rna9058, rna9058 (mRNA) Nannochloropsis gaditana

Overview
Namerna9058
Unique Namerna9058
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length942
Alignment locationKK037251.1:230129..232668 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100012g10.1972.mrna
Orig protein idgnl|cribi|Naga_100012g10.1972
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:230129..232668 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100012g10gene8785Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9058rna9058-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21640.1cds9028Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9058 ID=rna9058|Name=rna9058|organism=Nannochloropsis gaditana|type=mRNA|length=942bp
ATGAAGCTTACTTCCCCATCAGCTGTGATTGCTGGAGTTGTTTTCTTCCT
TTCCTGTAAACATTTGTTGACCAGCGCATGGATAGGTCCTTTCGCAACAG
CACCATCGGCCTCATTACCTCGGGACCCGCCACCCGTTGTCATATGTCCT
GGTTTTGGCAATGACCAGATTGACTACCTCAATCCCATGAATCTCGGCGA
AGAAGCAGGCATGGTGCAGGCGTTACGCCGCCGTGGGTTCCCTGTTTATG
TTGTGCCTGTGAAACGCACAGACTGGCTGAAGTTTGCCAATGGCCTGTTC
ACGCCATCCTTCTGGTCTCAGACGATGACACCCCGCGACCTCTCTTTCGG
ATGGTACTTGAACAAGGTGGTGCAAACTGTCGAGAGGGCCGCGTCGGAGC
ATCCTGGACGCAAAGCCTTGGTGGTCGGGCACAGCGCGGGCGGATGGCTG
GCTCGGGCGGCCTTGGGGGACGGGGCATGGACAGGAAAAGCCGCCAAGGA
GGTCAGAGACCTTGTTCAAGGTTGTGTGACGTTAGGAACCCCCCACTTGC
CTCCTGCCCCGCCCGGCGTCTGCGTCACTCGCGGAGCCCTGGGTCACGTC
CATCTCAACTACCCGGGAGCCTTCCTGAAGCCCCAAGGCCTTTTTTACAT
GACCGTGGCGGGGGTGGCCGTGGAGGGACGGAGGGAGCCGCAGGGGGCAG
GGCGGAGGGAGAGGAGGGGCGGGAGCATCGAGGACTTCGCCTTCCGCTCC
TACGTGCAGGTCTGTGGGCGTGGCGACGTGGTCGGCGACGGCGTGGTCCC
CTTGGAAGCGGCCCATTTGGAGGGGGCCAAACAAGTGAACCTGCAGAATG
TCTTCCACTCCATCAACGCGCCTAAGGCGTGGTATGGGAGCGAGGAGGTG
ATCGACTCGTGGCTGGGGGAGGTGGAGGGTATTCGGTATTGA
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protein sequence of rna9058

>rna9058-protein ID=rna9058-protein|Name=rna9058|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MNSVRQLASVTQTAARPVARRHVRNLSTSASPSGTGVPAGTFAGKCRCWP
NPPCHHHATGACGYSQFECDGGAGGGCSPAQYHQAAASGSSSIQTSTSQI
LAGASQAVGRQCQTLLNGMLFDTDRAAAMTGKDRSFSYSR
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mRNA from alignment at KK037251.1:230129..232668-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9058 ID=rna9058|Name=rna9058|organism=Nannochloropsis gaditana|type=mRNA|length=2540bp|location=Sequence derived from alignment at KK037251.1:230129..232668- (Nannochloropsis gaditana)
CGTTAAATTTTTCCCTCTCGCCCCAGCCTCAACATCGATCTTGGACCTCA
GTTCTTGAATCGAGGTATCTTCGGGGGGGCGTGGAGAGCCATCCAATGAA
AGGCGCGTGTCCTCAATTGTCACGATGGTGTCTCAGACATGCAGAAACAT
GTGTGTAGGGTTGAAATCTTGGTAACTCGGTGTCCAAAGACATTGTTCTG
CCGAAAGATATGGGGCAGAGGGACTGTCGCCTTCTTGTGATGCTCAGGCA
CTTTCTTTGACCATCGTCGGCGCCATACCCCGCAGATATTTTAAGTCTTG
CAATTCGATGTCAATTATCAGGGTGATCCCGTGCCATTAGTGGTGCGCAT
GATTATGCACATTTCTATTTTCGGAGCAATGAGGGAGGTACATGCTGGTG
TTGTCGCTAGACAGGCCAGTTGGCACGGAGATCAAGCTTTGCCCCGTCTC
TTGGCCTACTCTCAGACCCTCTGCCCTATTTTCTGACACCAGAAATCAAG
TCCCTAAAAAAATCCACACATATCCCTTCACACTCATACAATTCATTTAA
TTTTACAGGTCCGCATTGGTCTAGACCGAGGTCTGCCTGTGTTATCATTC
CCTCGAAACAAGCCCTTTCCTAGTCTTCACCTTTCGAGAAGCGCTCTGGA
AAGCGACACGGCACAAGCTTTTTTCACGCAAGTACCATGAATTCCGTCCG
ACAACTTGCGTCTGTAACGCAAACAGCAGCGCGACCAGTCGCACGAAGGC
ACGTCCGCAACCTTTCTACGTCCGCTTCGCCTTCTGGCACAGGCGTGCCC
GCGGGGGTAAGTGGAAAGGGCGAGATCGGGTGTCGAGTCCCATGCTGCAC
TTCGCTATTCTGTTGTCATCAGCGTACCAGACATAGTTCACATTTAATAA
TATTGACACTCTTGACGACACCTTTAAATACTTTTCAAGACGAAGTTGGC
TTTTGTCGAACTTGCCCACGTATCACACTCAACGTCCCCCTTCCTATCTC
CTCCCTCGCACCACAGACATTTGCAGGGAAGTGTCGTTGCTGGCCAAACC
CCCCTTGTCATCACCATGCAACAGGGGCTTGCGGTTACTCTCAGTTTGAA
TGTGACGGCGGAGCAGGGGGGGGCTGCTCTCCTGCCCAATATCACCAGGC
AGCAGCTTCGGGGTCCTCTTCCATACAAACGTCCACCTCCCAAATCTTGG
CGGGCGCATCGCAAGCTGTGGGTCGACAGTGCCAGACTCTTTTGAATGGA
ATGCTGTTTGACACAGACCGTGCGGCGGCGATGACTGGCAAAGACAGGTC
TTTTTCGTACTCAAGGTAGGCCGCAGGTTATCAGGAGCCAAGCCGCAGCC
AACCTGCGGCAGGTGTTTGTCGCTGGATGTTGTAGATGTCATAACGGTGT
GTGTACCGGTCCAAGCTGAGATGATGCCGTTAGGGAGGAGGGCGGGACGC
GGCGTGCTCGGACTGGTTCAAGATTTGTACATAACGTACCATAGTGTGGG
TTCCCCGTGGGAGGGGGGCAAGGAAACGTGAGGCAAGGAAAGGGGCGAGA
CGCACAAAATTTGAATTTCAGTACGTGCTGTGGGTTTCGTCGCGGGGTAA
TATGGAGAGTTTGTGCGCGATTCATAATGGAACGGGCACGTTTTGCCCTT
GCCGCCCTGGGAGCCGAGGGGGCAGGAAGGGAAGGGGCCTCGCGCCAAAG
CGGAAATTGTACCACCGACGGGGCGAATATGGTAGCGACGTTGAAGAAAA
GCATTGGAATTGTCCATGCGTGCACGAGATAGTGTGAAAAGATGCAGATA
TGGCTAGAATCAGCAGCGTAATTTTTTAGTTTGTAGCCGTGTCAAACACA
ATGTTCAAAAAAGCGTGAGACAGTCCACCGCAATTAAAAAATGGCACTCA
CAAGAGAGATCAATACCGCATGTAAAACGGCACGCACAAGAGAACGCATC
ATGAGAGACGCATCGTAAAATTATCTTTGGCAGAAAGGCCTAACAGCAAA
AGAAGAGCGACACCCGAGAGTCCAGTGTGCACGCACCCGGACGGGCTGCT
GTCGACGCCGTGCGCTTGGGATGGGGGCCCGGAGAGCACCACAGCAACCT
TTAAAAAGCAGCACCACAGCTAGCATGCACCGACGAAGAGGGATTCTGGG
GACGTTTATTCCCTCCCCCGCTCTTGCTGTTCCTGATCCTTCGTTGTCTT
GGGAACCACGAGAGAGGGGGGAATGGATGGAAATGTCACGGATACATTTG
CATGGCAAGTGAAGCGGTTGAAGGAGGACGCGAGATGCCTTCATTTTCTA
CCTGGGGCGTCGAATGGGAAATACCCGGGATAACGCAGGAAATACCTCTT
TTTCATAGGGAGTGCCTTACAGAGACGCGCTTAGGAATGAGCAATAATTG
AGAAAATGAGCCCAACGGATGTTATCAATTTTCTGTGCTGAGAGATCCTT
CACAGCAACACGCTTTACTTCCCAACAGTGCGCACATTCATTATTGATTG
CCAGAAATCTAGTTTAAAATTCTTGAAGATCACGGACCCA
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Coding sequence (CDS) from alignment at KK037251.1:230129..232668-

>rna9058 ID=rna9058|Name=rna9058|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at KK037251.1:230129..232668- (Nannochloropsis gaditana)
ACATTTGCAGGGAAGTGTCGTTGCTGGCCAAACCCCCCTTGTCATCACCA
TGCAACAGGGGCTTGCGGTTACTCTCAGTTTGAATGTGACGGCGGAGCAG
GGGGGGGCTGCTCTCCTGCCCAATATCACCAGGCAGCAGCTTCGGGGTCC
TCTTCCATACAAACGTCCACCTCCCAAATCTTGGCGGGCGCATCGCAAGC
TGTGGGTCGACAGTGCCAGACTCTTTTGAATGGAATGCTGTTTGACACAG
ACCGTGCGGCGGCGATGACTGGCAAAGACAGGTCTTTTTCGTACTCAAGG
TAGATGAATTCCGTCCGACAACTTGCGTCTGTAACGCAAACAGCAGCGCG
ACCAGTCGCACGAAGGCACGTCCGCAACCTTTCTACGTCCGCTTCGCCTT
CTGGCACAGGCGTGCCCGCGGGGACATTTGCAGGGAAGTGTCGTTGCTGG
CCAAACCCCCCTTGTCATCACCATGCAACAGGGGCTTGCGGTTACTCTCA
GTTTGAATGTGACGGCGGAGCAGGGGGGGGCTGCTCTCCTGCCCAATATC
ACCAGGCAGCAGCTTCGGGGTCCTCTTCCATACAAACGTCCACCTCCCAA
ATCTTGGCGGGCGCATCGCAAGCTGTGGGTCGACAGTGCCAGACTCTTTT
GAATGGAATGCTGTTTGACACAGACCGTGCGGCGGCGATGACTGGCAAAG
ACAGGTCTTTTTCGTACTCAAGGTAGATGAATTCCGTCCGACAACTTGCG
TCTGTAACGCAAACAGCAGCGCGACCAGTCGCACGAAGGCACGTCCGCAA
CCTTTCTACGTCCGCTTCGCCTTCTGGCACAGGCGTGCCCGCGGGG
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Synonyms
Publications