rna908, rna908 (mRNA) Nannochloropsis gaditana

Overview
Namerna908
Unique Namerna908
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length687
Alignment locationCM002456.1:705026..706385 -

Link to JBrowse

Properties
Property NameValue
Productmitochondrial carrier family
Orig transcript idgnl|cribi|Naga_100022g19.848.mrna
Orig protein idgnl|cribi|Naga_100022g19.848
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:705026..706385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g19gene871Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna908rna908-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29749.1cds908Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna908 ID=rna908|Name=rna908|organism=Nannochloropsis gaditana|type=mRNA|length=687bp
ATGTACAAGGGCAACAATGGGGACTCTACTGGGAGCGGTACGATGGTTTA
TCTGAACGTTTATGACTTGCATGCAGCGAATCGATATGCCCATCCGCTCG
GCATGGGCGTGTATCATACAGGCGTGGAGATCGCAGGGAGCGAGTACACT
TATGCGGGTGGCGCTGGAATTTTTGCGATGTACCCAAGGGTGGCACCTGG
AGCTACTTTTCGGGAGTCTATCCCCTTGGGCACTGTGCTTGATGCTCCAA
GAGCGTTACGTCGGGCTCTGGAAGCTCTGCGCTCGGACTTTGGTCCAGAC
GATTACAGCCTTGTGAAATTAAACTGCAATCATTTCTCGGCAGCCCTCGT
GATGGAGCTCTTGGGGAAACCGATACCCGCCTACGTCAACAGACTTGCCT
TCTTCGGCTCATTCTTTTCATGCTTCCTTCCCGTGGAGATGACGAGCCAG
GCACCCGTCTCTCAAGAGGGGAATTCGACAGGGGCCGCCGAACCCTCTGT
CCAGCGTTTTATTGGCACATCCTCAGGCACTCGAACAGCGTTCAGTGGCG
AAGGTGTACGGTCGGGCAGCAAAGCTTCGGGAGTTCCAGCTGACAAAAGC
GAATACGAAAGAAGAGAGCGCATCCGCCAGGCCACAATGACTCGTTTGGC
GGGGGCCACGGAGGCGCAGGGCGCATCATCTGCCTGA
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protein sequence of rna908

>rna908-protein ID=rna908-protein|Name=rna908|organism=Nannochloropsis gaditana|type=polypeptide|length=399bp
MGGAHKTPSAFAEAMGGAIGALWTTLLFYPLDVAKLRLQAEADSEEEGRK
DEEYDVGREKGCTPKVNTDICEDASRLDAPDALTTVQKKGPRTFLGEVLV
VLKQPELWYAGLGLKLQLSVLSTFIYFYVYTALKRVFTRAFKRPVTFLPN
LALASMAGVVNVLLTMPLDTLVTRLQVAPAGRRPSLGEMLRLVWEEDGPD
REPVVKPSGHEAGAYGVGMGGVMPVLRRLARFWHGCLPALLLTSNPAINY
AAYDAMKTLVPLPQGRRHHNVRETFLIGMLSKFLATLITYPLIRAKVIMM
SDTKRAHYLETHFGVNDHSEEDAESIPLGLSPRLLLAQERQGLCSILKQL
IREGGVRELYVGLDGQVLNTALKNATLLNTKDRISRVTSFLLRRFFAYQ
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mRNA from alignment at CM002456.1:705026..706385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna908 ID=rna908|Name=rna908|organism=Nannochloropsis gaditana|type=mRNA|length=1360bp|location=Sequence derived from alignment at CM002456.1:705026..706385- (Nannochloropsis gaditana)
ATGGGAGGCGCGCACAAAACACCCTCGGCATTTGCCGAAGCCATGGGCGG
AGCCATTGGTGCACTGTGGACGACGCTACTTTTTTATCCCCTGGACGTGG
CCAAGTTACGCCTTCAGGCCGAAGCCGATTCTGAGGAGGAGGGGAGAAAG
GATGAGGAATATGATGTGGGTCGCGAGAAGGGATGCACGCCCAAGGTCAA
TACAGACATATGCGAAGACGCGAGCAGATTAGACGCTCCGGATGCGCTCA
CTACTGTTCAGAAGAAAGGGCCCAGGACCTTTCTGGGGGAAGTCTTAGTT
GTGTTGAAGCAACCAGAATTGTGGTACGCTGGATTAGGTGAGTTGGCATG
GTAGTCGCGTACTTCGTCAAACGTTTTTGCCGAATGCCAGATTCATTCTT
ATAATTTCAGTGATCGCCTGACATTACTTCAATCGAACCCCAAGCACAAT
TGTCCAATGCTTTCCTGGTCCTGAACTGACCGCTTCTTCCCTCCCAGGCT
TGAAACTACAACTCTCCGTGCTCTCCACCTTCATCTACTTCTACGTGTAC
ACCGCGCTCAAACGGGTGTTCACGCGCGCATTCAAGCGGCCCGTGACATT
CCTGCCAAACCTAGCGCTCGCGAGCATGGCCGGTGTCGTGAACGTCCTCC
TGACAATGCCCCTGGATACTCTCGTTACTCGTCTTCAGGTCGCACCGGCG
GGTCGGCGTCCCTCCCTTGGGGAGATGCTGCGTCTTGTGTGGGAAGAGGA
TGGTCCAGACCGAGAGCCTGTGGTAAAGCCAAGCGGTCACGAGGCAGGCG
CGTACGGAGTGGGGATGGGCGGCGTCATGCCCGTTCTCAGGCGTCTGGCG
CGATTCTGGCACGGCTGCCTTCCCGCCCTCCTTCTCACCTCCAATCCTGC
AATCAACTACGCAGCCTACGATGCTATGAAGACTCTGGTACCCCTTCCGC
AAGGCCGCAGACATCACAACGTGAGGGAGACCTTTCTGATCGGCATGTTG
TCCAAATTTCTCGCCACGCTCATTACTTATCCGCTCATACGTGCAAAAGT
CATAATGATGAGCGACACGAAACGTGCGCACTACCTTGAAACCCATTTCG
GGGTCAACGATCACAGCGAAGAGGATGCAGAGTCCATCCCTCTGGGTCTG
TCGCCCAGGCTCTTGCTGGCTCAGGAGCGACAGGGCCTCTGTAGCATTCT
AAAGCAACTGATCAGAGAGGGCGGAGTCCGAGAGCTCTATGTCGGATTGG
ACGGACAAGTTTTGAACACAGCCTTGAAAAATGCTACACTGCTCAACACG
AAGGATCGCATCAGCCGTGTGACAAGCTTTCTGCTGCGCCGGTTCTTCGC
ATACCAGTAG
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Coding sequence (CDS) from alignment at CM002456.1:705026..706385-

>rna908 ID=rna908|Name=rna908|organism=Nannochloropsis gaditana|type=CDS|length=2400bp|location=Sequence derived from alignment at CM002456.1:705026..706385- (Nannochloropsis gaditana)
GCTTGAAACTACAACTCTCCGTGCTCTCCACCTTCATCTACTTCTACGTG
TACACCGCGCTCAAACGGGTGTTCACGCGCGCATTCAAGCGGCCCGTGAC
ATTCCTGCCAAACCTAGCGCTCGCGAGCATGGCCGGTGTCGTGAACGTCC
TCCTGACAATGCCCCTGGATACTCTCGTTACTCGTCTTCAGGTCGCACCG
GCGGGTCGGCGTCCCTCCCTTGGGGAGATGCTGCGTCTTGTGTGGGAAGA
GGATGGTCCAGACCGAGAGCCTGTGGTAAAGCCAAGCGGTCACGAGGCAG
GCGCGTACGGAGTGGGGATGGGCGGCGTCATGCCCGTTCTCAGGCGTCTG
GCGCGATTCTGGCACGGCTGCCTTCCCGCCCTCCTTCTCACCTCCAATCC
TGCAATCAACTACGCAGCCTACGATGCTATGAAGACTCTGGTACCCCTTC
CGCAAGGCCGCAGACATCACAACGTGAGGGAGACCTTTCTGATCGGCATG
TTGTCCAAATTTCTCGCCACGCTCATTACTTATCCGCTCATACGTGCAAA
AGTCATAATGATGAGCGACACGAAACGTGCGCACTACCTTGAAACCCATT
TCGGGGTCAACGATCACAGCGAAGAGGATGCAGAGTCCATCCCTCTGGGT
CTGTCGCCCAGGCTCTTGCTGGCTCAGGAGCGACAGGGCCTCTGTAGCAT
TCTAAAGCAACTGATCAGAGAGGGCGGAGTCCGAGAGCTCTATGTCGGAT
TGGACGGACAAGTTTTGAACACAGCCTTGAAAAATGCTACACTGCTCAAC
ACGAAGGATCGCATCAGCCGTGTGACAAGCTTTCTGCTGCGCCGGTTCTT
CGCATACCAGTAGATGGGAGGCGCGCACAAAACACCCTCGGCATTTGCCG
AAGCCATGGGCGGAGCCATTGGTGCACTGTGGACGACGCTACTTTTTTAT
CCCCTGGACGTGGCCAAGTTACGCCTTCAGGCCGAAGCCGATTCTGAGGA
GGAGGGGAGAAAGGATGAGGAATATGATGTGGGTCGCGAGAAGGGATGCA
CGCCCAAGGTCAATACAGACATATGCGAAGACGCGAGCAGATTAGACGCT
CCGGATGCGCTCACTACTGTTCAGAAGAAAGGGCCCAGGACCTTTCTGGG
GGAAGTCTTAGTTGTGTTGAAGCAACCAGAATTGTGGTACGCTGGATTAG
GCTTGAAACTACAACTCTCCGTGCTCTCCACCTTCATCTACTTCTACGTG
TACACCGCGCTCAAACGGGTGTTCACGCGCGCATTCAAGCGGCCCGTGAC
ATTCCTGCCAAACCTAGCGCTCGCGAGCATGGCCGGTGTCGTGAACGTCC
TCCTGACAATGCCCCTGGATACTCTCGTTACTCGTCTTCAGGTCGCACCG
GCGGGTCGGCGTCCCTCCCTTGGGGAGATGCTGCGTCTTGTGTGGGAAGA
GGATGGTCCAGACCGAGAGCCTGTGGTAAAGCCAAGCGGTCACGAGGCAG
GCGCGTACGGAGTGGGGATGGGCGGCGTCATGCCCGTTCTCAGGCGTCTG
GCGCGATTCTGGCACGGCTGCCTTCCCGCCCTCCTTCTCACCTCCAATCC
TGCAATCAACTACGCAGCCTACGATGCTATGAAGACTCTGGTACCCCTTC
CGCAAGGCCGCAGACATCACAACGTGAGGGAGACCTTTCTGATCGGCATG
TTGTCCAAATTTCTCGCCACGCTCATTACTTATCCGCTCATACGTGCAAA
AGTCATAATGATGAGCGACACGAAACGTGCGCACTACCTTGAAACCCATT
TCGGGGTCAACGATCACAGCGAAGAGGATGCAGAGTCCATCCCTCTGGGT
CTGTCGCCCAGGCTCTTGCTGGCTCAGGAGCGACAGGGCCTCTGTAGCAT
TCTAAAGCAACTGATCAGAGAGGGCGGAGTCCGAGAGCTCTATGTCGGAT
TGGACGGACAAGTTTTGAACACAGCCTTGAAAAATGCTACACTGCTCAAC
ACGAAGGATCGCATCAGCCGTGTGACAAGCTTTCTGCTGCGCCGGTTCTT
CGCATACCAGTAGATGGGAGGCGCGCACAAAACACCCTCGGCATTTGCCG
AAGCCATGGGCGGAGCCATTGGTGCACTGTGGACGACGCTACTTTTTTAT
CCCCTGGACGTGGCCAAGTTACGCCTTCAGGCCGAAGCCGATTCTGAGGA
GGAGGGGAGAAAGGATGAGGAATATGATGTGGGTCGCGAGAAGGGATGCA
CGCCCAAGGTCAATACAGACATATGCGAAGACGCGAGCAGATTAGACGCT
CCGGATGCGCTCACTACTGTTCAGAAGAAAGGGCCCAGGACCTTTCTGGG
GGAAGTCTTAGTTGTGTTGAAGCAACCAGAATTGTGGTACGCTGGATTAG
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Synonyms
Publications