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Properties
| Property Name | Value |
|---|
| Product | small nuclear ribonucleoprotein sm d1 |
| Orig transcript id | gnl|cribi|Naga_100012g22.1952.mrna |
| Orig protein id | gnl|cribi|Naga_100012g22.1952 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037251.1 | supercontig | KK037251.1:268588..270047 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna9069 ID=rna9069|Name=rna9069|organism=Nannochloropsis gaditana|type=mRNA|length=2053bp
AATTAAACCTCTGACTGCTCGCCAACTTTGATTCAAGCATGGCTTCCGTC
TGCCACCCATGCTGATGTAACAACCCTACGTACTTACACAGACTCGAACT
CGTCTGTATCAAATCTCCCATTTTGAGTGCCAGTACTTCCATTTGCCCTA
ATTTCTGGCCTCCCCCGCGCAAAGACGCATGGCCTCTGCACCGGCAAGGC
CCTACCATCGCCAATCCCTATGGGCAAACCCCTCCTCGCTACTGCTCTCT
TTGGCATTTGCCGCATTCGCAGTTGCCTTCCATGCTCTTTTCATGACACC
GTGGCTGGAGGCACGAGCCGCTCGGTTGCGTGGAGGCTGGGCTCGGGAGT
CTATGGACGAGGAGTCTTCGATAAGACACGGAGGATGTGATTTTTTGAGG
CTTGACGCGGCTGTTCTCGACACGGACACGTTTGAGCACCTGTACAGGGG
ACAACGCCCGGTAGTACTGTCGTCGTCAACGAGTCTGGCGGCGTTTTGGA
ATCAGCCTCGGTGGCCATTCGTGCAGGAGGAGAAGGAGGTGCAGATGGAG
GCGTGGGGACGAGACCGGCTTCTAAAGCGGCACGGAAAGAACCTGACTGT
GCTGGTAGGGGGTTGGGAGGCTTGGGAGGGGCAGACCAAGGCCGGCATGT
TTGCCTTGGGAAATGGGGTTGGCGGTGTCCGACTGCCTTTACAAGAGTTT
GTGCACAGGTACCTGGACCGCCCGGGTGGCGCGGCCGGTGGAGACGCAGG
CGCCGAGGAGGCCGTGAAGGACTTTGCGCACACCGGCACAGTTTCATGGG
CCTTGGAGGACCTCCCCAGGGACCTGGCAGATGCGGTTTGTACCCCCAAA
TTGTTCGACGCATGGGCCGGGGAGGAAATGACCTGGTCGGGCAGGAAAGG
CCAGGGGGAAGAGGCATCCAGGAACGGAAAAGACAATGGGAAGGAAGAGG
CAGGCCGTGTCCGCATCGCGCTGGGCAAGTCTCGGGGAGGACGGGGTTGG
AGTGTGTCGGAGAGGGAGAGCTGGTCAGGCCTCATGTTCGGAGGCGCCGT
CCTGCACTACCTATACCCCCCGGGGCGTGGCCTCCGGAACCTGACGCTCC
AAGGAAGGGGCCACCCGCTCCTGGGCCCCTTGGAATGGGCGACAGGCACG
TTGGGCGTATTGGAGCACTACGACGGGGTTCGGGGCCCGGGGGGGGGATC
ATGGACCCGCCGCCCTTGCAATGCTGGCAAGGACCAGGGGACCTCGTGTA
CGTGCCGCCGGGCTGGAAGAGCATGCGGGTGCACGTTGGGGACGTGGTCA
TGGTAGAAGGCGAGGGCGTGCGGGGCGGGGGAGTACGGGCGCGGGGCGGG
GAAAAGGAGGATGTGGAGGACAGGATATTCCACTACCATGCAGAGGCCCT
CGCGAGGCATCCCGAGGACGTGGAATCCCTCATAGCGGCCGGGGAGGCGT
ATGCCCGACAAAGCCTTCGGGCGACCACGACCGTGAATCGAGACTCTTTG
TGGCGGGAGTCCTTCATGTGCGTACACACCGCCGTGAACCTCCGTCCCTG
CGACCCGACTACCCATCTCGTCGCCGCCCAGGTCCTGTTGGCCAATCGGA
GCGCCTCCCACGACGAGAACCACAGGCAAGCCAAGGCCATCATCCATAGG
GCCGAAGAGACCTTCTTCACACTCTCTTCTCCTTCCTGCCCCTTTCCCGA
CCTTCCTCGGGAACGTGTCGCGGCCTTGTTGGCCTCGGCTCGACTGCGCT
TCGCGCAATTTTTCTTGTGGATAGGCGATGAAACCGAAGCTAAACGAGCT
GTGGCAGAGGTGTTGGCACTACGGCCGACATATCTCGAAGCGCATCAATT
GCTGGTGCTTGTCCTGAAGAAAAGCGGGAGAGACAGAGAAGCGCGAGAAG
CGATGCACCTTGCCCTTATTGCTTTAGGGCCGCGGGGGCGGGAAAGGAGT
GTAATAGAAGCATTTGAGAGTTTACTCGAACCTCAAAAAGACTGTAGATA
ATAACTTTGTAACAAAATTGAGTAAAGTAATGTATTGAAGCGAGTAAATT
ACC back to topprotein sequence of rna9069 >rna9069-protein ID=rna9069-protein|Name=rna9069|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGK
NPVSYESLSIRGNNIRYYILPDALNLDALLVDDGPKNKLKPGAQAGGRGR
GRGVGGRGGRGRGGPGGRGRGRF back to topmRNA from alignment at KK037251.1:268588..270047+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna9069 ID=rna9069|Name=rna9069|organism=Nannochloropsis gaditana|type=mRNA|length=1460bp|location=Sequence derived from alignment at KK037251.1:268588..270047+ (Nannochloropsis gaditana)
ccgtcgcaTCAGCATGCACCTGCGTGCCTATGCTTCCACGCACAATCCCA
TAAGCCATGAAAATTTGGGATGATGTACCGTCTCGTGCAAAGCATAGTAG
AGTCCAGGCCGATCGCAACTGTTCATCGGCAAGCTGGATATgatcatctc
cctccctacagaCCATCATGCATGTTGTCTTACGTGCCTCTGATTATCTG
GCCAGTCTGCACTATTCTCACCCACACCACCGCATGATTAAACAGATACT
TCCTTCTTTGGGATTACAGCAGCATTGAAAACTTCGGATCAGGACGTTTG
CACGATTGTAAACGCTGACTTTTTGGGTGCGGATAGCGTTGGTGAGtctg
cccgctcctcttGAAGTGAAGCCGCAAAGCGCAACGAGTAAGAATAACTC
ACTTGACTACAGCATAAGCTTACTGCGGCATCCGAGAAGCACCATGAAGC
TAGTCAGGTAAAGTGGCATGCACAATCAAAAGGATAGGAGTACAGGCTCC
CGTCGCCCCAGGTCGGATGGTATCGTACATCTTTCACTTTGTCGTGGATG
TTTCCCTTTTTAGGCGTTTGCACCAACACATTCCCTCTCGTCGTAAACCT
TTGCAGATTTTTGATGAAGCTGAATAATGAGACCGTCACCATTGAATTGA
AGAATGGCACGACCATCCAAGGCACTATTTCTGGTACGTCGTCTGTAAAT
TGCAGGCATTTGGTGCACCATTTGTTTTTCCCCAGTGTTGTTTGCATCCT
TCTCAAAATAGCGCCAATAGAGCCATTGCAAGGTGGTGAATGTTACCAAT
AATCTGATGAGCGTTTATATCCACTATAGGCGTCGACGTGTCGATGAACA
CGTACCTCAAGAACGTGAAGGTTACGCTGAAAGGCAAGAATCCCGTCTCG
TACGAGAGCCTGTCCATCCGTGGCAATAATATTCGCTACTATATTCTGCC
GGATGCCCTTAATTTGGACGCATTGTTGGTGGATGATGGTCCGAAAAATA
AGCTGAAGCCCGGGGCGCAagctggaggacggggtaGGGGGCGCGGAGTt
ggcgggcggggtgggaggggaaggggtggtccAGGCGgtaggggcagggg
cagatTTTAAGTAAATGACGTAATGTAGATTCTCTTCGAAAAATTTGATC
CTGAGGTGGGGTCGGGATGCGCGGGAGGGCTGGACAGCAGAGATGCAGGA
CAGCTCGGGGTAATTGATGTACTTCCCTTATATTTGGGACGGTTACCCAT
TAGTTTCGTGACAGCATGTTTCACAAAAACATGATGTTCGGTTGCGAAAC
GAGTCAGGGGCGATGGGACGTTCCCGCTTTGGCATGTGCGAGATCCGAGC
AACCTTAAAGATCGAAGAACTAAGGAGTGAGTATAAATTGAGCCTTGTCT
GCAATTCATACCATCGGGAGGCTGCTTCGTCTCCGCCACCGCGAGGCTTT
TTTCTAAGCA back to topCoding sequence (CDS) from alignment at KK037251.1:268588..270047+ >rna9069 ID=rna9069|Name=rna9069|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at KK037251.1:268588..270047+ (Nannochloropsis gaditana)
ATGAAGCTAGTCAGATTTTTGATGAAGCTGAATAATGAGACCGTCACCAT
TGAATTGAAGAATGGCACGACCATCCAAGGCACTATTTCTGGCGTCGACG
TGTCGATGAACACGTACCTCAAGAACGTGAAGGTTACGCTGAAAGGCAAG
AATCCCGTCTCGTACGAGAGCCTGTCCATCCGTGGCAATAATATTCGCTA
CTATATTCTGCCGGATGCCCTTAATTTGGACGCATTGTTGGTGGATGATG
GTCCGAAAAATAAGCTGAAGCCCGGGGCGCAagctggaggacggggtaGG
GGGCGCGGAGTtggcgggcggggtgggaggggaaggggtggtccAGGCGg
taggggcaggggcagatTTTAAATGAAGCTAGTCAGATTTTTGATGAAGC
TGAATAATGAGACCGTCACCATTGAATTGAAGAATGGCACGACCATCCAA
GGCACTATTTCTGGCGTCGACGTGTCGATGAACACGTACCTCAAGAACGT
GAAGGTTACGCTGAAAGGCAAGAATCCCGTCTCGTACGAGAGCCTGTCCA
TCCGTGGCAATAATATTCGCTACTATATTCTGCCGGATGCCCTTAATTTG
GACGCATTGTTGGTGGATGATGGTCCGAAAAATAAGCTGAAGCCCGGGGC
GCAagctggaggacggggtaGGGGGCGCGGAGTtggcgggcggggtggga
ggggaaggggtggtccAGGCGgtaggggcaggggcagatTTTAAATGAAG
CTAGTCAGATTTTTGATGAAGCTGAATAATGAGACCGTCACCATTGAATT
GAAGAATGGCACGACCATCCAAGGCACTATTTCTGGCGTCGACGTGTCGA
TGAACACGTACCTCAAGAACGTGAAGGTTACGCTGAAAGGCAAGAATCCC
GTCTCGTACGAGAGCCTGTCCATCCGTGGCAATAATATTCGCTACTATAT
TCTGCCGGATGCCCTTAATTTGGACGCATTGTTGGTGGATGATGGTCCGA
AAAATAAGCTGAAGCCCGGGGCGCAagctggaggacggggtaGGGGGCGC
GGAGTtggcgggcggggtgggaggggaaggggtggtccAGGCGgtagggg
caggggcagatTTTAA back to top
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