rna9062, rna9062 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9062
Unique Name	rna9062
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3533
Alignment location	KK037251.1:246676..248516 +

Link to JBrowse

Properties


Property Name	Value
Product	plasma glutamate carboxypeptidase
Orig transcript id	gnl\|cribi\|Naga_100012g15.1914.mrna
Orig protein id	gnl\|cribi\|Naga_100012g15.1914
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:246676..248516 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g15	gene8789	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9062	rna9062-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21582.1	cds9032	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:246676..248516+
coding sequence from alignment at KK037251.1:246676..248516+

mRNA sequence

>rna9062 ID=rna9062|Name=rna9062|organism=Nannochloropsis gaditana|type=mRNA|length=3533bp
GAGGAGCAACTTTACGGTCACTGTGTACCCTGTGCTGTGCCTGATCTTGG
CGGTCTGCGCGGTCGTTACGCGTCTCACCACCAGCAATTTACACACAGGC
GGCCAAGCAGAGAGTAGAGACTCACTGCGAAGGATACGTGTGCAGTTTCA
ATTGAGTGGTCAGGGAATACTACCAGCACTTTCCCTTCAATTTACCTGTC
TCGCAGGACGCTCCACTTCAGGAAGTCCTCCCCGCTAAAAGACACCCACT
ACACAGTGTCAGAAGCACAATGCCGTCACAGCAACGACAACGAAGGAGAG
GGCACGCCCCCTCTTTGAGTATGGTGGGCTTGACCGCTGCTTTGAGCGCA
TTAGTCGCAGGGCAAGCAGGTGCCTCGAGGGTAGCCAAGTCGGCTGGCAA
GCCCTCTTTTTTCCTTCAAGACCCAAGCGATGGCTCATGCCTAGCAGGTG
GCGAGTTCAAACGCTGTGCGATTGACACATTGTGGTACGTGCAAGGAAAA
CCGGGTCATTACCAAATCCATCATCGGCCAGTGGAAGAGACAGACGAGGA
ACTCTGCCTAGACAAGAAATCGTGCAATGCAGACAAGTCGGACGTACGCC
TGGCCTCCTGCAAGCACTGCGGCGCCACGAATTGGAACATCTTGGGGGAC
TCGGATACCGGCTACGTGCTGAGCGAGGGGGACGGGAAGTACTGCCTCAT
GCGGGAGAAAGGCAGCAAGAAGACGAAGATGGTTCTGTGCGAGAAGGACG
GGTACACCGCTCTACACCTGCAGTTCGCCAACAGGGACGATATCAAGGCC
ATGTCTTCTGTCGGGGCCCGTCTGATCACGGCCGCCTCGGACGGCGACAA
GAAGCTGATCAAGAATTACTTGAAGAACAAGGTGGACGTAAATAGTCGAG
ACTGGGACCAACTGACGGCCTTGATCGCCGCGGCCTCGGCAGGACACTTA
GATATCGTCAAATTGCTGTTGGATGCAGGTGCGGACGTGAATGCCAGGGA
CAAGGACAACATCACTGCCCTGATGGAAGCGGCGATCATGGGCCACAAAG
ACATCGTCAACCACTTGATCAAGAAGGGGGCGGAGGTAGAGGCGACTGCG
GCGTCGGGGGTGACAGCCTTGTGGCTGGCCGCAGGGGAAGGACGGGACGC
GATCGTATCGTCGTTGGTCTCGGAGGGTGCGGACGTGAATAATCAGCGGT
CCGATGGGATCACCACCTTAATGGCCGCCGCCGTGGGGGGTCATTATAAG
ACGGTCAAATTTTTGGTCGACAAGGGCGCGAGGATCGAGGAGAAGGACCA
GGAAGGCCTGACAGCCCTGATCAATGCGGCGGAGATCGGCTCCGAGGACA
CTGTCTCCTACCTTATGGACAAGGGGGCCGACGTGAACGACATGTCCACG
TCTGGCTTTACCCCTTTGATCGTCGCGGCGGCGGGGGGGCATTTGGGCGT
GGTCAAGAAGCTGCTGGCGGCCAAGGCGGACATCAACCAAGAGCACCCCG
AGGGGGTGAACGCGTTGATGTACGCGGCAGCGGGAGGTCATGTCCCCGTG
GTGCAATTGCTGATCGAGGCGGGGGCCGACGTGAACCAGCTCCATTCCCA
CGGGGGCTCAGCGCTGATGGAGGCCGCCACCTCGGGCAACCAGACGGTGG
TGTCTCTGCTGATCGAGAAGGGGGCAGACTCCACGTTGAAGGACAAGGAC
GGACTGACGGCGCTCATGTCGGCAGCCTCCTTGGGCCACACGGAGGTGTG
TAAGCTGCTCCTTGCGCAACCCGGCGTGGAGCCCAATGCCATGGCGAATT
CGGGGGGCACTGCCCTCATGTTCGCGGCAGCAGGGGGTTTTGTGGACGTT
GTGGAGCTCTTGCTGGCTCACAAGGCAGACGTGAATGCCCGGGTAAAGGC
GACGGAGGATTACAAAAAGTACGTGGAGGACGGCCTGAAGGCGGGCACGG
AGGGGGTGGAGGAGCACAAAGATGACGTGACGGCCTTGATAGTAGCGGCC
TTGGGGGGCTCGGCGGAGGTGACCAAGATTCTCTTGGAAGCGGGGGCGGA
CGTGCGGGCAAAGGACCAAGATGGAACGACGGCCCTGAAGAATGCAGTGA
AAGGGAACCATGCGGACGTGGCCACGGTGCTAGTGGAGTGGGGGGCGGAC
CCCAACGAGCTCTATGTGGACGAAGACGGGGTAGAGCACAACCTCCTGAT
GGACGCCATCATCGTGGAGAATGAAAAATTTGCGAAGCTTTTGCTCGAGA
AGGGGGCGGACATGACGCAAACCACCAAGCACGGCATCACCACCCTGATT
CAGGCAAGCCACAAGGGTCTGGGGGAAGTTGTGCGTATCCTGATCGAAGG
AAAGAAGGTGAATGTGGACGCGACTTCGGACGAGGGGATTACGGCATTGG
TGGCAGCGGCAGGGGAGGGGCACTTGGAGATCGTGGAGATGCTGTGCACG
GAGGGCAAGGCCGAGGTGAATGCCAAAGACAAAGACGGGACGAACGCCCT
CATGGCTGCGGCTGTGCGTGGCCACAAAGACGTCGTTGATGTCTTGTTGA
AGCATGGGGCTGAGGTGAATGCGCAAAATTCAGACGGGCATACCGCCCTC
TTTTTCGCATACAACGGGTTGAACCAAGTGGCGTCGCTTTTGGATAAGTA
TGGGGAGTACGTCCAGGGTGAGAATGACAATAACACCAAAATTATCAAAG
AGGCTCTAGAGACGCACACGCAGGTAGTGGATCTTTTAAAACTTTCGGGG
GCAGATGAAAACTTGAAGGACAAGGAGGGTCACACGGCGGCAGACTTTGG
ATACAAGCGTGTGTCCTCTGGAGAGGCCGAGGAGGCTGCGACAACGGGAG
GAAATGAAGGGCAAAAAGTGAAAGAGGAGCTCTAAGGGAAAGAGAGGGGA
AAGATGCTTGAAATTTGCTCTGATGCGCACGAATATTAATCCAAGAAAGA
AGATTGGAGTGGGCTGGATTAACAGAGCAACTAAACAGTAGAGAAGATAT
GGATTGGGAGGTACAGCATTTCTAGGACGAAGGAGAAGGAGTATCTGAAG
GCAAGTCGAGCTTCACGCAGTGGTAGTCCGAAGATAAGGTCGGGCGCCGA
AGAATCAGAGATGAACATATCGAAGGAACTTGACGCAGCAAGAAAGTTCC
GAATTCTGGCTTCCCAGCAAGTAAGGGACCAATCCAGGAAATGTGTTTTT
TGAATATGTCATTCTTTGTTCCTGGTACAAGAACTGTATTAAACCGAGAC
CATACTATAAACGTGAGGCACTTGATCTCTTGGTCACAGTGTGCTGCTAA
GGGTAAGATTGGAAAAAAGCGGCGCGGGAGGAGGTAAAAAAAGGGCGAAC
CGGTGAAAATTTGAAAAATCGAATTCCGACAGTTGAAGTCGGGTATGCGT
CACACTTCATTTCTATGCAGTTTTCGCATCTTTCTGCTATTCTTTCATGG
ACGATTCAGGTCAAACCCGCTACCTAAATAAAATGCTTTTTCAAAAACCC
GCATGTCGAGCGGCTTTTCCCGTACTTAATATC

protein sequence of rna9062

>rna9062-protein ID=rna9062-protein|Name=rna9062|organism=Nannochloropsis gaditana|type=polypeptide|length=532bp
MPLDRDKCTCMLDRCFCLRDRAAMPMMAARHACVSFLVLVAVIMAHQTTA
KPSPSDYATEAQSIINSLLPGGSCADQAWHKLAALTDTVGNRVCGSPSLE
RASSYMLSVWQAEGFDNVHGENVTVPHWQRGDEECTMLSPRLGYRMQILG
LGTSIGTPEGRPIEAHVLVVRNFDELAAFGKAGQVQGKIVLLNYACDWSS
NPVGCYGACAKYRGEGASRAARWGAVAYLVRSLASASIGSPHTGMQRYAS
SKAEDQIPAAAVTVEDAEALARMQARGQDVVLRLSMGAQNLPARQARNVV
AEWRGRELPDEVVLLSGHLDSWDVGVGAMDDGGGLVISWQALSTLRALHW
RARRTIRVVGWVGEEFGGIGGRQYFDDHREEKVVLVIESDMGAFRPRGLS
FSGGVDAASVMADVGSLLGGINATLVARDGKGYETDTQPWKAVGVPGASL
ISENERYFAYHHSHGDQMNVLQPGDMDLAAAVFAVTAFVVADLDEALPKG
DERGEGEKGKMKEEKERQRMRKGNAGSGLAVS

mRNA from alignment at KK037251.1:246676..248516+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9062 ID=rna9062|Name=rna9062|organism=Nannochloropsis gaditana|type=mRNA|length=1841bp|location=Sequence derived from alignment at KK037251.1:246676..248516+ (Nannochloropsis gaditana)
GGCTTGTCATGTCCTTGCTCTGTGTCGCCGttcgaggggggcgagggccg
GTCCGGGGCCGTGACTTTTTTTTCAagcccccgggggggggagaaaaggg
ggggaaataaaACACACTCGAGGTAATTTTCCAGGCATGCCGCTAGACCG
TGACAAGTGTACGTGCATGCTTGACAGGTGTTTTTGCCTGCGGGACAGAG
CAGCCATGCCCATGATGGCCGCAAGACATGCCTGCGTATCCTTTCTCGTG
TTGGTAGCAGTTATCATGGCACATCAAACAACCGCGAAGCCCTCTCCGAG
CGACTACGCTACCGAAGCGCAATCTATCATCAACAGCCTTCTCCCGGGAG
GTTCGTGCGCAGATCAAGCGTGGCATAAATTGGCAGCCTTGACCGACACG
GTGGGGAATCGTGTTTGTGGTTCTCCCAGCCTCGAGCGGGCCAGCTCCTA
CATGCTAAGTGTTTGGCAGGCGGAGGGCTTCGACAACGTCCACGGAGAGA
ACGTGACTGTGCCGCACTGGCAGCGCGGGGACGAAGAATGCACCATGCTG
AGTCCGCGACTTGGTTATCGCATGCAAATTTTGGGATTGGGAACGTCCAT
CGGAACTCCTGAAGGGCGACCCATAGAAGCGCATGTACTGGTTGTGCGGA
ATTTTGACGAATTGGCTGCTTTTGGAAAAGCCGGGCAGGTCCAGGGGAAA
ATAGTATTGCTGAATTATGCCTGTGACTGGAGCTCAAATCCCGTGGGGTG
CTATGGTGCCTGTGCCAAGTAccgaggggagggtgcgAGTCGGGCGGCAA
GGTGGGGGGCTGTAGCCTACCTGGTCCGCTCTCTGGCTTCGGCCTCCATC
GGCTCCCCGCACACCGGCATGCAAAGGTACGCATCCAGCAAGGCAGAAGA
CCAGATCCCTGCCGCGGCCGTCACGGTcgaggacgcagaggcccTGGCGC
GCATGCAAGCCCGGGGACAAGATGTGGTTTTGCGCCTGTCCATGGGGGCA
CAAAACCTGCCGGCTCGACAAGCCCGCAACGTGGTGGCcgaatggagggg
aagggagctcCCGGACGAGGTGGTCCTCCTCTCGGGCCATTTGGATTCGT
GGGACGTGGGCGTGGGTGCCATGGACGACGGTGGCGGGCTCGTGATAAGT
TGGCAGGCCCTGTCCACCCTGCGGGCCCTGCACTGGCGGGCGCGCCGGAC
CATCCGGGTGGTAGGttgggtgggggaagagttTGGGGGCATCGGGGGCC
GGCAGTACTTTGATGACcaccgggaggagaaggtagtGCTGGTGATTGAA
TCGGACATGGGCGCTTTTCGACCCCGAGGCTTGTCTTTCAGTGGGGGGGT
GGACGCGGCTTCGGTGATGGCGGACGTGGGCAGTTTGTTGGGAGGGATCA
ACGCTACCCTCGTCGCGCGCGATGGGAAAGGGTATGAAACGGATACGCAG
CCCTGGAAGGCAGTGGGAGTGCCGGGCGCGAGTCTGATAAGTGAGAACGA
GCGCTACTTTGCCTACCACCACTCGCACGGGGACCAGATGAATGTCTTGC
AGCCTGGGGACATGGACCTGGCCGCCGCTGTCTTCGCGGTGACAGCATTC
GTGGTCGCGGATCTGGACGAGGCCTTACCCAAGGGagacgagagagggga
aggagagaaggggaagatgaaagaggagaaagagaggcagaggatgagaa
agggCAACGCAGGGTCGGGGCTGGCGGTATCCTGAGCTCTTGGTATGTAA
AGTCTTCGTGTATAGCAAGCTGTGATCATGCATTTTCAAAGTAAATTTAG
GAAGACACGGTAGAAAAGTAAACTCTCTTGAATGCTTTCAA

Coding sequence (CDS) from alignment at KK037251.1:246676..248516+

>rna9062 ID=rna9062|Name=rna9062|organism=Nannochloropsis gaditana|type=CDS|length=1599bp|location=Sequence derived from alignment at KK037251.1:246676..248516+ (Nannochloropsis gaditana)
ATGCCGCTAGACCGTGACAAGTGTACGTGCATGCTTGACAGGTGTTTTTG
CCTGCGGGACAGAGCAGCCATGCCCATGATGGCCGCAAGACATGCCTGCG
TATCCTTTCTCGTGTTGGTAGCAGTTATCATGGCACATCAAACAACCGCG
AAGCCCTCTCCGAGCGACTACGCTACCGAAGCGCAATCTATCATCAACAG
CCTTCTCCCGGGAGGTTCGTGCGCAGATCAAGCGTGGCATAAATTGGCAG
CCTTGACCGACACGGTGGGGAATCGTGTTTGTGGTTCTCCCAGCCTCGAG
CGGGCCAGCTCCTACATGCTAAGTGTTTGGCAGGCGGAGGGCTTCGACAA
CGTCCACGGAGAGAACGTGACTGTGCCGCACTGGCAGCGCGGGGACGAAG
AATGCACCATGCTGAGTCCGCGACTTGGTTATCGCATGCAAATTTTGGGA
TTGGGAACGTCCATCGGAACTCCTGAAGGGCGACCCATAGAAGCGCATGT
ACTGGTTGTGCGGAATTTTGACGAATTGGCTGCTTTTGGAAAAGCCGGGC
AGGTCCAGGGGAAAATAGTATTGCTGAATTATGCCTGTGACTGGAGCTCA
AATCCCGTGGGGTGCTATGGTGCCTGTGCCAAGTAccgaggggagggtgc
gAGTCGGGCGGCAAGGTGGGGGGCTGTAGCCTACCTGGTCCGCTCTCTGG
CTTCGGCCTCCATCGGCTCCCCGCACACCGGCATGCAAAGGTACGCATCC
AGCAAGGCAGAAGACCAGATCCCTGCCGCGGCCGTCACGGTcgaggacgc
agaggcccTGGCGCGCATGCAAGCCCGGGGACAAGATGTGGTTTTGCGCC
TGTCCATGGGGGCACAAAACCTGCCGGCTCGACAAGCCCGCAACGTGGTG
GCcgaatggaggggaagggagctcCCGGACGAGGTGGTCCTCCTCTCGGG
CCATTTGGATTCGTGGGACGTGGGCGTGGGTGCCATGGACGACGGTGGCG
GGCTCGTGATAAGTTGGCAGGCCCTGTCCACCCTGCGGGCCCTGCACTGG
CGGGCGCGCCGGACCATCCGGGTGGTAGGttgggtgggggaagagttTGG
GGGCATCGGGGGCCGGCAGTACTTTGATGACcaccgggaggagaaggtag
tGCTGGTGATTGAATCGGACATGGGCGCTTTTCGACCCCGAGGCTTGTCT
TTCAGTGGGGGGGTGGACGCGGCTTCGGTGATGGCGGACGTGGGCAGTTT
GTTGGGAGGGATCAACGCTACCCTCGTCGCGCGCGATGGGAAAGGGTATG
AAACGGATACGCAGCCCTGGAAGGCAGTGGGAGTGCCGGGCGCGAGTCTG
ATAAGTGAGAACGAGCGCTACTTTGCCTACCACCACTCGCACGGGGACCA
GATGAATGTCTTGCAGCCTGGGGACATGGACCTGGCCGCCGCTGTCTTCG
CGGTGACAGCATTCGTGGTCGCGGATCTGGACGAGGCCTTACCCAAGGGa
gacgagagaggggaaggagagaaggggaagatgaaagaggagaaagagag
gcagaggatgagaaagggCAACGCAGGGTCGGGGCTGGCGGTATCCTGA

Synonyms

Publications