rna9107, rna9107 (mRNA) Nannochloropsis gaditana

Overview
Namerna9107
Unique Namerna9107
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length848
Alignment locationKK037251.1:350206..351219 -

Link to JBrowse

Properties
Property NameValue
Producthistone h2b
Orig transcript idgnl|cribi|Naga_100012g57.1983.mrna
Orig protein idgnl|cribi|Naga_100012g57.1983
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:350206..351219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g57gene8830Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21651.1cds9077Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9107rna9107-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9107 ID=rna9107|Name=rna9107|organism=Nannochloropsis gaditana|type=mRNA|length=848bp
TAACACCCTTCATTTAAATCATGGCAAATTTGGCTACGCTAAAGATGGGG
AACATGTGGGCCAAAAAGCCTTTGAAGGAAATTATGCGCGAGAATAAACG
CATGATTAACCGCGCCATCCGGGAGCTGGACCGGGAGCGCAACAACTTGG
AAAAGAACGAGAAGAAGCTCATAATGGATATAAAGAAATATGCCAAGGAG
AACCAGATGGGGGCGGTCAAGACCATGGCAAAGGACTTAGTTCGTACACG
AAATTATCAGACCAAGTTCATTGAAATGCGCTCGCATTTGCAGGGGGCTG
CCCTGAAGCTGGAAACCGTGCGGTCCCACGAGGCCATGGCCAGTGCCATG
CGCAGCGTTACATCGGCCATGGTAAGCATGAACAAACAGGTCAATGTCCC
GGCGCTCACGAAGATCATGACGGACTTCGCCCGCGAGAACGAGAAGTCGG
AGCTGACGGGGGAGATGCTGGGTGACGCCATGGACGACGCGATGACGGAG
GAAGGGGACGAGGAGGAGCAGGAGCGGATCGTGGGCGCCGTGCTCACGGA
GCTGGGTTTGGACATGACGGACGCCGTGCCCGAGGCCCCAGGGGCGGTGC
CCAATACGGCCACTGCCACGGCCGCGGCCACCAGCAGTGGGGGACAGAGA
GAGCCACAGGCGTTGGGGGCAGACCCGACCATGACGGATCTGGAGGCACG
TTTGAACAATTTGAGAAGGGAGTGAGTCGGGAGTTGAAGTCGAGGACGCA
GGGGGGAGGGGCGGGGCTCACAGAGAGTTACTGTGGGTGATTTATAATGT
GAAAGAAAGCAATCGAGAAAACCAAGAAGTATCCACCTTATAGGGCGT
back to top

protein sequence of rna9107

>rna9107-protein ID=rna9107-protein|Name=rna9107|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MAKTPSKKSAKAPKKAGKGTKKKTRVESYGSYIYKVLKQVHPDTGISKRG
VSILNSFIGDIFDRLATEAGKLARYTKKSTLSSREIQTAVRLTLPGELAK
HAVSEGTKAVTKYTSSS
back to top

mRNA from alignment at KK037251.1:350206..351219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9107 ID=rna9107|Name=rna9107|organism=Nannochloropsis gaditana|type=mRNA|length=1014bp|location=Sequence derived from alignment at KK037251.1:350206..351219- (Nannochloropsis gaditana)
CCCAGCAACAAATTTGTAGTGCGGCTCTTAGTTTCTCCCGTGATCTGCTT
GTCATGTTGTTTGTAGAGTCGCATACAGTATCACTGTGCATCCTTATCGC
TAAGAACCACTTCGCACCATACGTCCTTGAGCCTTTCCAATGTTACCTCT
GATTCAGTCGCACGGTGCCACCCTGAGTCCGTAGCCGTCTCAAGCATTTG
CTCTTCATAGCAGTTGCCCCCAGGCTTCACACACAATACGCCTGGTCGGC
ATCACAATTTGCCATTTAGGCTTGAGTCTCAATGCAATCTGGTTGGAGAC
CTAGGAGCGCATGTATCACCGTGGTGCAGTGCTCTTGCCTACTTTTGACA
CTCCTTCCTCACATCTGTCCCCTTTTTCCCGCCCATTTTACCAGACCTTT
TCAAACCTTACCATCCTAACACAATGGCCAAGACCCCCTCTAAGAAGTCC
GCCAAGGCCCCTAAGAAGGCAGGCAAGGGCACCAAGAAGAAGACCCGCGT
GGAGAGCTATGGCTCCTACATCTACAAGGTGCTCAAGCAGGTGCATCCCG
ACACTGGTATCTCCAAGCGTGGTGTTTCCATCCTGAACTCCTTCATCGGT
GACATTTTCGACCGCCTCGCCACGGAGGCTGGCAAGCTGGCTCGTTACAC
CAAGAAGTCCACCCTCTCCTCCCGCGAGATCCAGACGGCTGTCCGCCTGA
CGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCT
GTCACCAAGTACACGAGCTCCTCCTAAGAGACTTGTGCTCTAATTCCTAC
CGCAGCTCACGCGACTCGTGGTAAAAAAAAATTCGAAAAAAACAATTCCA
ACTGGGTTCCTTTAGAACCCCTCAACAAACTCAACAAGCGCCTTATTTGC
TACTCGGACACGGGTCGATATCCTTTTCTTCCTTCACTGAAAATTGTTGT
GCACTTTTAATCACAGTCTTCTACTCATACGAGAAAAGAATAGTTTTCGA
TCATTGATATCAGG
back to top

Coding sequence (CDS) from alignment at KK037251.1:350206..351219-

>rna9107 ID=rna9107|Name=rna9107|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at KK037251.1:350206..351219- (Nannochloropsis gaditana)
ATGGCCAAGACCCCCTCTAAGAAGTCCGCCAAGGCCCCTAAGAAGGCAGG
CAAGGGCACCAAGAAGAAGACCCGCGTGGAGAGCTATGGCTCCTACATCT
ACAAGGTGCTCAAGCAGGTGCATCCCGACACTGGTATCTCCAAGCGTGGT
GTTTCCATCCTGAACTCCTTCATCGGTGACATTTTCGACCGCCTCGCCAC
GGAGGCTGGCAAGCTGGCTCGTTACACCAAGAAGTCCACCCTCTCCTCCC
GCGAGATCCAGACGGCTGTCCGCCTGACGCTGCCCGGTGAGCTGGCCAAG
CACGCCGTGTCCGAGGGCACCAAGGCTGTCACCAAGTACACGAGCTCCTC
CTAA
back to top
Synonyms
Publications