rna9102, rna9102 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9102
Unique Name	rna9102
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2768
Alignment location	KK037251.1:336624..338421 +

Link to JBrowse

Properties


Property Name	Value
Product	hydrolase-like protein
Orig transcript id	gnl\|cribi\|Naga_100012g53.1900.mrna
Orig protein id	gnl\|cribi\|Naga_100012g53.1900
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:336624..338421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g53	gene8826	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9102	rna9102-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21568.1	cds9072	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:336624..338421+
coding sequence from alignment at KK037251.1:336624..338421+

mRNA sequence

>rna9102 ID=rna9102|Name=rna9102|organism=Nannochloropsis gaditana|type=mRNA|length=2768bp
GAAGACTACTCAATGTGTATGTATGATGATTTTATCATAAATTATGCGGG
TTGGTGGGGTGCGAATCCTGCTGCTTTGCACGGTCCCAAGACTTCATGAA
TAGGGCGTGGGGCGCGGGCTGCGTCATCCCGTCCATGATTCCGTGCCCGG
CCGCGCTTGGAGGCTATAGATGGATGGACGTTGTTCTTATTGCCTTTGCC
AGCTTCGGAATGAACCACGAGGCTTCATGTCCATGGCAGCTTTAAGATGA
GGTCGGATGGCGTAGAACAAAAGGATGCGTCGCCTCCAGACAGGGACGAA
GAAGATTAAGATCGAGGCCCGGTAGACCTGGCCTCAGTTTCAAGCTCATT
TGAGAGACTGCAGGAGATACGGCGAAAACTCACATCTCAGTCTCACACAT
AAAAGAGGTTGAGAAATACTGCCGTCCTGGACTTCGTATTCGTCGCTTTG
TGTGACAAGACTGCGCCAGAGAGCGGGATCAGAGCGACCCCTCAACGAAC
GACCGGGCGGAAAGCCTCCTTGACGTGCAGCCCACTCCGTGGCCATCGAG
CTCAAAATATGCCACAGCAATCGAAGTTGGTGTCGCGTGGGCAGGCGTCC
GCACGGGAGGAAAATTGGTTCGAGTACATGATCACGCACCATCGATGGGT
CTTCTGCATTTTCCTGCTAATGCCCCTCTCTCTCATGTTTGACATAGCTT
TGTACATTCGAAACGGTTTACAATTCTACATGAGGAACTGGGCGCCAAAG
CACCACGACGCAAAGGTGGAGGACATTAAAAAACAGATCCGCGAGTGGGC
CCTCCACGACGGCAAGAACAAGCTATGCACGGCCCGGCCGGGCTGGCAGA
CCATGTCCCTCCGCGTCGGCAAATATAAGAAGACTTTCAGAAAGATCAAG
CTCGACCTCCACGACATCCTCTCCATCAACACCAGTGGCCCCGCACCCTC
GGTTCGCGTGGAGCCCTTGGTCACCATGGGCCAGCTCACCGCCGCCCTCC
TGTCCTTGGGCTGGACGGTCCCCGTGCTGCCCGAGCTCGACGACCTGACG
GTGGGCGGCCTGATCGCGGGCGTCGGCGTCGAGTCTTCCTCTCACATCTA
CGGACTCTTCCAGCACATCTGCATGCAGTTTGAAGTGGCCTTGGCCGATG
GCTCGGTTGTCTTCTGCTCTCCCGAGAAAAACCCGGAGCTTTTCTACAAC
ATTCCCTGGTCTCACGGCACCCTCGGCTTTTTGCTATCGGCGGAGATCCG
GATCATTCCCGCAAAACCTTACGTGAAATTGCAATACTATGCCTTTACGA
ACGGAAAAGAGGCGCTAACAATGTTCGAGCGGGAAAGTCGGAAAGGTGTG
AGGAGGCCTGCGCTGGCAGGTACGCAAGTTGCCTTATCGGAATTCGCGGA
GGGAAGGGCGGTAGAGCCGAGGGGAGGGAAGGAGGTGAATGGGGGGACGG
GCGGACCGACGGGAAAAGGAGAGGGAGATGTGCCATCGCCGTCCTCCACG
TCGGGAGGGCGGGTGGGGAGAAGGGAGGACGCAGGGGGCGAGGACGCCGC
CGACTTTGTGGAAGCGCTGGCCTTCAGCAAAGAGCATGTGGTGGTGATGG
TGGGTACCATGGTAGACAAGCCGACGGGGAGACGGGAGGCCGGAAAGGTG
AATGCGATCGGGAAGTTTTGGAAGCCTTGGTTCTTCAAGCACGTCGAGAG
CTTCCTGGCCAAGGGATCGTCCGAAATGAAGGGCAAGGACGTAGAGGCAG
TGGGGGAGGAATACATTCCCCTCCGCCATTACTACCACCGGCATTCCAAG
AGCCTCTTCTGGGAGATTCAGGACATCATCCCTTTTGGGAACCACCCTCT
CTTCCGGTACCTGTTCGGATGGATGATGCCACCGCGCATTTCTCTCCTGA
AGCTGACGCAAACGGAAGCCTTGCGGAAGCTTTACGAGGAGCACCACGTG
GTGCAGGACATGTTGGTCCCCGTCAAAGACCTCGGGGAGAGCTTGGACTG
CTTCGAGGAGGTTTTCAGCGTGTACCCGCTCTGGCTGTGCCCGATGCGGA
TCCCGAAAAATCCCGACTTTAGGAAGCACGGAGGCTTTATCCGGCCGCTG
GAGGACGGGGACGAGATGTTCGTGGACGTCGGGGCCTACGGGAACCCGAG
CATGGAGGGTTTCAACGCCCGCGAGGCCTGCCGGAAAGCGGAGGACTTTG
TGCGTGCGAAAAAGGGGTACCAGATGATGTACGCGGACTCCTTCATGAGC
CGCGAGGAGTTCCGTGAGATGTTCGACCATGGAAAGTACGATGAGCTACG
GCGGAAGATGGACCGGTGTCTGCAGGCGTTTCCGGAGGTCTACGACAAGG
TCAGCAAGGCAGCGAGGGTCTAGTCCTTGCCCTGATGTTCTTTTACGAGC
CCTTTTCACCCTAGGCTTAGTTGCTGCTCCCTCCCTGAGAGCGATACTTC
CCTCGTGGTCGAAGGAAGGACGATGGCCGACGGTAGACTAGCGACAGTTG
ACATCGAGGAGATAGATGAGACTAAGGCAGAGGACGAAGAGCTATGATTT
TGGGGTACGCGTTATGTTGTTCAGTGCGTCGAAGTGCCTGTGTATGATTT
CGGTTGTAGAAGTTGCGTATTTTAGGCGCGAAAGTAAAGCGATGTGCCTC
GTTGAGGGGGCGGGGTAGGACGAGGTAAGAGATGACTTCAAGAAAAGAGA
CGGAGCATCACGCAAGGCCGCCGGCAGACAGGAAGAAGAAGCACTGGCAC
GTTCTGTACGCCTCGCCC

protein sequence of rna9102

>rna9102-protein ID=rna9102-protein|Name=rna9102|organism=Nannochloropsis gaditana|type=polypeptide|length=405bp
MIYRQSASCRLPRRLALVFFSCCLAMPSAESFAAPASHASSTSIPVNSVP
EPTHLAVVVHGLHGRPADLTYLGNAIGSRGQGRILPHLAHCNLHKTMDGV
VKGGERLAAEIKEVVAAHPSLRAISFIGNSLGGVYSRYALSLLWEPRTRT
VLGLKPITFMSIATPHLGVRRFTVVPLPDLVHVATPLFIGQTGNDLILRS
RGEGETPLLLEMAQSTKFLEPLAAFRHRCAYGNVKEDLLVPIGTALFHPG
PESMEGTGHILKETVVLPDGAREDVRMEVFAMPPAPWEDGLKEVEGSVQG
ASPVMKERADGRGRLASVPAVAGGAVPDDSNRDWMEPRMAAQLNALGWEK
VAVAFRTPFFSAHNMICALSRDPLTTFLFRKGQGVMDHAAARIARGAAEE
DDGYA

mRNA from alignment at KK037251.1:336624..338421+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9102 ID=rna9102|Name=rna9102|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp|location=Sequence derived from alignment at KK037251.1:336624..338421+ (Nannochloropsis gaditana)
ACGCCATCCGACCTCATCTTAAAGCTGCCATGGACATGAAGCCTCGTGGT
TCATTCCGAAGCTGGCAAAGGCAATAAGAACAACGTCCATCCATCTATAG
CCTCCAAGCGCGGCCGGGCACGGAATCATGGACGGGATGACGCAGCCCGC
GCCCCACGCCCTATTCATGAAGTCTTGGGACCGTGCAAAGCAGCAGGATT
CGCACCCCACCAACCCGCATAATTTATGATAAAATCATCATACATACACA
TTGAGTAGTCTTCGTTCAGATCCAAGAGGCGCCTAGAAATTCCGTGTTCA
CAGAGTTTCTGATATCGGTAGCACACGAAGCTTCGGTCTCCGCCAAAAAC
GTGATGTGACACTTTCGTGTCGCTCGAGACGTCGCACGTATTGAACGTCA
AAACCACTCAACCCCGTTCGGACACCGGCGAACACAGGCATTTGTTCAAA
TTGGATGATATACAGGCAGTCGGCATCCTGCCGCCTTCCACGACGGCTCG
CTTTGGTCTTTTTTTCGTGTTGCCTTGCAATGCCGTCAGCGGAGAGTTTT
GCCGCCCCAGCCTCACATGCCTCGAGCACAAGCATACCGGTCAACTCTGT
CCCCGAGCCCACGCATTTAGCGGTAGTTGTTCATGGACTTCACGGCCGGC
CCGCTGATCTCACATATTTGGGGAACGCGATTGGCTCAAggggccaaggc
cgcatCCTTCCGCATCTAGCCCACTGCAACCTGCACAAGACCATGGACGG
TGTCGtcaaaggaggagaacgccTGGCGGCCGAAATTAAAGAGGTCGTCG
CTGCCCATCCCTCGTTGCGTGCCATCAGCTTTATCGGCAACTCGCTCGGT
GGAGTGTACTCTCGCTACGCTCTTTCTTTGCTGTGGGAGCCCCGAACACG
CACGGTCCTTGGCCTGAAGCCGATTACCTTCATGTCCATCGCCACGCCTC
ATCTGGGAGTACGCCGCTTCACGGTTGTACCCTTGCCGGACCTTGTGCAT
GTCGCAACTCCCTTGTTTATCGGGCAAACGGGGAACGATTTGATTTTACG
GagcagaggggaaggcgagacGCCGTTGTTGCTGGAGATGGCCCAGAGCA
CGAAGTTCCTTGAGCCCTTGGCTGCCTTTCGACATCGATGCGCCTACGGC
AACGTGAAAGAAGACCTGCTGGTGCCGATAGGGACGGCCTTGTTCCACCC
CGGGCCGGAGAGCATGGAGGGCACTGGACACATCCTCAAGGAGACGGTGG
TCCTCCCGGACGGGGCGAGAGAAGACGTCCGAATGGAGGTCTTCGCGATG
CCTCCCGCGCCgtgggaggacggcttgaaggaggtggaggggtcCGTGCA
GGGTGCGAGCCCGGTTATGAAAGAGAGGGccgatggaagggggaggctgg
cttCAGTGCCCGCGGTGGCCGGAGGGGCAGTGCCGGACGACTCAAACCGG
GATTGGATGGAGCCCCGCATGGCCGCACAACTGAATGCCTTGGGATGGGA
GAAAGTGGCGGTTGCATTTCGAACACCCTTTTTCTCTGCGCACAACATGA
TCTGTGCCCTCTCCCGCGACCCGctcaccaccttcctcttcaggaagggc
cagggcgtGATGGACCACGCCGCCGCTAGGATCGCCCGGGGGGccgcaga
ggaggacgacggatACGCGTAGACGCGGAAGGCGCCCTCAGGAGGAGAGC
CATCGGAGTGATGACTGTCTGGATTGTAAAGAACTTTGTGGATACATGTG
TTGTGCTCGAAAATGACGAAACAAATCGCGGTGGACTGAGAGCCGAGA

Coding sequence (CDS) from alignment at KK037251.1:336624..338421+

>rna9102 ID=rna9102|Name=rna9102|organism=Nannochloropsis gaditana|type=CDS|length=1218bp|location=Sequence derived from alignment at KK037251.1:336624..338421+ (Nannochloropsis gaditana)
ATGATATACAGGCAGTCGGCATCCTGCCGCCTTCCACGACGGCTCGCTTT
GGTCTTTTTTTCGTGTTGCCTTGCAATGCCGTCAGCGGAGAGTTTTGCCG
CCCCAGCCTCACATGCCTCGAGCACAAGCATACCGGTCAACTCTGTCCCC
GAGCCCACGCATTTAGCGGTAGTTGTTCATGGACTTCACGGCCGGCCCGC
TGATCTCACATATTTGGGGAACGCGATTGGCTCAAggggccaaggccgca
tCCTTCCGCATCTAGCCCACTGCAACCTGCACAAGACCATGGACGGTGTC
GtcaaaggaggagaacgccTGGCGGCCGAAATTAAAGAGGTCGTCGCTGC
CCATCCCTCGTTGCGTGCCATCAGCTTTATCGGCAACTCGCTCGGTGGAG
TGTACTCTCGCTACGCTCTTTCTTTGCTGTGGGAGCCCCGAACACGCACG
GTCCTTGGCCTGAAGCCGATTACCTTCATGTCCATCGCCACGCCTCATCT
GGGAGTACGCCGCTTCACGGTTGTACCCTTGCCGGACCTTGTGCATGTCG
CAACTCCCTTGTTTATCGGGCAAACGGGGAACGATTTGATTTTACGGagc
agaggggaaggcgagacGCCGTTGTTGCTGGAGATGGCCCAGAGCACGAA
GTTCCTTGAGCCCTTGGCTGCCTTTCGACATCGATGCGCCTACGGCAACG
TGAAAGAAGACCTGCTGGTGCCGATAGGGACGGCCTTGTTCCACCCCGGG
CCGGAGAGCATGGAGGGCACTGGACACATCCTCAAGGAGACGGTGGTCCT
CCCGGACGGGGCGAGAGAAGACGTCCGAATGGAGGTCTTCGCGATGCCTC
CCGCGCCgtgggaggacggcttgaaggaggtggaggggtcCGTGCAGGGT
GCGAGCCCGGTTATGAAAGAGAGGGccgatggaagggggaggctggcttC
AGTGCCCGCGGTGGCCGGAGGGGCAGTGCCGGACGACTCAAACCGGGATT
GGATGGAGCCCCGCATGGCCGCACAACTGAATGCCTTGGGATGGGAGAAA
GTGGCGGTTGCATTTCGAACACCCTTTTTCTCTGCGCACAACATGATCTG
TGCCCTCTCCCGCGACCCGctcaccaccttcctcttcaggaagggccagg
gcgtGATGGACCACGCCGCCGCTAGGATCGCCCGGGGGGccgcagaggag
gacgacggatACGCGTAG

Synonyms

Publications