rna9116, rna9116 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9116
Unique Name	rna9116
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2969
Alignment location	KK037251.1:371156..373742 +

Link to JBrowse

Properties


Property Name	Value
Product	2-amino-3-carboxymuconate-6-semialdehyde
Orig transcript id	gnl\|cribi\|Naga_100012g67.1911.mrna
Orig protein id	gnl\|cribi\|Naga_100012g67.1911
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:371156..373742 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g67	gene8839	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9116	rna9116-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21579.1	cds9086	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:371156..373742+
coding sequence from alignment at KK037251.1:371156..373742+

mRNA sequence

>rna9116 ID=rna9116|Name=rna9116|organism=Nannochloropsis gaditana|type=mRNA|length=2969bp
AGCATGCGGGCACGCTCGAATTTTCTTAATCTTGGGGTTGCTTGTGTCAT
TTATCCTGTCTTTTTTCGCTTTTCGTTGGTTGTACAGTTTTGAATCATGC
TTGACATCATTACCCTTCTAGCTAATCCTATTTCGGAGAAGGTGTCAAGA
GATTTTGCGAACATTCTTTCTCACATGAAAAGGTCGATAAACCTTCAAAG
TGTTGAATTTGGTCATAGCTTAAATTTCAATACGGACATGAGGTCTTGCT
TGCGAGATTGCATTCGGTATTCCAGGAATTGAGACAAGAACTTATTTTCC
TTTTTCCTTCCCACAGGCAAACATCAACGTTCTGTCTCTTATCAAGTATT
TGTACTTTGTCCAGAACAAGCTAACCACTTGCAATCAGACAATGCATCGC
TACAAACATTTCGCCATACGTGGCATATATGGTCATTGGGGTCATCAAGG
ACAAGGCTATCAAATCATGTCAAGTTCCCTTCGGGTGACACAGTCCCGAT
CCGCCTCCCACGTGCCATCCTCTTCAACCATCCCAAGTTTTACCACCCTC
GTCGAAATGCAACAAAGTGTCGCTAGGACACAGGGTAAAAAGGACTTTTT
GGGCTATAAACCTTGCCCTAGCAGCAAATACAAATGGATTACATACCAGG
CCTTCAATGATATGGTTGGCAAGGCCAAATTTGTGCTACGGGAAGCAGGA
ATTGGTCCTGGGGACAAGGTGGCAGCTCTAAGCGGCAACCGTGTGGAATG
GGCCGTTGGGTGCATGGCGTCACTCAGCCTGGGCGCGACGTGGGTGCCGA
TGTATGAGCAACAGCGACTAACGGAATGCGAGTATATCCTGAGAGACTCG
GGCGCTAAGCTCTTGCTGGTAGGAAGCAGGGAGGCTTACGATAAGACCCG
GCATTTCCTTACGCGCCCTTCTAGGAATCCTGCTTTCGCGCAAGGCGACG
CGCTTTCCGTTATAAATATGCAGGAATCGAAGACTGTATCATCTCTAAAG
GATATTTGGACCTTCGACGTAGATGTTCCTGCTCGCATGGCCCGCGTCAC
TGGGGTAATGACTGCTGAGGCGGACGCCTGCTTTGCCTCTGCGGTCGTTC
GGCCCGACGATGTCGCTGTCCTAATTTACACATCTGGAACTACGGGGACG
CCGAAGGGAGTGGAATTGACTCACAGAAACCTTTGCACTAACATCGAAGG
AATGTGGGAGGTAGTGCGACCTGAGGACATGCCTAATGCCCTCTCTTTGG
CATTTCTGCCGTGGGCGCACAGCATTGGTATGAACTGCGAGCTATTCAAC
ATGATGAGCCGCGGGGCCCGTGTTGCCCTCGCGCAAGATATGACGACCAT
TGCGAGTGACATCAAGGAAGTCCGTCCTAATATCCTGTTCGCAGTACCAA
CACTCTATAAAAAGGTGTATGATCGCATTCAAGATAAAATCACATCGCAA
GGGAAATGGAGTCGGTGGCTGGTTGATAAAGCGGTGGCAGTCGCGGAAAA
AAGACTGGAGATATTGCGAGAAGGAAAACGATTGAGTCTCGGACTACAGG
CCCAATATGAGGTGCTCGACCATATCGTGCTCAGTAAACTTCGAGACACT
TTAGGAGGACGTGTGCGAATTTCGCCAGTGGGCGGGTCCAAGATGAGTTT
ACCAGTCACGCGTTTCTTTGAAGCGGCACTAGGAATAGCTATCTTAGAGG
GCTATGGCTTATCGGAGACCAGCCCACTCTTGAGCATAAGCCGACCAGAC
ATCCAAATTCGCCGCCTAGGGTCTGTCGGACAAGCAGTGAAGGGAGCGGA
ACTGGCCGTTGTGCGTGACGGGTTGCGTGTGCCAGAGGGTGAGGAAGGAG
AGATCTGGGCGTCCGGGCCCATGGTCTTCAAAGGGTACTTGAAGAAAAAA
GAAGAGACTGCGGCTGCATTTGGGGAAATGGACGGGAAAAAGTGGTTTCG
TACCGGTGATTTGGGAACGCTTGAACAAGGATTTCTGACGATTACCGGCC
GTCTGAAAGAACTCTACAAGCTTGAAAATGGCAAATATGTATGTGCGCCT
GTGGTTGAAAAAGCCCTTCTTGAGAGCGAATACATCTTCCAAGTGGTTCT
GTATGGAGCCGATCTTCCTTTCAACACCGCGCTTATTGTTCCCAATTGGG
AAAAGCTCACTGCTTGGTGTGTCAGCAAGAAGCTTCCCGGTTTATCTGCC
TCTTCTAGAAAAACAGAAATTCGGACTCATCCGGAAGTGCAGGCATTCAT
GCGAGAAAATATCGTGCTTGCCTGTAAAGACAAGATGAAAAAGTATGAAA
TGCCTCAAAAATGGCTTCTGCTCGAGGAGCCTTTTACTGTGGAGAATGAG
ATGCTGACCCCCAAAATGAGTATCAAGCGCCACGCGGTCATCAAAGCATA
CGGCTCTGCTTTAAATGCCATCTATGACCAGGCGAACGTAGCCTCGTATC
CCAAGAGCCGTGCGAAAGAAACTCCAGACACACAACAGCCTTATGAAGAT
GCTCTAGCAGCTTGATATCCATATAAAAGCTTAATAGAAGTGCTATTCGG
CCTTGAAATACAAGAGTTATGAAAGAAAATGTGAGGTGTACGCTCATGAA
ACACTGATGCAAGTCGAAATTGCCTGGCCGACACCAAAAGATTGCCCCAA
GACAAAAAGAAGTCACTTCTGCTGTAACCACAGGGATTTATAGCACAAAA
AAAAATCGTGATACACGCTGAAGGCAATCAATGATGGCGTCTGTCAACCG
TTTTACGTGGTAGCACACAGTCGGAATAGTTGGCATGCGGAAATGGAACG
CGCGAGCAAAGCGCAAAGACAACTACTTCAAAGACAAGCAACTTTCAGTA
CATGGAGACATTCATGGTATATTTGAGCCGTGTAAGCAAACATCGAATTA
TTGAAACAAGAGGAGGCGATCTACTGAACGAGGAGAAAGAATAAGCTGTA
CGTATTTAAATCATTCAGT

protein sequence of rna9116

>rna9116-protein ID=rna9116-protein|Name=rna9116|organism=Nannochloropsis gaditana|type=polypeptide|length=486bp
MEGRAHLRRGLKYGTRGLSQKGIGDPPSGFASRSARRPCPRQPPRKRSSP
IHTTTLNSEAYQSSNPYRAIRGKAAFGNTIDVHTHLYLPGYMDLLRRRAE
VPRIIPAPPGSASDAPERLLILPGEDADESTSSGRPIGREYWSVEKKLSF
MDVHGIQTSVLSPANPWLDFLPPLDALRVAQDLNDELHAICSSSYPAPPS
FPSSAPVPRFLCFGFLPLHPLFQSSQLLPAIVRELERLATPPLSSTMRGV
ILPAQHLDHPLMDGVYEACQRLGLVLFIHPHYGVGKGSEVNGDYGHVLPL
ALGFPFETSVAAARLLLSGYLDRYPDLRVLLAHSGGTLPFLAGRLDCCVA
HDPAFVWGRGGRKGGKLKHSPSLYLRRNFFFDNVVYHQAGCQCLRALLGE
AGKDRVMWGSDHPFFPPVDAAEGEGSRQRPWPSAMKNYEILWGEGTSTDE
VKEGAKEEKWREGVLWRNASKLLCIPTATGEREGRE

mRNA from alignment at KK037251.1:371156..373742+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9116 ID=rna9116|Name=rna9116|organism=Nannochloropsis gaditana|type=mRNA|length=2587bp|location=Sequence derived from alignment at KK037251.1:371156..373742+ (Nannochloropsis gaditana)
GGCAAAAACCCGCGAGGctgtccccgcccctttGCCAAgcgccttttctc
ccccaTACAATTGTACAGTggcatggaaggaagggcgcatCTACGCAGAG
GTTTAAAATATGGAACCCGTGGATTATCACAGAAAGGCATCGGGGATCCA
CCTTCTGGTTTTGCGTCGAGATCAGCCcgtcgtccttgccctcgccAACC
TCCTCGAAAAAGGTCTTCACCAATTCATACCACCACCCTCAACTCGGAGG
CGTACCAATCTTCAAATCCGTACCGGGCTATAAGGGGCAAGGCTGCATTC
GGAAATACCATCGATGTCCATACCCATTTGTACCTGCCTGGATACATGGA
TTTGCTGAGACGCCGGGCAGAGGTTCCGCGGATCATTCCCGCCCCGCCAG
GGAGCGCATCGGACGCGCCCGAGCGCCTTCTGATATTGCCAGGAGAGGAT
GCCGACGAAAGTACATCATCTGGTCGTCCAATTGGTAGAGAGTACTGGAG
TGTCGAGAAGAAGCTGTCTTTCATGGATGTACACGGTAGGTCATGCGGCA
AACTTTGAGTTTTTTTAAAATAGATGTGTCCGACGTAACTTCTTAAGAGG
TATGCGCAAAATCCTATATTGCGCAAAATCCTATATTGTTTTTGCCTAAA
TTCTGTAAGAGACGTACTTCTCGCTTGTATTCGGTGGTGTACTCGAGGGA
TGTCGAGCGTCTACTGTTTTGAGCCAAATCGTACCTTCCTCTATGTACCA
CTACATAACCTAAGTGGCGTTTCTCAGCATCACTGCGACATACGTGCTCC
ATGAAAGTTGGATGATATTGATGATATTTTACCTTCTTCTAAGGCATACA
AACTAgtgtcctctcccccgccaaTCCCTGGCTGGacttcctgcccccct
tgGACGCCCTCCGAGTCGCCCAAGACCTCAATGACGAGCTTCACGCAatc
tgctcctcctcctacccggcccccccgtccttcccttcttcagCCCCTgt
tccccgcttcctctgcttcggattcctccccctgcatcCTCTATTTCAGT
CCTCCCAATTACTTCCCGCCATCGTCCGGGAACTCGAGCGGCTtgccacc
ccccccctttcctccaccatgcGTGGCGTGATACTGCCCGCGCAGCACTT
GGACCACCCGCTCATGGATGGCGTGTACGAGGCCTGTCAGCGGCTAGGGC
TGGTGCTTTTTATTCACCCGCACTACGGCGTCGGGAAAGGGTCAGAGGTG
AACGGGGACTACgggcacgtcctccccctcgccctgggCTTCCCCTTCGA
GACCTCCGTGGCGGCCGCGCGTCTCCTGCTCTCGGGGTACCTGGACCGAT
ATCCTGACCTACGAGTCCTTCTGGCGCACTCGGGAGGTACTTTGCCTTTC
CTTGCTGGACGCTTGGACTGTTGCGTGGCCCATGACCCGGCATTTGtgtg
gggaagggggggaagaaagggtggaaAATTAAAGCACTCGCCCTCGCTGT
ATCTGCGGCGTAATTTCTTCTTCGACAACGTAGTATATCATCAGGCGGGC
TGTCAGTGCCTAAGAGCGCTCCTGGGCGAGGCTGGGAAAGACAGGGTCAT
GTGGGGCTCTGACCATCCGTTCTTCCCCCCGGTGGACGCggctgaggggg
aaggaagccgtcagaggccctggccttccGCAATGAAAAATTATGAAATT
TTATGGGGAGAGGGGACGTCCACTGACGAAGTAAAAGAaggagcaaagga
ggagaaatggcGGGAAGGGGTGCTATGGAGAAATGCGAGCAAGCTGCTGT
GTATTCCCACTGCTaccggagagagggagggaagggagtaggagagggca
aagggatggaggcccCATGCGGAGCTAAGAGGCGGATGCCGTGAGCAAGT
CGAAGCCAAGATGATGAGAGGGCTGGAATGACAGTGGGAGTGTGACGGCG
CGAACGAGTCAAAGCGAATCCAGACTGTGTGGCTGTCGGCAATTCAAAGA
AAGAGCACGCAAATGGAGATTTCGGAAATGAAGGGACCGAATCGCAAAAT
CAGCGAATGCAATTACTGCAACGTACGTATTTATATCCAGCACTGTGCCC
TTTACCGGGATACATTCGAGACTTTCATGCTCTACTCCCTATCACACGCA
TGCTTTTCGTTCGCCTTACCGACCGCTCTTGCCCTCCATCATTAGCCCCG
GCGAGGCCGAACGGCCACTGAACTGTACAATGCACCAGAAAAAATGTTCC
AGCATAAGCGATAAATCTTATTGAAAAAACGCAGCACTCAAGCCTGTGTT
GCCGTCCTCCTATGCCTCTCCTATTACCCCATAACTATGCAGGCTCACCA
CGACTTACCCGCGCAAGAACGCCGCCGCCTCTTTCACAGCCTCTATACTC
GCCAGCACGCTTCCGTGTGCGCCCACTGGTGCCTCGAGCTCAACAAATAG
CAGATCCATGGCTGcatcgtctccctctccgccccccccggtccccgACA
GCTCCTGCTGTCCTCTTTCTATCCTGAACAACGAGATTCGTACACCCTCT
GTCAGCTGGCACCTGATCCCGCGCTTCAAAAGTTCCC

Coding sequence (CDS) from alignment at KK037251.1:371156..373742+

>rna9116 ID=rna9116|Name=rna9116|organism=Nannochloropsis gaditana|type=CDS|length=2922bp|location=Sequence derived from alignment at KK037251.1:371156..373742+ (Nannochloropsis gaditana)
atggaaggaagggcgcatCTACGCAGAGGTTTAAAATATGGAACCCGTGG
ATTATCACAGAAAGGCATCGGGGATCCACCTTCTGGTTTTGCGTCGAGAT
CAGCCcgtcgtccttgccctcgccAACCTCCTCGAAAAAGGTCTTCACCA
ATTCATACCACCACCCTCAACTCGGAGGCGTACCAATCTTCAAATCCGTA
CCGGGCTATAAGGGGCAAGGCTGCATTCGGAAATACCATCGATGTCCATA
CCCATTTGTACCTGCCTGGATACATGGATTTGCTGAGACGCCGGGCAGAG
GTTCCGCGGATCATTCCCGCCCCGCCAGGGAGCGCATCGGACGCGCCCGA
GCGCCTTCTGATATTGCCAGGAGAGGATGCCGACGAAAGTACATCATCTG
GTCGTCCAATTGGTAGAGAGTACTGGAGTGTCGAGAAGAAGCTGTCTTTC
ATGGATGTACACGGCATACAAACTAgtgtcctctcccccgccaaTCCCTG
GCTGGacttcctgccccccttgGACGCCCTCCGAGTCGCCCAAGACCTCA
ATGACGAGCTTCACGCAatctgctcctcctcctacccggcccccccgtcc
ttcccttcttcagCCCCTgttccccgcttcctctgcttcggattcctccc
cctgcatcCTCTATTTCAGTCCTCCCAATTACTTCCCGCCATCGTCCGGG
AACTCGAGCGGCTtgccaccccccccctttcctccaccatgcGTGGCGTG
ATACTGCCCGCGCAGCACTTGGACCACCCGCTCATGGATGGCGTGTACGA
GGCCTGTCAGCGGCTAGGGCTGGTGCTTTTTATTCACCCGCACTACGGCG
TCGGGAAAGGGTCAGAGGTGAACGGGGACTACgggcacgtcctccccctc
gccctgggCTTCCCCTTCGAGACCTCCGTGGCGGCCGCGCGTCTCCTGCT
CTCGGGGTACCTGGACCGATATCCTGACCTACGAGTCCTTCTGGCGCACT
CGGGAGGTACTTTGCCTTTCCTTGCTGGACGCTTGGACTGTTGCGTGGCC
CATGACCCGGCATTTGtgtggggaagggggggaagaaagggtggaaAATT
AAAGCACTCGCCCTCGCTGTATCTGCGGCGTAATTTCTTCTTCGACAACG
TAGTATATCATCAGGCGGGCTGTCAGTGCCTAAGAGCGCTCCTGGGCGAG
GCTGGGAAAGACAGGGTCATGTGGGGCTCTGACCATCCGTTCTTCCCCCC
GGTGGACGCggctgagggggaaggaagccgtcagaggccctggccttccG
CAATGAAAAATTATGAAATTTTATGGGGAGAGGGGACGTCCACTGACGAA
GTAAAAGAaggagcaaaggaggagaaatggcGGGAAGGGGTGCTATGGAG
AAATGCGAGCAAGCTGCTGTGTATTCCCACTGCTaccggagagagggagg
gaagggagtagatggaaggaagggcgcatCTACGCAGAGGTTTAAAATAT
GGAACCCGTGGATTATCACAGAAAGGCATCGGGGATCCACCTTCTGGTTT
TGCGTCGAGATCAGCCcgtcgtccttgccctcgccAACCTCCTCGAAAAA
GGTCTTCACCAATTCATACCACCACCCTCAACTCGGAGGCGTACCAATCT
TCAAATCCGTACCGGGCTATAAGGGGCAAGGCTGCATTCGGAAATACCAT
CGATGTCCATACCCATTTGTACCTGCCTGGATACATGGATTTGCTGAGAC
GCCGGGCAGAGGTTCCGCGGATCATTCCCGCCCCGCCAGGGAGCGCATCG
GACGCGCCCGAGCGCCTTCTGATATTGCCAGGAGAGGATGCCGACGAAAG
TACATCATCTGGTCGTCCAATTGGTAGAGAGTACTGGAGTGTCGAGAAGA
AGCTGTCTTTCATGGATGTACACGGCATACAAACTAgtgtcctctccccc
gccaaTCCCTGGCTGGacttcctgccccccttgGACGCCCTCCGAGTCGC
CCAAGACCTCAATGACGAGCTTCACGCAatctgctcctcctcctacccgg
cccccccgtccttcccttcttcagCCCCTgttccccgcttcctctgcttc
ggattcctccccctgcatcCTCTATTTCAGTCCTCCCAATTACTTCCCGC
CATCGTCCGGGAACTCGAGCGGCTtgccaccccccccctttcctccacca
tgcGTGGCGTGATACTGCCCGCGCAGCACTTGGACCACCCGCTCATGGAT
GGCGTGTACGAGGCCTGTCAGCGGCTAGGGCTGGTGCTTTTTATTCACCC
GCACTACGGCGTCGGGAAAGGGTCAGAGGTGAACGGGGACTACgggcacg
tcctccccctcgccctgggCTTCCCCTTCGAGACCTCCGTGGCGGCCGCG
CGTCTCCTGCTCTCGGGGTACCTGGACCGATATCCTGACCTACGAGTCCT
TCTGGCGCACTCGGGAGGTACTTTGCCTTTCCTTGCTGGACGCTTGGACT
GTTGCGTGGCCCATGACCCGGCATTTGtgtggggaagggggggaagaaag
ggtggaaAATTAAAGCACTCGCCCTCGCTGTATCTGCGGCGTAATTTCTT
CTTCGACAACGTAGTATATCATCAGGCGGGCTGTCAGTGCCTAAGAGCGC
TCCTGGGCGAGGCTGGGAAAGACAGGGTCATGTGGGGCTCTGACCATCCG
TTCTTCCCCCCGGTGGACGCggctgagggggaaggaagccgtcagaggcc
ctggccttccGCAATGAAAAATTATGAAATTTTATGGGGAGAGGGGACGT
CCACTGACGAAGTAAAAGAaggagcaaaggaggagaaatggcGGGAAGGG
GTGCTATGGAGAAATGCGAGCAAGCTGCTGTGTATTCCCACTGCTaccgg
agagagggagggaagggagtag

Synonyms

Publications