rna9111, rna9111 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9111
Unique Name	rna9111
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2887
Alignment location	KK037251.1:358654..360123 -

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans isomerase d
Orig transcript id	gnl\|cribi\|Naga_100012g61.1941.mrna
Orig protein id	gnl\|cribi\|Naga_100012g61.1941
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:358654..360123 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g61	gene8834	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21609.1	cds9081	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9111	rna9111-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:358654..360123-
coding sequence from alignment at KK037251.1:358654..360123-

mRNA sequence

>rna9111 ID=rna9111|Name=rna9111|organism=Nannochloropsis gaditana|type=mRNA|length=2887bp
GCAGCACTAAGGGCTTGCAAGATACCACCCCTTCCGGGGTGTCTTACAAA
GCATACCACGCGGCGCCCCGAACATTTTTACTATTGTGGGATCGAGAAGG
ATCCCTGCATGTGCACATTTTTTCCTCGGCCGTTTTGACTGTCTAGATGT
GATGAATTGGCCCCCCACGCCGTTCATCCAGCACCATGAGGTTTACCAAA
TTGTAGGTCCTCTTGGCATGGACATAGAAACATACTGAGACGGGCTCCGT
GGGGCTCCGTCTACATGAAACCAAGCATAAGGAATTCGGGCATCAGCAAA
TGGCGCCTCTAGTCTTCTTGGTCGGAGTATACTTCTTCCATATGGTAACA
AGCCTCACCATACTTGTAGCCCACAGACCCACATCTCCTTCTTTTTTTGC
AAATGATAAAGGCTGAATTCTCCAATTCGATGGGGAAGAAGAGAGCCCCG
TCCGTGCAAAGCGGCTCACCATCTTCTGTTTCAAGGGCAATCCGTCGTAA
TGATGGCGGCGACGCTCGGGCTACTCGAAGGGACACGGCGGAGCGGCAAC
GCAAGCTGCCCCTCGCACCATCCACTAAACCGATAAGCAATGGACGGCAA
CATCAGCTGCGAGGAAAGAAAAAGGGGAAGGAAACTGAGCTGGAAAGCGA
GAGTGAGGTTGAGGAGAGCGAAGCGGAGGACGAGGACGCCGAGGAAGTTG
GTGAAGAGGATGAAGCATTGGAGGGGTCGGGCTCCGATGAAGAGGAACTT
CATGCGAAAGATCTGGGCTTCACCGACGACAACCAGTCATGGCTCAAAAT
GAAGAAGAGCAATACGAATGGCTTGTTATCTTCGGAGGATGAAGTGGAAG
AAGAAGAGGAAGAAGACGAGGATGACGAGGAGGAGGAGGAGGGGGAAGGG
GATGAGGCCGACGATTTTATGTCAGGCGAGAGTGAAGAGAGTGGAGAGGA
GGTTGCAGACGAGGAAGAGGATTTTGAGGTTGGACACGAGGGAGATCAAG
ATGAGGAGGATGAGGCAGGCGACGAGGGAGGAGAAGGGGGGCCTTGGCCT
GTCGCGGGCCTCGCCTCCGGGCTGAAGGAGCGGATCGAGGAGGTGGTTCA
CATTCTCTCCGACTTCCGCGCGCGCCGGAAGGCAGGAGTCGCGCGGGCGG
AGTACGTGAGGCAGCTGGGGCGTGACCTGTCGGAGCACCACGGATACCTG
CCCGAGCTGACGGGAATGTTCCTGACCATGTTGGGGCCCGCGGAGTGCGT
GGAGTTTATGGCCGCGAACGACCGACCCAGGCCCCTGGTCGTCCGCGCCA
ACACCCTCAAGACGCGGCGCAAGGACCTGGCGCAGGCCCTGCTCAAGCGG
GGGGTGAGTCTGGAGCCCCTGGCGGGCGGCTGGTCCAAGGTGGCGCTGAA
GATCATCGACTCCCAGGTCCCCGTGGGAGCGACCCCGGAGTACCTGGCAG
GGCACTACATTTTGCAGAGCGCCTCCTCCATGACGCCCGTGATGGCTTTG
GCGCCCCAGCCCCACGAGAGGGTGCTGGACCTCTCGGCGGCGCCGGGGGG
CAAGGCGAGTTACTGCGCGCAGCTGATGAAGAACACGGGGCTGCTGGTGG
CGAACGACCTTAAGTCCGAGCGCCAGAAGGCCACTATCGCCAACCTGCAC
CGGCTGGGTGTCCGGAACGCGGTGGTTTGCAGCTACGACGGCCGGCGGCT
GCCCTCAGTCATGAAGGGCTTCGACCGCGCCCTGCTGGATGCCCCGTGCT
CGGGCCTGGGGATCGTGGCCCGAGACCAGTCTGTGAAGGTCCAGCGGACC
CTGGCCGACGTCCGGAAGATGTCGCACCTACAGAGGGAGCTGCTGCGGGC
GGCGGTAGACTGCGTGGACGCGGGGAGCAAGACCGGGGGCGTGCTGGTGT
ACTCGACCTGCTCGGTGGCGGTGGAGGAGAACGAGCTCGTGGTGGACTAC
ATCCTCCGGGCCCGGCCTAACGTCCGCGTGGTGCCCACGGGCCTCGGGGA
CTTTGGGCGGCCGGGCTTCACGCGGGTCGCAGAGCACCGATTCCACCCGT
CCTTGGCCCTGACCAGGCGCTTCTATCCCCATGTCCACAACATGGATGGC
TTCTTCGTCTGCAAGCTGCAAAAGCTGACGAACGCGCTGCCCGGAAAGAA
CGAGGAGGAAGAGAGGGCAGAGGCGAAGGGGAAAAAGAGGAAACAGATGC
GCGATGGCGAAAATGTGGAAAGTAGAGGGAATGAGACAAGAAAAGGTGTG
CAAAAAGTTGAGAAGGGAGAGGAGGAAGCCCCTTTCCGTATTAAAAAGAA
GAAGAAGGGGAGTCAGCCCCAAGGGCCGGTCAGAGAGATCCCGCAGAGCA
CCGCAGAGACGACGGTTGCAGAATCGAGGGTATCTGGCCAGGCGACGATG
TCAAGTGGAACAAACTCTGAGAGAGACGGGCCGTTGGTGGAGAAGGATAA
GCACACGAGAAAGACGGAATCAAAAACGCCAAAAGCGTCAGGGGAGGACG
TTGTCAAGGAAGGGAAGAAGAAAAGTGGGCAGAGCAAGCAAGAAGGGGGC
CGGCATGAGGTCGGCGGAGGGCGAAAAGTTAGTAACGGAGAGCGGCAGAA
GTCTGAGCAGAAGTCAGGCCGGCCAAAGGAGTCGCAAGGAAAACCTGTCG
GAAGAAAAGGGAAAAAGGCGAAAGGGGTCATGTCCTCTTAGAAAGGGGCC
ATGTCGTGTCGATTCTGTGAGATCAAAGTAAGAAAATGAAAAAACGTAGC
CTCTCATGGATCGTCAAGGACGAGGACCGCGCAGGCAGTAGAAAGGAACG
AGGCAGAAATGAAAGAGGAAGTCATTTCGAGACGGTGGAACAAACGACGT
AAAATAGTCGAAATAGTGGATGGTATCCATGACTTCC

protein sequence of rna9111

>rna9111-protein ID=rna9111-protein|Name=rna9111|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MVAVAEKENTKPENVSTPLVALSSYSVNKGSDEVVEDLTLRPSKEDRLAL
CEALYKCTGSFKRIVSPLLPYPLVINRLHRDFVEAQEMSGGSAKEALMTF
AMKMEEPGTKAFLSDAQAQIRAEPKVYAQNMVDDEWISDFQSQVDYVPGL
SKGKRLLDSEDAKQFATFADEMKSAGNKCFASQDYEMALTRYTQGVELLQ
QVECKDEQPQRHLLELYTALLTNQAIAGLKTSAWRTSLTACTACLSINPR
NLKARARRAEAYTCLGDMEAAALDLEVILRLQATELLEDHDQDTAQELLA
AAQKDARKLSQRIERMKREESATAKRMMAGADFTADRHKEKPPAPDIPQP
PSILSSSTSRSRATDPLSAARPVSRLSAKPGSEKLIDEVVALEIQQSLMY
IYSQPVVQGELIMLRKAADYESGRFVQRLRPYLAKLLAEPILDRYSFGKG
EEGYRRMERALGQHVTSSADVCENAKSLLAVLMGDLLEE

mRNA from alignment at KK037251.1:358654..360123-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9111 ID=rna9111|Name=rna9111|organism=Nannochloropsis gaditana|type=mRNA|length=1470bp|location=Sequence derived from alignment at KK037251.1:358654..360123- (Nannochloropsis gaditana)
ATGGTAGCTGTAGCAGAGAAGGAAAATACAAAACCCGAAAATGTGTCCAC
TCCCCTTGTAGCTCTCTCCTCGTATTCTGTCAACAAGGGAAGTGATGAAG
TAGTGGAGGACCTCACCTTACGGCCTAGCAAAGAGGACCGCTTAGCCCTG
TGCGAGGCCCTCTATAAATGCACGGGTTCGTTCAAGCGCATAGTCTCCCC
TTTACTCCCTTATCCGCTTGTCATCAATCGCCTACATCGGGACTTTGTTG
AAGCGCAGGAGATGAGCGGAGGCTCGGCGAAGGAGGCCTTGATGACTTTT
GCCATGAAGATGGAGGAACCCGGCACCAAAGCTTTTTTAAGTGACGCCCA
GGCTCAGATTCGAGCGGAGCCAAAGGTGTACGCTCAGAACATGGTGGATG
ACGAATGGATTAGTGACTTCCAATCTCAAGTGGATTACGTACCGGGCCTG
AGCAAGGGGAAGCGTCTGCTCGACTCCGAAGACGCCAAGCAGTTTGCCAC
TTTTGCCGATGAGATGAAAAGCGCCGGAAATAAATGTTTTGCATCGCAAG
ATTATGAAATGGCATTGACGCGGTACACGCAAGGGGTTGAGCTTTTGCAG
CAAGTCGAGTGCAAAGACGAGCAGCCTCAGCGACACTTGCTTGAGCTCTA
CACCGCGCTCTTGACCAATCAAGCGATCGCAGGCTTGAAAACAAGCGCTT
GGCGCACGTCGCTTACCGCGTGCACTGCTTGCTTGTCAATCAATCCTCGG
AACCTGAAAGCACGCGCACGGCGGGCGGAGGCTTACACTTGCCTGGGCGA
CATGGAGGCCGCCGCCCTCGACTTGGAAGTGATCCTGCGGTTGCAAGCCA
CAGAGTTGCTGGAAGACCACGATCAAGACACGGCACAAGAGCTCTTAGCG
GCCGCACAGAAGGATGCCAGAAAGCTCTCGCAGAGGATCGAGAGGATGAA
GAGGGAGGAAAGCGCGACCGCCAAGCGCATGATGGCCGGGGCGGACTTTA
CTGCGGATCGACACAAGGAGAAGCCCCCCGCCCCGGACATCCCGCAGCCT
CCTTCCATACTCTCGAGCTCGACATCCCGCTCTCGCGCCACGGATCCTCT
GAGTGCTGCACGGCCGGTCTCAAGACTCTCCGCCAAGCCAGGCTCAGAGA
AGCTCATCGACGAGGTGGTCGCCCTGGAGATCCAGCAAAGCCTCATGTAC
ATATACTCCCAGCCCGTCGTGCAGGGCGAGCTGATCATGCTCCGTAAGGC
GGCGGACTACGAATCAGGGCGATTCGTGCAGCGATTGCGGCCTTACCTGG
CGAAGCTGTTGGCGGAGCCCATCTTGGACAGGTACAGTTTCGGGAAGGGG
GAGGAGGGATACCGGAGGATGGAGCGAGCCCTCGGCCAGCACGTGACATC
TAGCGCGGACGTCTGTGAGAACGCAAAAAGCCTCCTGGCGGTCTTGATGG
GGGACCTGCTCGAGGAGTGA

Coding sequence (CDS) from alignment at KK037251.1:358654..360123-

>rna9111 ID=rna9111|Name=rna9111|organism=Nannochloropsis gaditana|type=CDS|length=1470bp|location=Sequence derived from alignment at KK037251.1:358654..360123- (Nannochloropsis gaditana)
ATGGTAGCTGTAGCAGAGAAGGAAAATACAAAACCCGAAAATGTGTCCAC
TCCCCTTGTAGCTCTCTCCTCGTATTCTGTCAACAAGGGAAGTGATGAAG
TAGTGGAGGACCTCACCTTACGGCCTAGCAAAGAGGACCGCTTAGCCCTG
TGCGAGGCCCTCTATAAATGCACGGGTTCGTTCAAGCGCATAGTCTCCCC
TTTACTCCCTTATCCGCTTGTCATCAATCGCCTACATCGGGACTTTGTTG
AAGCGCAGGAGATGAGCGGAGGCTCGGCGAAGGAGGCCTTGATGACTTTT
GCCATGAAGATGGAGGAACCCGGCACCAAAGCTTTTTTAAGTGACGCCCA
GGCTCAGATTCGAGCGGAGCCAAAGGTGTACGCTCAGAACATGGTGGATG
ACGAATGGATTAGTGACTTCCAATCTCAAGTGGATTACGTACCGGGCCTG
AGCAAGGGGAAGCGTCTGCTCGACTCCGAAGACGCCAAGCAGTTTGCCAC
TTTTGCCGATGAGATGAAAAGCGCCGGAAATAAATGTTTTGCATCGCAAG
ATTATGAAATGGCATTGACGCGGTACACGCAAGGGGTTGAGCTTTTGCAG
CAAGTCGAGTGCAAAGACGAGCAGCCTCAGCGACACTTGCTTGAGCTCTA
CACCGCGCTCTTGACCAATCAAGCGATCGCAGGCTTGAAAACAAGCGCTT
GGCGCACGTCGCTTACCGCGTGCACTGCTTGCTTGTCAATCAATCCTCGG
AACCTGAAAGCACGCGCACGGCGGGCGGAGGCTTACACTTGCCTGGGCGA
CATGGAGGCCGCCGCCCTCGACTTGGAAGTGATCCTGCGGTTGCAAGCCA
CAGAGTTGCTGGAAGACCACGATCAAGACACGGCACAAGAGCTCTTAGCG
GCCGCACAGAAGGATGCCAGAAAGCTCTCGCAGAGGATCGAGAGGATGAA
GAGGGAGGAAAGCGCGACCGCCAAGCGCATGATGGCCGGGGCGGACTTTA
CTGCGGATCGACACAAGGAGAAGCCCCCCGCCCCGGACATCCCGCAGCCT
CCTTCCATACTCTCGAGCTCGACATCCCGCTCTCGCGCCACGGATCCTCT
GAGTGCTGCACGGCCGGTCTCAAGACTCTCCGCCAAGCCAGGCTCAGAGA
AGCTCATCGACGAGGTGGTCGCCCTGGAGATCCAGCAAAGCCTCATGTAC
ATATACTCCCAGCCCGTCGTGCAGGGCGAGCTGATCATGCTCCGTAAGGC
GGCGGACTACGAATCAGGGCGATTCGTGCAGCGATTGCGGCCTTACCTGG
CGAAGCTGTTGGCGGAGCCCATCTTGGACAGGTACAGTTTCGGGAAGGGG
GAGGAGGGATACCGGAGGATGGAGCGAGCCCTCGGCCAGCACGTGACATC
TAGCGCGGACGTCTGTGAGAACGCAAAAAGCCTCCTGGCGGTCTTGATGG
GGGACCTGCTCGAGGAGTGA

Synonyms

Publications