rna9065, rna9065 (mRNA) Nannochloropsis gaditana

Overview
Namerna9065
Unique Namerna9065
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length579
Alignment locationKK037251.1:252259..254074 -

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF819
Orig transcript idgnl|cribi|Naga_100012g18.1924.mrna
Orig protein idgnl|cribi|Naga_100012g18.1924
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:252259..254074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g18gene8792Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21592.1cds9035Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9065rna9065-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9065 ID=rna9065|Name=rna9065|organism=Nannochloropsis gaditana|type=mRNA|length=579bp
ATGACAACTCCTGCTGCACAGCATTATGTCTCAGGCTCGGTGGCGATGGG
AACGGATTCTGGAAATGCTGCTCGCACAGACGAGCCGGAGGATGCTGTCG
ATCCTTCTCTGCTCATTGCAACCAAGCTTACACCTGTCAAGCGGCCATTC
CAAACAGAAATGACTATTTCTAAAGATACAGAGAAACGCGCACGCGTGAA
TGCACTGGAAGACGGAGAAGATGTCCCTAGCAACCAATCCACAAATCGAA
TTATCAACAGTGTGGAGCCACTACCCCGGCGCCAATTAATTCTGACTCTT
GATAGGAGCGAGGAACCAAAATATTCGCAAGAGACAAATCAACCCCATGA
TTTCGATTCCCATACAGAAGACCAAGAAGATATGGACGTGTCTCCATCGG
ATCCCGCGACAACTATGCCTCTACATGATCCCGTGCACCCCGATTCTTCT
ATAGATAGGAGAGCAACTTCCCCAACAAGAAGTTGCGAAAATGCCGAGAT
TTGTGAAACCTTGCAGAAATTTTTGTCTCAAACAAGAGAAGATGCTTTGT
GCTCCAGAATGTGGCGCGTCACTATGTGA
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protein sequence of rna9065

>rna9065-protein ID=rna9065-protein|Name=rna9065|organism=Nannochloropsis gaditana|type=polypeptide|length=530bp
MPSFGKSSSFVLPVIKGRRGFKFHARPYISPRATMALVSGSHRITSAIPM
LTSKFQISTPLLTAGISLAVSSLFGMLLESKTKLGRALGASLIAFLSQSL
LSNINLIPMESPIYDACWGKVLPASLSLSVLLAVAAAGTPTSSSRTTQDQ
LISLNNISSIKSAASSSLTSVPQRNQTWAESSLWKVLLANVFGACGAVIG
GLLAFTFASRCQDQFPKPVLAKIVASIATTHIGGSINFFQVARSVGLDRE
GQGLLGAVAGADIFLMALHFAALLGIQRNPTGTAAFINRSDIDQTSWKVS
VAAFTPSSSISSNETRQCREATETRPLALHARNAFPHATLTPAVSDTLLP
AIFALLLALMVGEGGQFVERKLGVPGAAAGAITALSAGVYGLIRRLAPRC
FLRLALPVGAMSSLLFSLFFAAIGAGASLMHLAESGPVIVTLMSVSLLVH
LLTTMLGIHVYNRFVPWPARISVDEAVIASNANVGGPATAAAMAGSMGRA
DLVLSAAATGTAGYAVATFIGVALFKFLAS
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mRNA from alignment at KK037251.1:252259..254074-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9065 ID=rna9065|Name=rna9065|organism=Nannochloropsis gaditana|type=mRNA|length=1816bp|location=Sequence derived from alignment at KK037251.1:252259..254074- (Nannochloropsis gaditana)
ACTCTCCATCTTCGTACATATTATCAAAAACTCAGACAACGGTTTTTCCT
TGAAGTGCTCGTGGTCGGCGATACGTCACACGATACAACGACTCCCACTG
AACCCCACAACTGACGCGAGGCTCTGCCCCAGACAGGAAGGCTGTCAAGT
GGTATGCCTTCGTTCGGTAAGAGCTCTTCTTTCGTGTTGCCTGTAATAAA
GGGACGACGCGGCTTCAAATTCCACGCACGCCCTTACATCTCCCCACGAG
CAACTATGGCGCTGGTCTCGGGTTCTCATCGTATTACCTCCGCTATACCT
ATGTTGACGTCAAAATTTCAAATATCGACACCTTTGCTTACTGCTGGTAT
ATCGCTTGCTGTCTCCTCCTTATTTGGGATGCTTCTGGAGAGCAAAACGA
AACTTGGTCGAGCCTTGGGAGCTTCGCTCATTGCATTCTTATCGCAATCC
CTGTTATCCAACATCAACCTCATTCCGATGGAATCCCCAATTTATGATGC
TTGTTGGGGTAAAGTATTGCCTGCATCGCTCTCTCTTTCTGTCCTTCTTG
CCGTTGCTGCCGCCGGTACTCCCACTTCCTCCTCGCGCACCACTCAAGAT
CAATTAATTTCATTGAACAACATCTCCTCGATTAAGTCCGCCGCTTCTTC
TTCTTTGACTTCAGTACCTCAAAGGAATCAAACGTGGGCTGAATCTTCCC
TTTGGAAAGTTTTGCTGGCAAACGTCTTCGGAGCCTGTGGCGCGGTGATT
GGTGGTCTTCTAGCCTTCACCTTTGCCTCCCGTTGCCAAGACCAGTTTCC
CAAGCCGGTCCTGGCTAAAATCGTCGCCTCAATTGCCACCACCCACATCG
GTGGCTCCATAAACTTTTTCCAAGTAGCCCGTAGCGTGGGTCTTGACCGG
GAGGGGCAAGGCTTGCTAGGTGCAGTGGCTGGGGCAGACATATTCTTGAT
GGCACTGCATTTCGCGGCGCTTTTGGGCATTCAGAGAAACCCGACAGGGA
CAGCAGCGTTTATAAATCGTAGTGATATTGACCAAACATCTTGGAAAGTG
TCAGTCGCGGCGTTTACGCCCTCATCTTCGATTTCGTCCAACGAAACAAG
ACAATGTCGTGAGGCCACAGAAACTCGACCGTTGGCGCTCCATGCACGAA
ATGCGTTCCCTCATGCTACTCTAACACCTGCTGTCTCGGACACTTTATTG
CCCGCCATATTTGCATTACTCCTCGCTCTCATGGTCGGGGAAGGCGGTCA
GTTTGTTGAACGGAAATTAGGTGTGCCAGGAGCGGCGGCAGGAGCCATCA
CCGCTCTGTCTGCTGGCGTCTACGGCCTAATTAGACGTCTTGCTCCCCGA
TGCTTCCTCCGCCTTGCCCTACCAGTGGGGGCTATGTCGTCCCTTCTCTT
CAGTCTCTTCTTCGCGGCCATTGGAGCGGGTGCGTCGCTGATGCACTTGG
CCGAGTCGGGACCAGTGATCGTTACCCTTATGAGTGTCAGCCTGCTCGTC
CACTTACTCACCACCATGCTTGGAATCCACGTCTACAATCGATTTGTCCC
CTGGCCCGCCAGAATAAGCGTGGATGAGGCGGTGATAGCCTCCAATGCGA
ATGTGGGTGGCCCCGCGACCGCAGCGGCGATGGCTGGTTCCATGGGCCGC
GCCGATCTGGTGCTGTCGGCGGCGGCGACGGGGACAGCTGGTTACGCTGT
AGCCACTTTCATTGGGGTGGCTCTCTTTAAATTCTTGGCTTCATGAATCA
AAAGTACTGAATGAAGGAAGGGGTGTAGGTCTGAACGTGCTATAAATAAA
TCCAAGATTTTGACGA
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Coding sequence (CDS) from alignment at KK037251.1:252259..254074-

>rna9065 ID=rna9065|Name=rna9065|organism=Nannochloropsis gaditana|type=CDS|length=1593bp|location=Sequence derived from alignment at KK037251.1:252259..254074- (Nannochloropsis gaditana)
ATGCCTTCGTTCGGTAAGAGCTCTTCTTTCGTGTTGCCTGTAATAAAGGG
ACGACGCGGCTTCAAATTCCACGCACGCCCTTACATCTCCCCACGAGCAA
CTATGGCGCTGGTCTCGGGTTCTCATCGTATTACCTCCGCTATACCTATG
TTGACGTCAAAATTTCAAATATCGACACCTTTGCTTACTGCTGGTATATC
GCTTGCTGTCTCCTCCTTATTTGGGATGCTTCTGGAGAGCAAAACGAAAC
TTGGTCGAGCCTTGGGAGCTTCGCTCATTGCATTCTTATCGCAATCCCTG
TTATCCAACATCAACCTCATTCCGATGGAATCCCCAATTTATGATGCTTG
TTGGGGTAAAGTATTGCCTGCATCGCTCTCTCTTTCTGTCCTTCTTGCCG
TTGCTGCCGCCGGTACTCCCACTTCCTCCTCGCGCACCACTCAAGATCAA
TTAATTTCATTGAACAACATCTCCTCGATTAAGTCCGCCGCTTCTTCTTC
TTTGACTTCAGTACCTCAAAGGAATCAAACGTGGGCTGAATCTTCCCTTT
GGAAAGTTTTGCTGGCAAACGTCTTCGGAGCCTGTGGCGCGGTGATTGGT
GGTCTTCTAGCCTTCACCTTTGCCTCCCGTTGCCAAGACCAGTTTCCCAA
GCCGGTCCTGGCTAAAATCGTCGCCTCAATTGCCACCACCCACATCGGTG
GCTCCATAAACTTTTTCCAAGTAGCCCGTAGCGTGGGTCTTGACCGGGAG
GGGCAAGGCTTGCTAGGTGCAGTGGCTGGGGCAGACATATTCTTGATGGC
ACTGCATTTCGCGGCGCTTTTGGGCATTCAGAGAAACCCGACAGGGACAG
CAGCGTTTATAAATCGTAGTGATATTGACCAAACATCTTGGAAAGTGTCA
GTCGCGGCGTTTACGCCCTCATCTTCGATTTCGTCCAACGAAACAAGACA
ATGTCGTGAGGCCACAGAAACTCGACCGTTGGCGCTCCATGCACGAAATG
CGTTCCCTCATGCTACTCTAACACCTGCTGTCTCGGACACTTTATTGCCC
GCCATATTTGCATTACTCCTCGCTCTCATGGTCGGGGAAGGCGGTCAGTT
TGTTGAACGGAAATTAGGTGTGCCAGGAGCGGCGGCAGGAGCCATCACCG
CTCTGTCTGCTGGCGTCTACGGCCTAATTAGACGTCTTGCTCCCCGATGC
TTCCTCCGCCTTGCCCTACCAGTGGGGGCTATGTCGTCCCTTCTCTTCAG
TCTCTTCTTCGCGGCCATTGGAGCGGGTGCGTCGCTGATGCACTTGGCCG
AGTCGGGACCAGTGATCGTTACCCTTATGAGTGTCAGCCTGCTCGTCCAC
TTACTCACCACCATGCTTGGAATCCACGTCTACAATCGATTTGTCCCCTG
GCCCGCCAGAATAAGCGTGGATGAGGCGGTGATAGCCTCCAATGCGAATG
TGGGTGGCCCCGCGACCGCAGCGGCGATGGCTGGTTCCATGGGCCGCGCC
GATCTGGTGCTGTCGGCGGCGGCGACGGGGACAGCTGGTTACGCTGTAGC
CACTTTCATTGGGGTGGCTCTCTTTAAATTCTTGGCTTCATGA
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Synonyms
Publications