rna9081, rna9081 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9081
Unique Name	rna9081
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1873
Alignment location	KK037251.1:289024..291050 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100012g33.1964.mrna
Orig protein id	gnl\|cribi\|Naga_100012g33.1964
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:289024..291050 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g33	gene8807	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9081	rna9081-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21632.1	cds9051	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:289024..291050-
coding sequence from alignment at KK037251.1:289024..291050-

mRNA sequence

>rna9081 ID=rna9081|Name=rna9081|organism=Nannochloropsis gaditana|type=mRNA|length=1873bp
AGCGCACTCCTTCCGTTGATTTGGGAAGCTCACCTAACCCTCCCACCCCG
CATCGTCCATAAGAGCCCACGGAAGTGAGAGCTTCACTATACACTCAAAT
TGTCATTGTTTTTTCCTACCTTCTGTTCGATGCAACAGTAGGAAATTAGT
ATTCGTAACTCCTATGACATCAATTTTCTTCTGTCCAGCCTAGTTTCTAT
GCCTTATTGGGATTGCCGGTTGGCCCGCTGCCTACTCCTGTGGATAGTCT
TGCTATCTTTGGTGGACAAAAGCTACGGAAGAGACGAGGAGTCCATACGG
GCGCTTGCCTCGACGAGGACTCGTAGGCCGACGCCCGTACGAGCTACGAG
AGCTCCACGCCCTACAAGAGCTCCGCGAACGAAGCCTCCGACATTCAATG
ATCCGCTACCGACCAAGATCCCCACACTCGCTCCTACGCATGCAAAATTG
ACCGCCAGGCCAACCGCATACGTACCGCCCCCCAAACCCGGCGAAGAATC
GGTACCTGGAGAGGTAGAGGCCTTATTGCCTGAAGCTATCAACTCGAAGC
CTTTCATTTACGCTGGAATAGGGGTGGGTCTTTTTCTCATAGTTCTCGCA
AGCGTTTTCTTAGTAGTCCGCTCACTTCGCCGTTCTGCTGCCTCAGCAAT
CCTAAATGCTGGGTCTGGAGGTCCTTCTTCTGGGTTTGGCACTCCCCCTC
CCTATGGAAACAGCTTTTCCTCGCCTGTCCTCACTCCTTCCCTCTATGCG
TGCTCCCCAAGCCCTTATCAAGACCCAAAATCTCACTTTTCCTCCTCCAC
TTTGTCATCGAATGCTGCTTCTCGGGTGGCAGATGCAAGTGCGGGCCTGC
GAGCCTCTAGGCAGGGGCCACAAGCTCCGGAGAACCAACAGCAGCAACCA
AAACAGGCCTCCTCCTCACAGATCCGTCCAGCCCCCTTCACCCGACCGGC
ACCCTCGCCCCCCCCTCCATCCTCCATCAATCAACACGTTTCTTCCCTTC
CTCCTCTCCCTCCCTCTCCGACCCAGCCTCCCGCCAAGCCCAGGCCGGTT
GCTCGTCCCTCTAACTTGCCTCCTCCTCCAATACACTCGCCTCCGCCTGT
CGCCCGCGCTCCCTCTTCTCAACCACCCCCCCATCGTCCTCCAAGGCGTG
GGCATGACCCTCCTCCCGATCGCCGCGGTCGGCAACCGGAGGCGCCACCA
CGTGGCAGAGAATTGGAACAGCGCCAAGCACCCCCTCCACGGGGCCGACG
GGCGTTCGTTGAAGGCGTGCGGATCCGGGAAGGAGAGGGCGACGACGGAG
ACAGTGGATTCTGAAGGGAGCAAGAAGGGCTTCTGGGGAGATATGAGGGA
GAGATGGTGCCAGAGGGGGATGTAGTTACATATGTGAAAAAGGGAAGGTC
GGGCACAGGTGATGGGCAAGGGTTTCCGATAAGGCTGGAGGACAGATGAA
AACTGAGGAGGGAGGACAGGAGGGGGGTGCGAGGGCCCGGTGGTTTGGGA
AAGGGGTCAAGAGGAGTGGGAAACAGGGTGTGTGCATGGATGCTTTGTAA
AGTTGCGCGGTTAAATAGGACGCGGTGTCCAGGTCAAGGGAGGCCGAGCA
AAGCGGGCCGCCCACGAGGTCGAGGGAATTTCTCCTTCCACTTCCATATT
CAATGGGCGCCAGCCCCCTTGAGGTTCTGTTAATGATTCTGTATTTCTTT
CAATCATTAATCCCTTGTGCGATGTCTGTGTACAGGAGCTTCTCCCCCCA
CCTTCTCAAGCCCCTCTTGGTGGACACAGGTGAGAGCGACGTCGAGTCCA
GCATCCTCCCTGCTCGTTTTCTTTGGCGTCTGCACACACATGATTACGGC
AGTCACGCATTTCCTGGCTCAAA

protein sequence of rna9081

>rna9081-protein ID=rna9081-protein|Name=rna9081|organism=Nannochloropsis gaditana|type=polypeptide|length=433bp
MYSTKVSKAESKLRHGMGKALSLLVAIPVPSLTALLKNSIYLLITLLARF
EGFSRKVDIVFGPLLMPGGVEGAVRAPPTACSTSSSCLPRPPCNLLFLLI
LSLFILFFCPSIEARVWARVVHPPKTLQAVPEVHEAGWLRLHSNDLPNVT
PALTPYWENVTIRPILSAIQRSANPWYTIRSLDPGTMGWHRVYRRRQRVP
RRDLNPPPSATPPSTSYVSEEEEFGGPEGGDEGMFEYVDDESLSYLQPVW
EERKRGAVASLGGRRGAEANPSLLIGPFMVLLITSSPFDPFSNHLEARVT
QVAPAFPHVLFLKGEGKDFSGLVAQISVKGLPQVLLFEENLLRGRFRGVK
TVRNLLSFLVLHTGCLPRAVVTGNGEPEDKLMVRLPMVDEPGLGWIYALS
VIWVLGEWILKLAKMGRKERRATNSDEEDEKQE

mRNA from alignment at KK037251.1:289024..291050-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9081 ID=rna9081|Name=rna9081|organism=Nannochloropsis gaditana|type=mRNA|length=2027bp|location=Sequence derived from alignment at KK037251.1:289024..291050- (Nannochloropsis gaditana)
GAGGGAGGAGGGAGTCATCAGCTTTGTTCGATGAAACGGGGCGTGCTTCG
CTCACTACAGGAATATACGTGCTCTTAGTATTATTATGTGGAGGAGTGTG
CATCGGTGATAATGTATTCCACGAAAGTGTCAAAGGCAGAGTCTAAGTTG
CGTCATGGAATGGGGAAGGCTCTATCGCTCCTCGTAGCAATACCGGTGCC
GTCACTGACCGCACTTCTAAAAAACTCGATTTATTTACTCATAACACTGC
TTGCACGTTTTGAAGGCTTTTCTAGGAAAGTAGATATTGTCTTCGGGCCT
CTTTTGATGCCCGGTGGGGTTGAAGGGGCGGTCAGGGCCCCCCCAACGGC
TTGCAGCACTTCCTCATCCTGCCTGCCGCGTCCGCCTTGCAATCTGCTGT
TTCTCCTTATCCTGTCGCTCTTCATCCTCTTCTTTTGTCCTTCCATTGAA
GCCCGTGTCTGGGCTCGCGTTGTGCATCCTCCCAAGACTTTACAAGCTGT
CCCTGAAGTTCATGAGGCCGGTTGGCTGCGTCTCCACAGCAACGACCTTC
CAAATGTCACCCCTGCTCTAACCCCGTACTGGGAAAATGTCACAATTCGT
CCAATTCTGTCCGCAATTCAACGATGTAAGCGGTCCTGGGTGCCCACATG
GGGTTGGGAAGGAGGTGAACTCTAATATTGTTTGCTTTGCTGGATTGCTT
CTCGCGTGTGAGAGTTATGTGTGTGAGAGGGTTGGCTACGTGTGGGTGCG
TCTAGATGGGAGGATGTCTTGGGGGAGGCTTGGGTGAGAAGAGAGGGATG
GAGGGAGAGAGAGAGAGGAAGAGAGAGGAGGGGGGAAGAGAGAATAACGG
AAAAATAAGGAGAGCGAGAGAGAGAAACAGAACGAAAGAGGGAATGGGAG
AAAGAGAAAGAGAGGCAACGAAGCCGCAGAGGCCGGTGGATACACCCTGT
CCGTGGTCCAAATCTCATTTTCCCCTCATAAATTATGCCACACGATGACA
GCGGCCAACCCCTGGTACACCATCCGCAGCCTCGACCCCGGGACTATGGG
GTGGCACCGTGTCTACAGGCGCCGACAGCGCGTCCCCAGGCGCGACCTTA
ACCCCCCCCCCTCCGCGACACCGCCCTCCACGTCGTATGTATCCGAAGAA
GAGGAGTTCGGGGGGCCTGAGGGTGGAGACGAGGGCATGTTCGAGTACGT
GGACGATGAGTCCTTGTCCTACCTGCAGCCAGTGTGGGAGGAGAGGAAGC
GGGGGGCGGTAGCCTCGCTTGGTGGGCGACGGGGCGCAGAGGCAAACCCG
TCTCTCCTTATTGGGCCGTTCATGGTGCTGCTTATCACCTCCTCCCCCTT
CGATCCTTTCTCCAACCATCTAGAAGCCCGCGTCACGCAGGTGGCTCCTG
CTTTTCCTCATGTCCTTTTCCTGAAGGGGGAGGGGAAGGACTTCTCGGGG
CTGGTGGCACAGATAAGCGTGAAAGGGCTTCCTCAAGTGTTGCTTTTTGA
AGAGAACCTTCTTCGAGGCCGTTTTCGAGGCGTGAAGACTGTGCGAAATT
TGCTCTCTTTCCTAGTGCTCCACACGGGGTGCCTTCCGCGGGCTGTCGTG
ACAGGGAACGGTGAACCTGAGGACAAGCTCATGGTAAGGCTTCCAATGGT
TGACGAACCAGGTCTAGGGTGGATTTACGCGCTGAGTGTGATTTGGGTGT
TGGGTGAGTGGATTTTAAAGCTTGCGAAGATGGGCAGAAAGGAGAGGCGG
GCCACTAATAGCGATGAAGAAGATGAGAAGCAGGAGTGACACAAGCAAGC
TGGAAAACAAAATTTGAATGGATGGTGTAGATTTCAAAGTGTATAGAAGG
TCAATTCGGGGCGGTTATATAAAATTGGATAGTGTTCAAAGAAATATTAA
AAAAGATGTGGAAAAGGAAAGGATGTATCGCAGGGAAGCCATAAGTTGTC
CATGGTTCCGGGTCAGGCGGACAAGAAAGCAGGGGTCCTATATACTTTGA
TGGATGAAGGGAGCTATGCAAAGCACA

Coding sequence (CDS) from alignment at KK037251.1:289024..291050-

>rna9081 ID=rna9081|Name=rna9081|organism=Nannochloropsis gaditana|type=CDS|length=2604bp|location=Sequence derived from alignment at KK037251.1:289024..291050- (Nannochloropsis gaditana)
CGGCCAACCCCTGGTACACCATCCGCAGCCTCGACCCCGGGACTATGGGG
TGGCACCGTGTCTACAGGCGCCGACAGCGCGTCCCCAGGCGCGACCTTAA
CCCCCCCCCCTCCGCGACACCGCCCTCCACGTCGTATGTATCCGAAGAAG
AGGAGTTCGGGGGGCCTGAGGGTGGAGACGAGGGCATGTTCGAGTACGTG
GACGATGAGTCCTTGTCCTACCTGCAGCCAGTGTGGGAGGAGAGGAAGCG
GGGGGCGGTAGCCTCGCTTGGTGGGCGACGGGGCGCAGAGGCAAACCCGT
CTCTCCTTATTGGGCCGTTCATGGTGCTGCTTATCACCTCCTCCCCCTTC
GATCCTTTCTCCAACCATCTAGAAGCCCGCGTCACGCAGGTGGCTCCTGC
TTTTCCTCATGTCCTTTTCCTGAAGGGGGAGGGGAAGGACTTCTCGGGGC
TGGTGGCACAGATAAGCGTGAAAGGGCTTCCTCAAGTGTTGCTTTTTGAA
GAGAACCTTCTTCGAGGCCGTTTTCGAGGCGTGAAGACTGTGCGAAATTT
GCTCTCTTTCCTAGTGCTCCACACGGGGTGCCTTCCGCGGGCTGTCGTGA
CAGGGAACGGTGAACCTGAGGACAAGCTCATGGTAAGGCTTCCAATGGTT
GACGAACCAGGTCTAGGGTGGATTTACGCGCTGAGTGTGATTTGGGTGTT
GGGTGAGTGGATTTTAAAGCTTGCGAAGATGGGCAGAAAGGAGAGGCGGG
CCACTAATAGCGATGAAGAAGATGAGAAGCAGGAGTGAATGTATTCCACG
AAAGTGTCAAAGGCAGAGTCTAAGTTGCGTCATGGAATGGGGAAGGCTCT
ATCGCTCCTCGTAGCAATACCGGTGCCGTCACTGACCGCACTTCTAAAAA
ACTCGATTTATTTACTCATAACACTGCTTGCACGTTTTGAAGGCTTTTCT
AGGAAAGTAGATATTGTCTTCGGGCCTCTTTTGATGCCCGGTGGGGTTGA
AGGGGCGGTCAGGGCCCCCCCAACGGCTTGCAGCACTTCCTCATCCTGCC
TGCCGCGTCCGCCTTGCAATCTGCTGTTTCTCCTTATCCTGTCGCTCTTC
ATCCTCTTCTTTTGTCCTTCCATTGAAGCCCGTGTCTGGGCTCGCGTTGT
GCATCCTCCCAAGACTTTACAAGCTGTCCCTGAAGTTCATGAGGCCGGTT
GGCTGCGTCTCCACAGCAACGACCTTCCAAATGTCACCCCTGCTCTAACC
CCGTACTGGGAAAATGTCACAATTCGTCCAATTCTGTCCGCAATTCAACG
ATCGGCCAACCCCTGGTACACCATCCGCAGCCTCGACCCCGGGACTATGG
GGTGGCACCGTGTCTACAGGCGCCGACAGCGCGTCCCCAGGCGCGACCTT
AACCCCCCCCCCTCCGCGACACCGCCCTCCACGTCGTATGTATCCGAAGA
AGAGGAGTTCGGGGGGCCTGAGGGTGGAGACGAGGGCATGTTCGAGTACG
TGGACGATGAGTCCTTGTCCTACCTGCAGCCAGTGTGGGAGGAGAGGAAG
CGGGGGGCGGTAGCCTCGCTTGGTGGGCGACGGGGCGCAGAGGCAAACCC
GTCTCTCCTTATTGGGCCGTTCATGGTGCTGCTTATCACCTCCTCCCCCT
TCGATCCTTTCTCCAACCATCTAGAAGCCCGCGTCACGCAGGTGGCTCCT
GCTTTTCCTCATGTCCTTTTCCTGAAGGGGGAGGGGAAGGACTTCTCGGG
GCTGGTGGCACAGATAAGCGTGAAAGGGCTTCCTCAAGTGTTGCTTTTTG
AAGAGAACCTTCTTCGAGGCCGTTTTCGAGGCGTGAAGACTGTGCGAAAT
TTGCTCTCTTTCCTAGTGCTCCACACGGGGTGCCTTCCGCGGGCTGTCGT
GACAGGGAACGGTGAACCTGAGGACAAGCTCATGGTAAGGCTTCCAATGG
TTGACGAACCAGGTCTAGGGTGGATTTACGCGCTGAGTGTGATTTGGGTG
TTGGGTGAGTGGATTTTAAAGCTTGCGAAGATGGGCAGAAAGGAGAGGCG
GGCCACTAATAGCGATGAAGAAGATGAGAAGCAGGAGTGAATGTATTCCA
CGAAAGTGTCAAAGGCAGAGTCTAAGTTGCGTCATGGAATGGGGAAGGCT
CTATCGCTCCTCGTAGCAATACCGGTGCCGTCACTGACCGCACTTCTAAA
AAACTCGATTTATTTACTCATAACACTGCTTGCACGTTTTGAAGGCTTTT
CTAGGAAAGTAGATATTGTCTTCGGGCCTCTTTTGATGCCCGGTGGGGTT
GAAGGGGCGGTCAGGGCCCCCCCAACGGCTTGCAGCACTTCCTCATCCTG
CCTGCCGCGTCCGCCTTGCAATCTGCTGTTTCTCCTTATCCTGTCGCTCT
TCATCCTCTTCTTTTGTCCTTCCATTGAAGCCCGTGTCTGGGCTCGCGTT
GTGCATCCTCCCAAGACTTTACAAGCTGTCCCTGAAGTTCATGAGGCCGG
TTGGCTGCGTCTCCACAGCAACGACCTTCCAAATGTCACCCCTGCTCTAA
CCCCGTACTGGGAAAATGTCACAATTCGTCCAATTCTGTCCGCAATTCAA
CGAT

Synonyms

Publications