rna9092, rna9092 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9092
Unique Name	rna9092
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2118
Alignment location	KK037251.1:314568..316754 -

Link to JBrowse

Properties


Property Name	Value
Product	ceramide synthase 2
Orig transcript id	gnl\|cribi\|Naga_100012g44.1931.mrna
Orig protein id	gnl\|cribi\|Naga_100012g44.1931
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:314568..316754 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g44	gene8817	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21599.1	cds9062	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9092	rna9092-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:314568..316754-
coding sequence from alignment at KK037251.1:314568..316754-

mRNA sequence

>rna9092 ID=rna9092|Name=rna9092|organism=Nannochloropsis gaditana|type=mRNA|length=2118bp
GGCAAGATCGGGCGAGGGATCTGCGCATGAGTCGAGTTGGGCAAATGTAC
CGGAGTGATTCTGGGTAGGAGAAAGTCAACAGTAACCACTTTCACGTATA
AATTGATCTGGATAGGGAGGCAGGGAACCCCTACGCAGGAGACAGGCATT
CGGACTCGCGGCCCGTGCAAGCGTCACTCTCCCTGTTCCTCGCTGGGTCT
GGCATGGTCCTTGAGATGACATGCACAGGACAATCGCGCTTCAAGCAGAG
AAAGTGGATGAAAACAACGACGCGTGCATGCTGCGCAGTTCTGTTGGCGT
GCCACTTGCGCCTGCGTTTCTTTCTCTTATGTACTGCATGGACAAGCACA
TCTAGTCAATTACCTCCTCCCTCCCCTTGCCTAGATCAAAGCCCTAAGCC
ATTGTCGCTATAATGCTTGTTAGTAGTGACGGAAATAAATGACAAGCAAC
ACGGTGGGTTCGAAGAAAAACGCGGCGCTGGCATCTGCATCAGGCGCAAC
GTGGATAGAGGACGAAAAATCCTGGAGCGACTACCAAGGTTTGTCGGTGC
TAAAGCGGATGGATATGATCAAAAGTGTGCTGAAGGAGGGCATAAGTCAA
AGCCGAGACGAGGCAACTGCAGGTGACTACGTGATGGGGAATACCATGAA
ATATCTGCAAGAGGTATTGCCTGCAGACCTGCGCACGTCATTGCCTTGGA
GCGCCCTGGTCAATTTGATCAACACGGGCTTGGCAAAAGTGGGATGGTCA
ATAACGGGGGCACATGAGAGCGAGGCGCCAGAGAGAGGGAAGACGGGAAA
GGATTGTGAAGCGGCTCTGACAGAGGCTTTGCAGGGTGTGACACACTGGT
TGCCAGACGCGGCACTGAATCACACCGCAACGCCCACCACGACCCAAACC
GTCCACGGACCCGTCAAGAGCTGGCAAGACTACCGAGCCATGTGGCCCGT
TCACTATCCCGACGAAGATATCCTGCGCGTTCTCTCCCCCACCTTCCCCC
GCCGGCCCTACCGGTCCCGCCAAGATGAAGAAGGAGGGGAGGAGGGGAAA
GAGGGAGGGCGGGAGGGCGAGGCTTCGCCGCCGTCGATGACCCGCGACCC
CCACTGGGGCCAGCGCAAGCTCTTCCTGAACGAGTTAGAGCTGCTGACCA
GGTATGCAGAGGAGGGGGACCTGGTGCTGTACGCGGGCGCGGCCCCCGGG
TGGCACCTGGAGCTATTGTCGCGGCGCTTTTTCCCAGGCGTGGCCTTCGT
ACTTGTGGACCCGGCGCCCTTCCGCATCGAAGCGAGTGAGAGGGTGAAGC
TGGTGGCGGGCCTGATGACGGATGCGTTGGCGCGAGAGTATGCAGGCCGC
GAGAACCTGATATTCATCAGCGACATTCGGCGGACGTACGCTTCAGAGGA
CCTGATCCTCGAGGACATGCGGGAGCAAGAGCGCTGGCACGAGATGATGG
GGCCCAAGGTCTCGATGATGAAGTTCCGGCTGCCGTGGCGGGCGGGGGAG
ACGGAGTACCTGGACGGGGAGGTGTGGACCCAGCCGTACGCCAAGGCGCG
GTCGACGGAGACCAGGCTGGTGGTGGAGGGCCCGAGGAAGGGAGGGGGGC
AGGAAGGGGAGGAGGGAGGGACGACGAAGGAGGGGGATGGGGGAGGGGGG
GAGGGAAGAAGCGAGGGCGGCGACGTTGGGTGAATCAAGAGTACGAGGAG
CAATGTTACTTCTTCAACACGGTGGTCCGACCGGTCAGACACGTCCATGG
GGTGCGTGGTGCGGCCTTGGGGGAGACGTGGGACTACGCGCGGGAGGTGG
AGATTTGGCGGGAGTATCTACGGCGAGGAGGGGGCCCAGCGGGGAGGGAA
GAGGAGAACGAGAGGATTGCGCGGCTCTCGGTGGTACTGACGGAGCATTT
GGGGGGGGCACAAGGGAGGGAGTGGTTGCGGCGGGTGGAGCCGCGGCTGC
GCGGGGAGGGGGAGGAGGGGAAGGGGCGAGGTCGAGGACAAGGCCCAGAA
GGGTCGGGAGGCCGCAGGCATGGGTATGGCCAGGAACGTCGGCGCAAACG
GTCCCGGGACAGGTGGCAGAGGGGGCCAGGGAGGGAAGGGGGGAGAGAGG
GTCGAGCATCGAAGAACC

protein sequence of rna9092

>rna9092-protein ID=rna9092-protein|Name=rna9092|organism=Nannochloropsis gaditana|type=polypeptide|length=377bp
MPVVMGIWNVFYTQLRAWTYIPLGSYIQFLPRMRNGETAAELEGENFPLV
GDLVDGVLVAACFTILRVLLTRLVFQPAGRGIMKHSYFRMVRDPRLERVL
DRDPLPSAKKIAGMAREVKSTPAAVSAYCRRARNRGREEAALHKFNEVSW
KLLCHVVLTWYGAVAVLARERWWYDVDSCWERYPHMVNSKAAYWYYMLEF
GAFGHEMMAIFWEARRSDFWAMLTHHVATLLLIAGSYTCNFLPIGCLVMI
VHDIADVFLELAKLFNYMSKARPWAKRLTDALFVLFALVFLVTRLLVFPF
RVWWANSMKMPRKYFGYHYTGIGVLNVFCVVLIVLHAYWMFLILRMAVKM
LASGEVSNDTRSDDEEELEASDGEKED

mRNA from alignment at KK037251.1:314568..316754-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9092 ID=rna9092|Name=rna9092|organism=Nannochloropsis gaditana|type=mRNA|length=2187bp|location=Sequence derived from alignment at KK037251.1:314568..316754- (Nannochloropsis gaditana)
GGACGAGGACGATAGGGGACGGACATCCTGCTCCCTCGACCCGCAAGAAC
ACATTTCGCACGGTAGACTGGGCCTTTTGAGCGCGAGTCGTCGTGAAGCT
TTGGTTTCTCGGTTTTGGTTTCTGTGGTATGAGCTACGACACGTTGGCAT
GCAGGGCCTCGGTCGAGGTCCTCCCCTTGGATGTCTCCAAGCATGGCACT
AGCAAGGTCAAGAAGTGTGTGCAACATATTCTTTTGATGAAATGTGATGA
ACAATCTTCAGACTTACACAATTGAAGGGCTGGTCATGCTTTTTGAACGA
TTGAAGGCACCCACACGTATTGCTCCATCGCCGTATGTAATTCACCGCGC
ATAATGCCCCCAAAAACACAGAGCCTGCAGAGTTAGTGTGCGCAGTGCCG
AAAATAGGAAGAACAGCAACTGGTGGGAAATAAAAGAGGGAGAGCGGCGC
GTGGGTGACCCATCCATCGCCCGCTCCCGGCCAAGTCCTCTCGCCTCGCA
CAGCCCTGACGCCGCTGCTCACGCCTCGCTTCTCCTCCCAGCAACCTCTA
TATCATCAGTATGCCAGTCGTCATGGGCATCTGGAATGTATTTTACACCC
AACTTCGTGCCTGGACTTACATACCCCTTGGCAGCTACATCCAGTTCCTG
CCTCGAATGAGGAACGGTGAGACCGCCGCCGAGCTGGAGGGCGAGAACTT
CCCCCTGGTGGGGGACCTCGTGGACGGTGTCCTCGTCGCCGCCTGTTTCA
CGATCTTGCGCGTTCTTCTCACGCGCCTCGTGTTCCAGCCGGCGGGGCGG
GGCATCATGAAGCACTCCTACTTCCGCATGGTCCGAGACCCGCGGCTGGA
GCGTGTCCTGGACCGCGACCCGTTGCCGTCCGCCAAGAAGATCGCGGGGA
TGGCGCGCGAGGTCAAAAGTACGCCAGCGGCGGTCTCAGCCTACTGTCGT
CGCGCGCGGAACCGAGGGCGGGAAGAGGCGGCCCTGCACAAATTTAACGA
GGTCAGCTGGAAGCTCCTCTGCCACGTGGTCCTGACCTGGTACGGCGCCG
TGGCCGTACTCGCGCGGGAACGATGGTGGTACGACGTGGACTCCTGCTGG
GAGCGCTACCCGCACATGGTGAACTCGAAGGCGGCGTATTGGTACTACAT
GCTGGAATTTGGGGCCTTCGGACACGAGATGATGGCGATTTTCTGGGAGG
CACGTCGCTCGGACTTCTGGGCCATGCTCACCCACCACGTAGCCACCCTG
CTCCTGATCGCCGGCTCCTACACCTGCAACTTTTTGCCCATCGGCTGCCT
TGTTATGATCGTCCACGATATCGCCGACGTGTTTTTGGAGCTGGCCAAGC
TCTTCAACTACATGAGCAAAGCCCGGCCATGGGCCAAGCGACTCACGGAC
GCGCTCTTCGTCCTCTTCGCTCTCGTCTTCCTGGTCACGCGCCTCCTCGT
CTTCCCCTTCCGGGTATGGTGGGCCAACTCGATGAAGATGCCCCGCAAGT
ACTTCGGGTACCACTACACGGGCATTGGGGTCCTGAACGTCTTCTGCGTG
GTCCTGATCGTCCTCCACGCCTACTGGATGTTTTTGATCCTGCGGATGGC
CGTGAAGATGCTGGCGAGCGGGGAGGTGTCCAACGATACCCGGAGCGACG
ACGAGGAGGAGCTGGAGGCCTCGGACGGGGAGAAGGAGGACTAGGTAGTA
TCGGTGTGGGGCGGGGTTGGAGGAGGGAAGAGAGTTAGGTGACGAGAGGG
ACGAGCAGGACCCGACGCGCCAAAGCCCAAGGCCCATGAAGGCTTTTATA
TAGGAGGGATGACACATAGTGGGAGGCGGTGGCCGAGGAGGTCGGGGAGG
TAGGGAATGGGGAGGAGGGGGGGGGAGCTGAGGGAGGGGAAGGCAACTCT
TCTGAGTGAGAGCTCAGACTTGTAGAACGTCAGCGAACGCGACAGGCACG
GTAGAGGGGCGCCTAAGCACGATAATCGTTGATGCGTTAGTGTCTTTTGC
AAGCAACCGCAGAAAGGAGGTAGAATGGGACCAAAGTAAACAAGTCAAGG
CACCTAAGAGAGGCCCTCTGGCTCGGACAGGAGGGGACGTTCGCTCTTGT
TAGGCACTATTTGGATCCGATGCCCCACGGTTGCGTGCAGACTGAAGCGC
TCTTGCAGATGTATTTCGCTGCATCCCCTCGCCCTCG

Coding sequence (CDS) from alignment at KK037251.1:314568..316754-

>rna9092 ID=rna9092|Name=rna9092|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at KK037251.1:314568..316754- (Nannochloropsis gaditana)
ATGCCAGTCGTCATGGGCATCTGGAATGTATTTTACACCCAACTTCGTGC
CTGGACTTACATACCCCTTGGCAGCTACATCCAGTTCCTGCCTCGAATGA
GGAACGGTGAGACCGCCGCCGAGCTGGAGGGCGAGAACTTCCCCCTGGTG
GGGGACCTCGTGGACGGTGTCCTCGTCGCCGCCTGTTTCACGATCTTGCG
CGTTCTTCTCACGCGCCTCGTGTTCCAGCCGGCGGGGCGGGGCATCATGA
AGCACTCCTACTTCCGCATGGTCCGAGACCCGCGGCTGGAGCGTGTCCTG
GACCGCGACCCGTTGCCGTCCGCCAAGAAGATCGCGGGGATGGCGCGCGA
GGTCAAAAGTACGCCAGCGGCGGTCTCAGCCTACTGTCGTCGCGCGCGGA
ACCGAGGGCGGGAAGAGGCGGCCCTGCACAAATTTAACGAGGTCAGCTGG
AAGCTCCTCTGCCACGTGGTCCTGACCTGGTACGGCGCCGTGGCCGTACT
CGCGCGGGAACGATGGTGGTACGACGTGGACTCCTGCTGGGAGCGCTACC
CGCACATGGTGAACTCGAAGGCGGCGTATTGGTACTACATGCTGGAATTT
GGGGCCTTCGGACACGAGATGATGGCGATTTTCTGGGAGGCACGTCGCTC
GGACTTCTGGGCCATGCTCACCCACCACGTAGCCACCCTGCTCCTGATCG
CCGGCTCCTACACCTGCAACTTTTTGCCCATCGGCTGCCTTGTTATGATC
GTCCACGATATCGCCGACGTGTTTTTGGAGCTGGCCAAGCTCTTCAACTA
CATGAGCAAAGCCCGGCCATGGGCCAAGCGACTCACGGACGCGCTCTTCG
TCCTCTTCGCTCTCGTCTTCCTGGTCACGCGCCTCCTCGTCTTCCCCTTC
CGGGTATGGTGGGCCAACTCGATGAAGATGCCCCGCAAGTACTTCGGGTA
CCACTACACGGGCATTGGGGTCCTGAACGTCTTCTGCGTGGTCCTGATCG
TCCTCCACGCCTACTGGATGTTTTTGATCCTGCGGATGGCCGTGAAGATG
CTGGCGAGCGGGGAGGTGTCCAACGATACCCGGAGCGACGACGAGGAGGA
GCTGGAGGCCTCGGACGGGGAGAAGGAGGACTAG

Synonyms

Publications