rna9044, rna9044 (mRNA) Nannochloropsis gaditana

Overview
Namerna9044
Unique Namerna9044
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1769
Alignment locationKK037251.1:190621..191687 +

Link to JBrowse

Properties
Property NameValue
Productimmunoglobulin i-set domain protein
Orig transcript idgnl|cribi|Naga_100738g3.7408.mrna
Orig protein idgnl|cribi|Naga_100738g3.7408
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:190621..191687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100738g3gene8771Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9044rna9044-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21658.1cds9014Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9044 ID=rna9044|Name=rna9044|organism=Nannochloropsis gaditana|type=mRNA|length=1769bp
GCTTAGTCAACGTAATGGGCCTTTGATTTTTTGTCAGTCACAGGCTTCGC
GAAAATCCTTCTCACCGCTGCATATCATTCACCTTATCTCTACAATTCGC
ACTCTTGCATTTAGGGGGAAAAATCCACCATGAGCAAGAGTGAAAGAAAG
GCCGCTCGGATTCATCGTGCAGTGGCGGAAGGAGACGATTGTGTGGTAAT
TGATCTGACAAAACCCTGTTGCTTCAAGCTTGCTTCCATTGTGGAAGCGC
GTGACCCCATTACGGATGGGACACCCCTTTTGACGGCCGCCGAGAGGGGG
GACGTGGGCATTGGCAAGATCCTTCTCTCCAGAGGCGCCGATGTGCACGC
TGTCGACAGTGACATGCGCACTGCCATGCACGTGGCGTCCCTCCACAACC
ATGTCCCGTTCTTGGACCTACTCCTGGACCATGGGGCGAACGTGGATGCC
CCCAACCGGGAGGGGATGACGCCTCTGTTCCTTGCCATCCATTTGTACGG
ATCCCGAGATGATGTTCAGGGTAAGGGCGTGAAGGCGATTCGTTTCCTCC
TGAGCCAGGGGACCAACATCAAGATTTGCTCAGGGCCGGAGGAACACACC
CCCTTCTTGCGGGCGGTGGCGCTTGGGCACCAGGACATCGTGTCGCTGTT
TTTGACCTGTGGGAGGTCGGGGCGGGAGGAAGGGAAGGAGGAAGGGGTGG
TGGGCGTGGACCAGGACCGAGACGCGCACGGTCGGACTGGATTTATGCTG
GCCATCGCCCAGGGTTCCTTGGAAATGGCCGCTTTGCTCCTGCAGCACGG
GGCGGACATGGAGGCGAAGGACAAGGCGGGGATGACGGCCTTGGCATGGG
CCGTGGGTCGTCCGGAGAAGTTGACGCTGAAGTTTCTGCTCGACCGCGGC
GCCAATGTTCGGATCCAGGACACGGACTCAGGGGCCACGCCCTTGATGCT
GGCTGCCCAGAATGGGGACGTGGGGCTGGTCCAGCTGCTCGTGGAAGGGG
AGGCGGACTTGGAATCGAAGGACGGTCGGGGTTACACTGCCTTGATGCAC
GCGGCCGCCAAGGGGCATTCCCGTGTCGTCAGCTACCTGATGGACCAGAC
CGCCCTCCAGGACTCGCAAAAAGACCCCACCTCCGCGCCCGCACGCCGGA
ACCGGGGCAGGGGCTCGGATCCGGCCTCGGCCCGCGCCTCCGACCCTCCG
TCGCAATATGCCTCCCCGGAAGATGTGGCGGCCACAGAGGAGATCAAATC
CTTGGTCCGTCGCGCCAAAAATTGCGGGGCGCCGATCTTGCCCAGCGCCC
CCACAGTCCGGAAGGAGAAGCTCGATCCTTTGCACCCCTCCATTCTCCTG
GCCTTCGAGCCCCCACGTCCTACGGCTGCCTGCCCCAAGCTCGGCGTCTT
GAAGTACACCGCCGAGTGCTTTGCCTGGGAGGAGGCCAAAGGGGAGGAGG
GGGAGGCAGGGGGGGAGGCAACAAGAAGGGAGGCGGAGGATAGGGAAGGC
CCGGTGGCGGTGGTGGAGGGCGTGGGGCAGGGTCAGTCTCCCTTCGTCTT
CCGTGGTCTCGAGAGGGGCCGCTGGTATCTCTTCAAAGTCCACGCTCAGT
CCGAGGGAGGACGAGGGTTGTCGAGCCGCACCGATCCGATCTTCTTGGCC
ACCACGCCCCTCGGGGCCCCGGAGATGAAGGAGGCGGTGGTGGAGGCGGT
GGTGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AGGGGAGGAGGAGGAGGGG
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protein sequence of rna9044

>rna9044-protein ID=rna9044-protein|Name=rna9044|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
GGEGKVVPKVGGVIGEVDKEAGTKEEVEENEGAVTGNKEEEEEGRGREGG
REEDGSQGEVGGAVEDAVQKGKEEERGEGKEGTNSETDQAEATGKETGKE
EGGGECEGEGGGEGGRGADKKASMARKAKVLPTLRITVSAPADDGGQPIT
GYMLTAKPGNLKVESTEPILLLPGLTPGTSYSLSVAARNAAGYGPASRPM
VVDVMP
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mRNA from alignment at KK037251.1:190621..191687+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9044 ID=rna9044|Name=rna9044|organism=Nannochloropsis gaditana|type=mRNA|length=1067bp|location=Sequence derived from alignment at KK037251.1:190621..191687+ (Nannochloropsis gaditana)
ggaggggagggaaaagtggTGCCTAAGGTTGGTGGAGTGATAGGGGAAGT
CgacaaggaggcaggaacaaaggaggaggtggaggaaaacgaaGGCGCCG
TGACGGGGaataaggaggaggaggaggaggggaggggaagggagggagga
agggaggaggatggaagccagggcgaggtgggaggggcggtggaagacgc
CGTGcagaaaggcaaggaggaggagaggggggaagggaaggagggtacgA
ACAGTGAGACTGATCAAGCCGAGGCTACGGGCAAAGagacagggaaagag
gagggcgggggggagtgcgaaggggagggaggaggggagggcgggagagg
ggccgACAAGAAGGCCAGCATGGCCCGCAAGGCCAAGGTATTGCCGACCC
TACGCATCACTGTCAGCGCTCCCGCGGATGACGGCGGGCAGCCCATTACC
GGATACATGCTCACGGCCAAACCGGGGAATCTTAAGGTAGAGTCAACCGA
gccgatcctcctcctgccggGCTTGACCCCCGGCACCTCCTATAGCCTGA
GCGTGGCCGCCAGGAACGCAGCAGGGTACGGGCCTGCTTCCCGTCCCATG
GTGGTGGACGTGATGCCCTGATGAGGTCggaggatggggcgggagggagt
gcgggGTGTGGgctggcgggagggcgggggggagggcccgaaaggggaaa
gggagccaGCCGCTTGGGCAGCAGGACGGCGATGAGGACGGCAATGGGGA
GATTCTTTTTACGAACGTGCGTGATTGTATGTCTCAATTTTGATGAAAAC
TCATTTATTTAAAGTGTTAGATAAGAGTTAAGGGAACTGTATCGACAACC
GCAGTTTTATAAAATGCGAACACTCATGGCAGAGTAAGAGCGAGATAAGA
GTTGTATGGTAAAGACTATGAGAGACAGAGAGTGCAAAAGAGAAAGTGAG
AGTAAGAAAAGAGCGAGTGAagtttaaaaaaaaaaaaacagaaaAAATTG
ACGGCTCGAGATGCTGAGTCACATCAAGAATTATTTGTCGAATGAACATC
CATTAGGAAATGATTTT
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Coding sequence (CDS) from alignment at KK037251.1:190621..191687+

>rna9044 ID=rna9044|Name=rna9044|organism=Nannochloropsis gaditana|type=CDS|length=621bp|location=Sequence derived from alignment at KK037251.1:190621..191687+ (Nannochloropsis gaditana)
ggaggggagggaaaagtggTGCCTAAGGTTGGTGGAGTGATAGGGGAAGT
CgacaaggaggcaggaacaaaggaggaggtggaggaaaacgaaGGCGCCG
TGACGGGGaataaggaggaggaggaggaggggaggggaagggagggagga
agggaggaggatggaagccagggcgaggtgggaggggcggtggaagacgc
CGTGcagaaaggcaaggaggaggagaggggggaagggaaggagggtacgA
ACAGTGAGACTGATCAAGCCGAGGCTACGGGCAAAGagacagggaaagag
gagggcgggggggagtgcgaaggggagggaggaggggagggcgggagagg
ggccgACAAGAAGGCCAGCATGGCCCGCAAGGCCAAGGTATTGCCGACCC
TACGCATCACTGTCAGCGCTCCCGCGGATGACGGCGGGCAGCCCATTACC
GGATACATGCTCACGGCCAAACCGGGGAATCTTAAGGTAGAGTCAACCGA
gccgatcctcctcctgccggGCTTGACCCCCGGCACCTCCTATAGCCTGA
GCGTGGCCGCCAGGAACGCAGCAGGGTACGGGCCTGCTTCCCGTCCCATG
GTGGTGGACGTGATGCCCTGA
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Synonyms
Publications