rna9053, rna9053 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna9053
Unique Name	rna9053
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3578
Alignment location	KK037251.1:212752..215474 +

Link to JBrowse

Properties


Property Name	Value
Product	apoptosis inducing factor
Orig transcript id	gnl\|cribi\|Naga_100012g4.1906.mrna
Orig protein id	gnl\|cribi\|Naga_100012g4.1906
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037251.1	supercontig	KK037251.1:212752..215474 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100012g4	gene8780	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna9053	rna9053-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21574.1	cds9023	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037251.1:212752..215474+
coding sequence from alignment at KK037251.1:212752..215474+

mRNA sequence

>rna9053 ID=rna9053|Name=rna9053|organism=Nannochloropsis gaditana|type=mRNA|length=3578bp
GCATTGGCCCCGGCCGCATCCATATGTCTCACTTATTTCGCTTTCTTATC
ATGCCTACCCATGCATAAAGGACACAGGGGTGATAGGATTGATAGAGTGA
CGACCCTTAGATGCATTATGCGCCGATTTGTAAGCTCGCGGTGCTGGTGT
TGGAGGAAGGCAAAAGCGATGGGTTCTGGTCTCCCATTCCTCCTGGTGCT
TTTTATTTACTTTCTTGAGAGTCATCCTACGCAAGCCATCACACGCAATT
CCCGGGTAGTAGTCTCACATCTGCAAGCGACGCCGTCTCTGTCGCCGTCG
TTGACCGTGCGCTTCGTGCGCGAAAAGAAATGCATGCCTTGGTGTCACGG
CGTGAGGGGAGGAGGTCTGGATGGCCGGAGAGTAGCAACCTCAACAAGGG
CAAAAGAAGGGGGGAAAGCAGTACCACCAAATCCGCCCTCCGCCGGCAAT
GAAAAAGCGCGAGCGGGACCCAAAGAGAACACAGAAGCGGACACGCGAAG
GTACTGGAGCCACGTGATCCCAACGTGGAAGGGGGGGGGGGCGGACCAGG
GAGGAAGCCCTCGGGAGGGAAACAGAGAAGAAAAGTGTTCAAATGGACAC
AAGGGAGACGGAAGCCAAAATACGCAGCCGTCCCTTCGGCAAGAGGATGA
TTTTTTCGAGGACATGAAGGAGTACTTCCGCTCCATGACTCCTTCCCCGC
CTCCCCAAGACCACGACGGGGGAAGACACCCTCCCTTCTCCTCCCCCACC
GGGAACAACACCAACCCGGCGTCCACCCCACAGGCCCCATTATCTGGGAC
CAAGACCCAACCGGGTCCCCTCTCCCAAGGGACAGGGCTCACGGACCCGC
TCCTCCTCGACCGGGTGTTGGCCGGCGTCACAGCCGCCGCCCTGGCCCTG
CCCGGCCTCCTGCGTGTGAGAGTGGCGGTAGTCGGCAAGTTCTTGTGGCG
GATCGCGTCCTACAAATTCCCCGTCGCCCTCGGTGCCTACGCGTGCGCGG
CCTTGCTGGCTCGATGGACGGTGGGGAAAGTGCAAGGGATGTGGCGCCGC
CGCCCCGTCCGAGACATGCACCTAGATTCCGCGGACAGGGACTACGAGCG
CTACGGCGTCATCCTCCAACGCGAGGCCCACGAATATTTCAAGTACCTGC
CCGCCTCTGTCTCTTCCTCCCCATCGCCCTCGAGCGGGGCGAAGAGCAGC
CAAACGGGGATGCTCCAGCTCTTGACAGCGGCCTTGGAGCTCCCCTGCCT
CCTGACCCGGCGGGACGAGTACGTACAATCTCTTTCCAAGGCCGTCACCG
AGCTCTCCCACGCACAATCCCCGCCCTCCTTCCCGCCCTCCGTCCTGCCT
TCCCCCGCCGCCTCCCCCCTCGTCGCCGCGCTCCGTACGGACTCCCTCTC
CTCCAACACCTCCCTCCCGCCCTCCCTCCCGCCCTCCCTCCGTCAACCCC
TGGCCTCCCTCCCCGTCGTCGACCAAGGCCAGATCATTTTGAGCGTCCGT
CTCGGGGACGCGACCGCCCGCTTGGCGCGAGACGCCTTGCTGGGATCCGC
CAGGAAAGTCCAGGCCGCGCATCGGTATTGGCACGCCAGGTACAAGCCCC
GGCGGGGGTGGAAGCGCCGACAGCAAGCCGCCAAGCGCGCGGAGGCCTAC
GCAGCCTACAGCGGCTTGGGGCTGTTTGGAGGGGGGGAGGGAGGGGGAGG
AGGGGGTTGGTTCAGCTTTCCGCGCCAAGCGGAGAAGGAGGAAGGGAAGG
AGGACGGGGGGGAGGAAGGGGAGGAAGAGACGACCGAGGCCTTGACGGTG
GCCGCGGAGGAGGTCGGGGGACAGGAAGGGGTGTCCGACCCCGGTTCCCG
TCGAGAGGCCCACCGGGTGGCGGAGCTGGACGCCCGCCTGAAGGAGCACA
TGGAACGGATCGGATCGCTGGAGGCCCACCTCTTGAGCCGGCCCGAGCAG
GCGGGGGGCTGGTCGGTGGGGGACGCGGTGCGGTGGTCCTGTGTGGCCGT
GGCCTTGGCGGAGGCGGCGATGGAGGAGGTGGGCCGGCCGGTGCGGCGGG
CGGAGGAGCGGTGGTGGCGGGGGGAGAGGGAGGGAGGCGGGGAGGGAGGG
GTGGAGGGAGGGGGAGGGGAGAAGGTCTGGAGGGCCGTGAAGCAAGGCGT
TGGGGATGCGGTCCATGAAATGGGCCGGCGTTTACGGGAGGGAGGACGGT
CCCGGGACAAGGAGGCGGTGGAAGAGGGAAAGGCGGGTGAGGAGGGGTCA
ACTCCCGCCATGGCTCCCGAGGACAGCCCCTCCGTCCCTTCCGATGCCGC
CCCCGCCCCTCCTTCCCCGGTGAATTGGGCGAACCTGGGCGCACGCGCCT
CCCTGACCATCGGGCACGCGCTCACGCTCCGCAACCGGGTGGCGAGCCAC
TTGGAGACCCACGACCTGGACCGGCCCAAGATGAACGAATGGCTGGCGTG
GACCCTGCGGGGGGCAGCCTACGTCTTCTTCCTCCGGACGACGGCGGAGC
TCTGGTCGCGTCGGGAAAGTATCCAGGCCACCGCCGCCCTGACCAAGAAG
AACACGGAGGAGTTCTTGGCCTACCGGTTCTTGGAGCCCGGGAAAGCCAT
CCTGGAGGATTTGATCCTGAACAAGCGGCAGCGATTGACGGACGAAGGGG
CCATCACGGACGCCCAAGCCAGCTTGCGGAGGATGCTGAGCGATTTCATC
GACGACACCTACCCCCACATTGACCCCGCGACCAAAAAGGCAGCCTTGGA
GGCGATGGATATCTCCTTGGTCTCGGCGCAGTACGACAAGGAGATCCGGC
ACGCGGTACGGAACGTGTTCAGTGGGAAGATCGTGCGGATGCTTTTGATC
CAGATGCAGTACGTGAAGAAGGAGCTATTGGTGGCCATGGAGGCCATCGA
CGACCTCTACAACGCGAACAAGGTGAACCTACAAGCCTTCGCCGTCGTTC
CCGCGCTTCTCCTCACCTACTGCGCATACCGCATGTCACTCTACTTGTTC
GGTGCTCTTGCTTCACGTCGGATCAGCAACATATCGGGGGTGCATGCCTC
CCTCCGGCGCACCCTGCGTGATTTGGAGAGGCTCCTTATACTCGCACCAC
GACTCCCTCCCTCCGTCACTCCTTCCCTCCCGTCCTCCCTCGGTGCGAAA
ACTACCGTGTTGGACGACCGTCGGCTGGGAGAAGTGGTGCTGTTGGTGGC
AGATTTCCAGAACATTCTACGGGTCAACGCCCCCCGGCTGGAGAAGGGCG
TGCGACGGGCCCTGATGGAGGATATGAGCGACCTGCTGGGTGGGCCTGGG
CGGTTGACCGTGGAACAACAGCTGACTTCCTTGAACCGAGTCCGAAAGGC
CTACGCTTTTCTTCAGTCCAGGACTCCGGGGGGAGGTGCGGCGCTCTTTG
ACATACTGGCGTGAGGGACATGGGGCGTGAATAGTCCCAGCGACCTCGCT
CCCAAGTCTTTTGGGAGGAGAGCATGTTGAGAGGATTTAGAAATTTCAAT
GAATCACTGTGAAATGCGTTGTAAAAAAAATATGACAACGAGCCGATACA
ACATGCAAAATCCTGCCAAATATCCCGA

protein sequence of rna9053

>rna9053-protein ID=rna9053-protein|Name=rna9053|organism=Nannochloropsis gaditana|type=polypeptide|length=842bp
MLRWLVLLPTRTRRAVPCPLRSVHQGIACAVDEGRSQSNVLLCCLALAAI
SSGTLSSQNEADSKSRPESPAFSAEFIIHGRRLNVLLSPWLSTIAEDGPA
STNMDAAQHRRRDLTSSLATRRSAKYVIVGMGVTGSAALQALLECEPDAD
ITVVERGTQSADFEEPQGGRDRARKKEKGGGLGGFLRRGHQGKPSVKYLW
GTTVNSLDADGRILSLSDGSTLRFEKCLLAVGEGPVRVPPRYVERDIAGR
VTPLHRAEDRRVLGRSVAQGHHVTVVGSNWASVELASFLSDVGRRHGWGR
SSVTLVFPESTPLAKELPRYLSGLLMRRLERRGVEVIPHTSVKYIGRAMA
YEVQALRPSQPWSPPFDPEEDTGEGPRRKPTANNRPTEEQEPMASFDPIR
VYLTSKFASLDSTALLTDHVVVGGSSSQGRLPTFDFEGHPLEADAKTGAI
VVSHELQASSSVFVAGDAAHFPCTDLGKRVNVRSADHAYHSGWVAGMNMT
GRGVRYQHLPLFFGAIPRLGVRAAWVGQCDGSAETHGFWWKEGGKANGSG
GTGMARKRTRMGEDAPPSTSISAEEEKGLSERVKGAFQSLLGGEKDPKGV
VDNTSSALAAVGIGTTGWGGDSNTGRRVGIYRRTTTDRELGDLDAVVEAE
MESEALARAGGGKNFTPVNGTGIVFFVDPDGTVRGILGWGLPPPSTAGEK
GDQSESEVPSPSWSRTGGVGQIDNVLGGVIERARTAVGDGLRSGTTFKYD
MNSRQDTVSALRALAFEIIGPEALEQLGPKAPLYTYNSAKLLSNTADDTL
FRINNNSRSSADLMEEAYEAAVKGHMQPTPGTNTVPFPFNRS

mRNA from alignment at KK037251.1:212752..215474+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna9053 ID=rna9053|Name=rna9053|organism=Nannochloropsis gaditana|type=mRNA|length=2723bp|location=Sequence derived from alignment at KK037251.1:212752..215474+ (Nannochloropsis gaditana)
GCACACGAATTCGGCTTTTCCTCCAATAAAGCGCGCGCAACCAACAGTCA
CAGGTGTAATTTGCGCGCGTGATCGTCCCGTTAACTCTTCATACCAATCA
GTGGGCCCTTTCAATTCCTGTACGGATGCTCCGCTGGCTGGTCCTTCTGC
CCACAAGGACAAGACGAGCAGTCCCATGCCCACTCCGATCAGTACATCAA
GGGATTGCATGTGCGGTagacgaaggaagaagcCAATCAAACGTCCTCCT
TTGCTGCTTGGCTTTGGCAGCCATCTCCTCAGGAACGCTCTCGTCACAAA
ATGAAGCGGACTCCAAATCTCGGCCGGAATCGCCCGCTTTCTCGGCCGAG
TTTATAATACATGGGCGTCGACTTAACGTCCTTCTTAGCCCCTGGCTTTC
TACCATTGCTGAGGATGGCCCCGCTTCAACAAACATGGACGCAGCACAGC
ATCGTAGACGGGACCTGACGAGTTCTTTGGCAACTCGACGAAGCGCCAAG
TACGTCATCGTGGGTATGGGGGTCACGGGCTCTGCCGCTCTGCAGGCGCT
CTTGGAATGTGAGCCGGATGCCGATATCACTGTCGTAGAAAGAGGGACGC
AATCGGCTGACTTTGAAGAGccgcaaggaggacgggacagggctcggaag
aaagagaaaggcggaggtcTTGGGGGCTTCTTGCGCCGAGGCCACCAGGG
GAAACCTAGCGTCAAATACCTGTGGGGCACGACCGTGAATTCGCTGGACG
CAGACGGCAGGATCCTCTCACTCTCGGACGGCTCCACACTGAGGTTTGAG
AAATGTTTGCTGGCAGTGGGAGAGGGCCCTGTGCGGGTGCCGCCCAGGTA
TGTGGAGAGGGATATCGCGGGGCGCGTCACCCCCTTGCACAGAGCCGAGG
ACAGGCGGGTCTTGGGCCGGTCAGTGGCCCAAGGGCACCACGTGACCGTG
GTCGGCTCCAATTGGGCCAGCGTCGAGCTGGCGAGCTTTTTGAGCGACGT
GGGCCGGCGGCacggctgggggaggagcagcgtcACCTTGGTCTTCCCGG
AGTCCACTCCCCTGGCCAAGGAGCTGCCTCGGTACCTGTCGGGTCTCCTG
ATGCGGCGCTTGGAGCGCCGGGGCGTGGAGGTCATCCCCCACACCAGCGT
CAAGTACATTGGAAGGGCCATGGCGTACGAGGTGCAGGCACTCCGTCCGT
CCCAGCCctggtctcctcccttcgaccCCGAGGAAgacacgggggagggg
cccaggCGTAAACCCACCGCCAACAACCGCCCtacagaggagcaggagcc
cATGGCCTCCTTTGACCCCATTCGGGTCTACTTGACAAGCAAATTCGCGA
GCCTGGATTCGactgccctcctcaccgACCATGTGGTTGTCGGGGGCTCG
TCGTCGCAGGGCCGGCTCCCCACCTTCGATTTCGAGGGCCATCCTTTGGA
GGCGGACGCTAAGACCGGCGCCATCGTCGTTTCCCACGAGCTCCAGGCGT
CCAGCAGTGTCTTCGTGGCCGGGGATGCGGCCCATTTCCCTTGCACGGAC
CTGGGAAAGCGGGTGAACGTCCGCTCCGCCGACCACGCCTATCACTCCGG
GTGGGTGGCGGGGATGAACATGACGGGCCGAGGGGTCCGCTATcagcatc
tccctctcttctttggtGCGATCCCCCGTTTGGGCGTCCGAGCGGCTTGG
GTGGGGCAATGCGACGGCAGCGCCGAGACGCATGGGTTCtggtggaagga
aggcgggaaagccaACGGGAGCGGGGGCACCGGGATGGCGCGAAAACGGA
CACgcatgggggaggatgcgCCTCCGTCCACGTCAATctcggccgaggag
gaaaaagggctGTCGGAGAGGGTCAAGGGTGCCTTCCAAAGCCTCCTGGG
TGGCGAAAAGGACCCGAAGGGTGTGGTGGATAACACCAGTTCGGCCTTGG
CAGCCGTCGGGATCGGGACCACAGGGTGGGGTGGCGACAGTAACACGGGC
CGGAGAGTTGGTATCTACAGGCGGACGACCACGGACAGGGAGTTGGGGGA
TTTGgacgcggtggtggaggcggaaatggagagcgaggccttggccaggg
cggggggcgggaagaactTCACCCCGGTGAACGGGACTGGGATCGTCTTT
TTTGTGGACCCGGACGGGACGGTTCGTGGCATACTGGGGTGGGGgctccc
accaccttcgaCTGCAGGTGAGAAGGGGGACCAATCCGAGAGTGAGGTGC
CTTCACCGTCGTGGTCTCGGACCGGCGGGGTAGGGCAGATAGACAACGTC
TTGGGCGGCGTGATTGAGCGGGCCCGCACGGCGGTGGGGGATGGACTGCG
GTCGGGAACCACTTTCAAATATGACATGAACAGCCGTCAGGACACCGTGT
CGGCCTTGCGGGCGTTGGCGTTTGAGATCATAGGTCCCGAGGCATTGGAA
CAATTGGGGCCCAAAGCGCCCTTGTACACGTACAACAGCGCCAAGCTCTT
GTCAAACACAGCGGACGATACTTTGTTCCGCATAAATAATAACAGCAGAT
CCTCTGCTgatttgatggaggaggcctaCGAAGCCGCCGTCAAAGGCCAC
ATGCAGCCCACTCCGGGCACAAATACggtgccttttcccttcaaCCGTTC
GTAATTGACGGTAAATGAGTGAATAGAATCTGTCATGTGCATTCGACGAA
CAAGTGAAATCATGCACTAAATC

Coding sequence (CDS) from alignment at KK037251.1:212752..215474+

>rna9053 ID=rna9053|Name=rna9053|organism=Nannochloropsis gaditana|type=CDS|length=2529bp|location=Sequence derived from alignment at KK037251.1:212752..215474+ (Nannochloropsis gaditana)
ATGCTCCGCTGGCTGGTCCTTCTGCCCACAAGGACAAGACGAGCAGTCCC
ATGCCCACTCCGATCAGTACATCAAGGGATTGCATGTGCGGTagacgaag
gaagaagcCAATCAAACGTCCTCCTTTGCTGCTTGGCTTTGGCAGCCATC
TCCTCAGGAACGCTCTCGTCACAAAATGAAGCGGACTCCAAATCTCGGCC
GGAATCGCCCGCTTTCTCGGCCGAGTTTATAATACATGGGCGTCGACTTA
ACGTCCTTCTTAGCCCCTGGCTTTCTACCATTGCTGAGGATGGCCCCGCT
TCAACAAACATGGACGCAGCACAGCATCGTAGACGGGACCTGACGAGTTC
TTTGGCAACTCGACGAAGCGCCAAGTACGTCATCGTGGGTATGGGGGTCA
CGGGCTCTGCCGCTCTGCAGGCGCTCTTGGAATGTGAGCCGGATGCCGAT
ATCACTGTCGTAGAAAGAGGGACGCAATCGGCTGACTTTGAAGAGccgca
aggaggacgggacagggctcggaagaaagagaaaggcggaggtcTTGGGG
GCTTCTTGCGCCGAGGCCACCAGGGGAAACCTAGCGTCAAATACCTGTGG
GGCACGACCGTGAATTCGCTGGACGCAGACGGCAGGATCCTCTCACTCTC
GGACGGCTCCACACTGAGGTTTGAGAAATGTTTGCTGGCAGTGGGAGAGG
GCCCTGTGCGGGTGCCGCCCAGGTATGTGGAGAGGGATATCGCGGGGCGC
GTCACCCCCTTGCACAGAGCCGAGGACAGGCGGGTCTTGGGCCGGTCAGT
GGCCCAAGGGCACCACGTGACCGTGGTCGGCTCCAATTGGGCCAGCGTCG
AGCTGGCGAGCTTTTTGAGCGACGTGGGCCGGCGGCacggctgggggagg
agcagcgtcACCTTGGTCTTCCCGGAGTCCACTCCCCTGGCCAAGGAGCT
GCCTCGGTACCTGTCGGGTCTCCTGATGCGGCGCTTGGAGCGCCGGGGCG
TGGAGGTCATCCCCCACACCAGCGTCAAGTACATTGGAAGGGCCATGGCG
TACGAGGTGCAGGCACTCCGTCCGTCCCAGCCctggtctcctcccttcga
ccCCGAGGAAgacacgggggaggggcccaggCGTAAACCCACCGCCAACA
ACCGCCCtacagaggagcaggagcccATGGCCTCCTTTGACCCCATTCGG
GTCTACTTGACAAGCAAATTCGCGAGCCTGGATTCGactgccctcctcac
cgACCATGTGGTTGTCGGGGGCTCGTCGTCGCAGGGCCGGCTCCCCACCT
TCGATTTCGAGGGCCATCCTTTGGAGGCGGACGCTAAGACCGGCGCCATC
GTCGTTTCCCACGAGCTCCAGGCGTCCAGCAGTGTCTTCGTGGCCGGGGA
TGCGGCCCATTTCCCTTGCACGGACCTGGGAAAGCGGGTGAACGTCCGCT
CCGCCGACCACGCCTATCACTCCGGGTGGGTGGCGGGGATGAACATGACG
GGCCGAGGGGTCCGCTATcagcatctccctctcttctttggtGCGATCCC
CCGTTTGGGCGTCCGAGCGGCTTGGGTGGGGCAATGCGACGGCAGCGCCG
AGACGCATGGGTTCtggtggaaggaaggcgggaaagccaACGGGAGCGGG
GGCACCGGGATGGCGCGAAAACGGACACgcatgggggaggatgcgCCTCC
GTCCACGTCAATctcggccgaggaggaaaaagggctGTCGGAGAGGGTCA
AGGGTGCCTTCCAAAGCCTCCTGGGTGGCGAAAAGGACCCGAAGGGTGTG
GTGGATAACACCAGTTCGGCCTTGGCAGCCGTCGGGATCGGGACCACAGG
GTGGGGTGGCGACAGTAACACGGGCCGGAGAGTTGGTATCTACAGGCGGA
CGACCACGGACAGGGAGTTGGGGGATTTGgacgcggtggtggaggcggaa
atggagagcgaggccttggccagggcggggggcgggaagaactTCACCCC
GGTGAACGGGACTGGGATCGTCTTTTTTGTGGACCCGGACGGGACGGTTC
GTGGCATACTGGGGTGGGGgctcccaccaccttcgaCTGCAGGTGAGAAG
GGGGACCAATCCGAGAGTGAGGTGCCTTCACCGTCGTGGTCTCGGACCGG
CGGGGTAGGGCAGATAGACAACGTCTTGGGCGGCGTGATTGAGCGGGCCC
GCACGGCGGTGGGGGATGGACTGCGGTCGGGAACCACTTTCAAATATGAC
ATGAACAGCCGTCAGGACACCGTGTCGGCCTTGCGGGCGTTGGCGTTTGA
GATCATAGGTCCCGAGGCATTGGAACAATTGGGGCCCAAAGCGCCCTTGT
ACACGTACAACAGCGCCAAGCTCTTGTCAAACACAGCGGACGATACTTTG
TTCCGCATAAATAATAACAGCAGATCCTCTGCTgatttgatggaggaggc
ctaCGAAGCCGCCGTCAAAGGCCACATGCAGCCCACTCCGGGCACAAATA
CggtgccttttcccttcaaCCGTTCGTAA

Synonyms

Publications