
GGCGAGTATAGAGGCTGTGAAAGAGGCGGCGGCGTTCTTGCGCGGGTAAG
TCGTGGTGAGCCTGCATAGTTATGGGGTAATAGGAGAGGCATAGGAGGAC
GGCAACACAGGCTTGAGTGCTGCGTTTTTTCAATAAGATTTATCGCTTAT
GCTGGAACATTTTTTCTGGTGCATTGTACAGTTCAGTGGCCGTTCGGCCT
CGCCGGGGCTAATGATGGAGGGCAAGAGCGGTCGGTAAGGCGAACGAAAA
GCATGCGTGTGATAGGGAGTAGAGCATGAAAGTCTCGAATGTATCCCGGT
AAAGGGCACAGTGCTGGATATAAATACGTACGTTGCAGTAATTGC

Coding sequence (CDS) from alignment at KK037251.1:373214..375108-

>rna9117 ID=rna9117|Name=rna9117|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at KK037251.1:373214..375108- (Nannochloropsis gaditana)
CACCGCAGCGAACTCCCCAAACTGCTCTCATTTTTGCGGGCCGCATGCCT
GGACCCTCTTCTCCAAGAGTCGTGGGTAAGCAGAGAAAAGGTGCTGGCAC
CGGCCTCGATCGATAGAAGGCGGCGTGCTGTGACTCTACGGGACGAGTTT
ATTGAACGCGTAAGCAGCAGTACTGAAAGTCCGCACTTGCATTTACGCTT
GAAGGGATCTTGTCGGCAACAAAACGGAGGCAGTACAGGTTTTGAGGGGG
GAGCAGGGTTGGGAGGGCGGAGAGGGATGAAGGGGCGGGAGAGGACCCAG
CGTGTCTTAATGTACGAGGAGAGAGACGTGCGTTCTAGTGCGGAGGTGCT
GATTCGACACCGGATTACGACGCCTGTTTACGGGGAGGACGTGGCGGGTG
AAGAGCCGGAGGAGGATGGTGGGGCTGGGAGGGGAGCCGGGGCGAAAAAG
GAAAGAGCAACCACGACAGTCGCGCGAGCGGAAGTCGCTCGTAACCAAGA
AGAAGGGGCCTTCGAGACTTTTCTTCGTTTCCAAGGATGTAGTGTGCAGT
CTAGGGAACTTTTGAAGCGCGGGATCAGGTGCCAGCTGACAGAGGGTGTA
CGAATCTCGTTGTTCAGGATAGAAAGAGGACAGCAGGAGCTGTCGGGGAC
CGGGGGGGGCGGAGAGGGAGACGATGCAGCCATGGATCTGCTATTTGTTG
AGCTCGAGGCACCAGTGGGCGCACACGGAAGCGTGCTGGCGAGTATAGAG
GCTGTGAAAGAGGCGGCGGCGTTCTTGCGCGGGTAAATGGAAACCAGTTG
CGACGAGCGTTGTGCCGTCATACAGGGAATCTCGCACCGCAGCGAACTCC
CCAAACTGCTCTCATTTTTGCGGGCCGCATGCCTGGACCCTCTTCTCCAA
GAGTCGTGGGTAAGCAGAGAAAAGGTGCTGGCACCGGCCTCGATCGATAG
AAGGCGGCGTGCTGTGACTCTACGGGACGAGTTTATTGAACGCGTAAGCA
GCAGTACTGAAAGTCCGCACTTGCATTTACGCTTGAAGGGATCTTGTCGG
CAACAAAACGGAGGCAGTACAGGTTTTGAGGGGGGAGCAGGGTTGGGAGG
GCGGAGAGGGATGAAGGGGCGGGAGAGGACCCAGCGTGTCTTAATGTACG
AGGAGAGAGACGTGCGTTCTAGTGCGGAGGTGCTGATTCGACACCGGATT
ACGACGCCTGTTTACGGGGAGGACGTGGCGGGTGAAGAGCCGGAGGAGGA
TGGTGGGGCTGGGAGGGGAGCCGGGGCGAAAAAGGAAAGAGCAACCACGA
CAGTCGCGCGAGCGGAAGTCGCTCGTAACCAAGAAGAAGGGGCCTTCGAG
ACTTTTCTTCGTTTCCAAGGATGTAGTGTGCAGTCTAGGGAACTTTTGAA
GCGCGGGATCAGGTGCCAGCTGACAGAGGGTGTACGAATCTCGTTGTTCA
GGATAGAAAGAGGACAGCAGGAGCTGTCGGGGACCGGGGGGGGCGGAGAG
GGAGACGATGCAGCCATGGATCTGCTATTTGTTGAGCTCGAGGCACCAGT
GGGCGCACACGGAAGCGTGCTGGCGAGTATAGAGGCTGTGAAAGAGGCGG
CGGCGTTCTTGCGCGGGTAAATGGAAACCAGTTGCGACGAGCGTTGTGCC
GTCATACAGGGAATCTCG

Synonyms

Publications