rna9083, rna9083 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9083
Unique Name	rna9083
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1621
Alignment location	KK037251.1:292919..295108 -

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Properties


Property Name	Value
Product	lipase domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100012g35.1945.mrna
Orig protein id	gnl\|cribi\|Naga_100012g35.1945
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:292919..295108 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g35	gene8809	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21613.1	cds9053	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9083	rna9083-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:292919..295108-
coding sequence from alignment at KK037251.1:292919..295108-

mRNA sequence

>rna9083 ID=rna9083|Name=rna9083|organism=Nannochloropsis gaditana|type=mRNA|length=1621bp
TAGACGGCTGGCGACCTCCTTCTGTGTGGTGCTCCACCACCCCTAGCGTG
TAGTAATAGTCCATCGAGTACATCGGCCCCCTGACATTTTTGCTCCTGTC
ATACACAGATCCAATCGTCGCACACATTCTAGAGTGGGCAGTCGGCGTGG
ACAAGCGAAGTATTGCAAGAAACGTGCCCTCTTTCGGACAGCAACCATGA
GGGTCATGGTCATGAAGGGTCACGAGCGGAATATCACCCGTGTGCTCTTC
AATCGCGATGGAGATCTGCTTTTCTCCGCAGCCAGTGACAAAACCCCCAC
GGTCTGGGATACTGAGACTGGGGAACGTTTAGGTACCTACAATGGTCACT
CGGGCTCTATCACAGATATGAGCGTTTCGTGGAACAGCAATCGATTAGTG
ACGGCCTCGGGTGATTGCCAGGTCAAGCTATGGAAGGTGCAGACGGGCGA
GGAGCTGCTCACATACACGCATTCAGGACCCGTCCGAGGTGCTCAATGGG
CCGAGGGCGGGGAGCGTTTTGCCACTGTGTGCGATCCCTTCGTTTCGCAC
AACGCCAAGATACAAGTCTTCTACGCCCCCGAGGACGCGGACCCCGAGAG
CTTGAGCCCGACGCCGGAGGTTTTGATCGAGATCCGGAACCGGGAGGAGA
AGCCGACCAAGGTGTACTGGACACAGTTCAACGAGGATCTGCTGGTGGCG
TACGAGAACGGGTGGGTGCGAAAGTACGATCCCAAGACGGGGGAGGAACG
GACTGGGGAGGGGTCGAGTGCGAAGCTGCATGAGGAGAAGATCAACGCGA
TCACCTGGGACAAGCAAAAGATCTGCTTCATCACCGCCTCCAACGACTAC
CGATCCTGTTTAGTGGACGCCAAGACCTTGAAAGTCCTCCGGGTCTACCA
GACCGACCGCCCTGTCAACGGGGCCGTCATCTCACCGATCAAGGACCACG
TGCTCCTGGGGGGGGGGCAAGAAGCGCAGAGTGTAACGACCACGAGGGGT
CAGGCGGGCAAATTCGAGACGCGCTTTTTTCACTCCATTTACGAGGAAGA
GTTTGGGCGCGTGAAAGGACACTTTGGCCCGATTACGGCCGTGGACATAA
GTCCGGACGGGCTAGCTTTCGTAAGCGGCTCTTTCGACGGCTACGTTCGC
TTGCATTTTTTTGACGACGATTACCTGTTTATGCGAGACGAGGTTCCGGA
AGAGTATTAGGAACGGAAAGTGAAGGGAGGGACTGGCAGAGAGGGGAGTA
ACGAGGTAGAGGGGAAGGAAGGAAGGGAGGAAGGGAGGAAGGGAGGAAGG
GACATGTACAAAAGACGAGCGTTCCTTTGGCGGGGAGGAGAGATGGACGA
GGGGCAGCGGGGCCCTCACTAGTGAGGGCGGTCATAAAGCGAAGAAGGCA
AGGTGAAGGCCACGTCCGTGAGGAATTTTTGGATATCTCTGAGTTTTCGT
TGTTCTATTGAGCAGAGCGTGGTGCCTTTATAAAATCTCACTGTACTGCA
CCCTTGATCACTCAGAGAGTTGTGTGAGATTACGAATGAGCTTATTTCTT
CTTATGCTTATACACGAGAATCGTAAGTCTCTTCACATACTACCAGCCAA
ATCCCTACTTTGCATCCACTC

protein sequence of rna9083

>rna9083-protein ID=rna9083-protein|Name=rna9083|organism=Nannochloropsis gaditana|type=polypeptide|length=617bp
MVNIAKTSVLLLGTFSAVAIASGEPPALLRPQGRLQQEDSTQESHPGIEF
PESLARSNYGDSQPRSAYESVSVGDDGSIRPLYTNANADTHGVQRPTHDD
SASKSLTQEDVSLIFELASGNASIDSNLQGSGIGDKAITATSLVMEHFVA
AFENYRRHLSGISKLFPWAGVIEFLVSVNAVCPIVDFVETIVAVNLPSVR
IQTTQEYPQNPDGTLPRPWKDLKGCDAWFVDEDTIRAEKASYYYVYRMYD
TFYAYATDTAEDKELLDPLAPGWGPQTVHFRNATSVGGQWRESPFSVVTE
KDGHVLVAMRGTMYQDEYRASSIYEFTEPNETVPYFEGKVHSGAFQLFKE
MLPPLLQDIKSRSPNKVTLIGHSVGGVIATMLGAYLGRLDAKEWGVKEEG
AERGKGMEVEVLTVGAYAPGDREFWEKAKGGMNVRNIRYLGEGWIEDGLD
APGKMYTMGDVVAQAPGVPLPTCMHSSSGNETLWGVHKDAGWFDYYMPPC
TVAIYPTSIKNTAAWRDKTNMLDPARMAVVLSHKCPYTCWLTDGMGDPNT
RCYFQEQREVQQQGIRAWIGSLWKKGGKGGKGMALRDGEICRRTEADLYA
DLDLTRDPRIRGSIGQG

mRNA from alignment at KK037251.1:292919..295108-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9083 ID=rna9083|Name=rna9083|organism=Nannochloropsis gaditana|type=mRNA|length=2190bp|location=Sequence derived from alignment at KK037251.1:292919..295108- (Nannochloropsis gaditana)
CATGACATAATGATCGACCTGCTCTATTCAACAGGTAAGCTCTGAGAGGA
CTTCTTCAAAGACGGTATATAAGCACTTTACTAGGGAGTGTTCGAGTCTA
AAATCAACCGAATTCAATCAAGCTCTTAACGTCATGGTCAACATTGCCAA
AACGTCTGTGCTTCTTCTGGGAACATTCAGTGCTGTTGCGATCGCTTCGG
GAGAGCCACCGGCGCTCCTACGACCTCAAGGGCGGCTGCAACAAGAGGAT
TCAACACAAGAATCACATCCAGGTATCGAATTTCCTGAATCCCTTGCAAG
AAGTAATTATGGTGATAGTCAGCCGCGATCTGCCTACGAAAGCGTTTCGG
TTGGGGACGATGGAAGCATAAGACCTCTTTATACAAACGCCAACGCTGAC
ACGCATGGTGTTCAACGACCTACCCATGATGATTCTGCATCCAAGAGCTT
GACACAAGAGGACGTATCTCTTATATTCGAGCTAGCTTCTGGCAACGCTT
CAATAGACAGCAACTTGCAGGGCAGTGGAATAGGAGATAAAGCCATCACA
GCGACTTCCTTGGTCATGGAACATTTCGTCGCCGCCTTTGAAAATTACAG
AAGACATCTGTCAGGCATTAGCAAGCTCTTTCCTTGGGCGGGTGTCATAG
AGTTTCTTGTCAGTGTCAATGCTGTTTGTCCCATCGTTGACTTTGTTGAG
ACTATTGTAGCCGTTAACCTGCCTAGTGTCCGCATTCAAACTACCCAAGA
GTACCCTCAAAACCCTGACGGGACTTTACCTCGCCCTTGGAAGGACTTAA
AGGGATGTGACGCCTGGTTTGTGGATGAGGATACCATCCGCGCAGAAAAG
GCTTCGTATTATTACGTCTACCGCATGTATGATACATTCTACGCCTACGC
GACCGACACAGCGGAAGACAAGGAGCTGCTCGACCCTCTTGCACCCGGGT
GGGGTCCTCAGACGGTGCACTTTCGAAATGCCACCTCCGTCGGCGGTCAA
TGGCGGGAAAGTCCGTTCTCTGTTGTTACAGAAAAAGATGGACATGTGCT
GGTGGCGATGCGGGGCACTATGTATCAAGACGAATATCGCGCAAGCTCGA
TATACGAGTTTACTGAGCCCAACGAGACCGTGCCATACTTTGAGGGGAAG
GTCCATTCAGGGGCTTTTCAACTTTTCAAAGAGATGCTCCCACCTCTACT
GCAGGACATTAAGTCGCGGAGTCCGAACAAAGTGACCCTGATCGGACACA
GCGTTGGTGGTGTCATCGCTACCATGCTGGGCGCGTACCTAGGCCGGCTC
GATGCGAAGGAATGGGGAGTAAAAGAGGAAGGGGCAGAGAGAGGGAAGGG
AATGGAGGTGGAGGTATTAACAGTGGGAGCCTACGCGCCAGGGGACCGGG
AGTTCTGGGAGAAGGCGAAGGGCGGCATGAATGTAAGGAACATTCGATAT
CTAGGAGAGGGATGGATAGAAGATGGGTTGGACGCACCAGGGAAAATGTA
TACGATGGGCGATGTTGTCGCTCAAGCCCCTGGGGTTCCCTTGCCCACGT
GCATGCATTCCTCAAGCGGGAATGAGACGCTGTGGGGCGTGCACAAAGAC
GCAGGCTGGTTCGACTACTACATGCCTCCGTGCACCGTCGCCATTTACCC
AACCTCCATAAAGAATACGGCGGCTTGGCGCGATAAGACCAACATGCTCG
ACCCCGCGAGGATGGCGGTGGTCTTGAGCCACAAGTGCCCTTACACCTGC
TGGCTGACGGACGGCATGGGCGACCCGAATACACGCTGCTACTTTCAGGA
GCAGCGGGAGGTGCAGCAGCAGGGTATCAGAGCCTGGATAGGTTCATTGT
GGAAAAAAGGCGGAAAAGGGGGGAAGGGCATGGCTCTAAGGGATGGGGAA
ATCTGTCGGAGGACGGAGGCTGACCTTTACGCGGACTTGGACTTGACGAG
GGATCCCCGGATAAGAGGAAGCATTGGCCAAGGTTGATAGGGGAGGATCG
AGTGGATGCAAAGTAGGGATTTGGCTGGTAGTATGTGAAGAGACTTACGA
TTCTCGTGTATAAGCATAAGAAGAAATAAGCTCATTCGTAATCTCACACA
ACTCTCTGAGTGATCAAGGGTGCAGTACAGTGAGATTTTATAAAGGCACC
ACGCTCTGCTCAATAGAACAACGAAAACTCAGAGATATCC

Coding sequence (CDS) from alignment at KK037251.1:292919..295108-

>rna9083 ID=rna9083|Name=rna9083|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at KK037251.1:292919..295108- (Nannochloropsis gaditana)
ATGGTCAACATTGCCAAAACGTCTGTGCTTCTTCTGGGAACATTCAGTGC
TGTTGCGATCGCTTCGGGAGAGCCACCGGCGCTCCTACGACCTCAAGGGC
GGCTGCAACAAGAGGATTCAACACAAGAATCACATCCAGGTATCGAATTT
CCTGAATCCCTTGCAAGAAGTAATTATGGTGATAGTCAGCCGCGATCTGC
CTACGAAAGCGTTTCGGTTGGGGACGATGGAAGCATAAGACCTCTTTATA
CAAACGCCAACGCTGACACGCATGGTGTTCAACGACCTACCCATGATGAT
TCTGCATCCAAGAGCTTGACACAAGAGGACGTATCTCTTATATTCGAGCT
AGCTTCTGGCAACGCTTCAATAGACAGCAACTTGCAGGGCAGTGGAATAG
GAGATAAAGCCATCACAGCGACTTCCTTGGTCATGGAACATTTCGTCGCC
GCCTTTGAAAATTACAGAAGACATCTGTCAGGCATTAGCAAGCTCTTTCC
TTGGGCGGGTGTCATAGAGTTTCTTGTCAGTGTCAATGCTGTTTGTCCCA
TCGTTGACTTTGTTGAGACTATTGTAGCCGTTAACCTGCCTAGTGTCCGC
ATTCAAACTACCCAAGAGTACCCTCAAAACCCTGACGGGACTTTACCTCG
CCCTTGGAAGGACTTAAAGGGATGTGACGCCTGGTTTGTGGATGAGGATA
CCATCCGCGCAGAAAAGGCTTCGTATTATTACGTCTACCGCATGTATGAT
ACATTCTACGCCTACGCGACCGACACAGCGGAAGACAAGGAGCTGCTCGA
CCCTCTTGCACCCGGGTGGGGTCCTCAGACGGTGCACTTTCGAAATGCCA
CCTCCGTCGGCGGTCAATGGCGGGAAAGTCCGTTCTCTGTTGTTACAGAA
AAAGATGGACATGTGCTGGTGGCGATGCGGGGCACTATGTATCAAGACGA
ATATCGCGCAAGCTCGATATACGAGTTTACTGAGCCCAACGAGACCGTGC
CATACTTTGAGGGGAAGGTCCATTCAGGGGCTTTTCAACTTTTCAAAGAG
ATGCTCCCACCTCTACTGCAGGACATTAAGTCGCGGAGTCCGAACAAAGT
GACCCTGATCGGACACAGCGTTGGTGGTGTCATCGCTACCATGCTGGGCG
CGTACCTAGGCCGGCTCGATGCGAAGGAATGGGGAGTAAAAGAGGAAGGG
GCAGAGAGAGGGAAGGGAATGGAGGTGGAGGTATTAACAGTGGGAGCCTA
CGCGCCAGGGGACCGGGAGTTCTGGGAGAAGGCGAAGGGCGGCATGAATG
TAAGGAACATTCGATATCTAGGAGAGGGATGGATAGAAGATGGGTTGGAC
GCACCAGGGAAAATGTATACGATGGGCGATGTTGTCGCTCAAGCCCCTGG
GGTTCCCTTGCCCACGTGCATGCATTCCTCAAGCGGGAATGAGACGCTGT
GGGGCGTGCACAAAGACGCAGGCTGGTTCGACTACTACATGCCTCCGTGC
ACCGTCGCCATTTACCCAACCTCCATAAAGAATACGGCGGCTTGGCGCGA
TAAGACCAACATGCTCGACCCCGCGAGGATGGCGGTGGTCTTGAGCCACA
AGTGCCCTTACACCTGCTGGCTGACGGACGGCATGGGCGACCCGAATACA
CGCTGCTACTTTCAGGAGCAGCGGGAGGTGCAGCAGCAGGGTATCAGAGC
CTGGATAGGTTCATTGTGGAAAAAAGGCGGAAAAGGGGGGAAGGGCATGG
CTCTAAGGGATGGGGAAATCTGTCGGAGGACGGAGGCTGACCTTTACGCG
GACTTGGACTTGACGAGGGATCCCCGGATAAGAGGAAGCATTGGCCAAGG
TTGA

Synonyms

Publications