rna9039, rna9039 (mRNA) Nannochloropsis gaditana

Overview
Namerna9039
Unique Namerna9039
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length885
Alignment locationKK037251.1:178790..180285 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100656g3.11.mrna
Orig protein idgnl|cribi|Naga_100656g3.11
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:178790..180285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100656g3gene8766Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21664.1cds9009Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9039rna9039-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9039 ID=rna9039|Name=rna9039|organism=Nannochloropsis gaditana|type=mRNA|length=885bp
GCACGGAGAGGGAATTCCTCGGGCATGTGTTATGGTAGGGGACGAAGCCT
GACGTTATCTTTCTACTCGGTTGGGATCCGTAGGTGCACGGAGGGTTTCT
TGTCTCCTCGCGATCTGAAAAGCAGGACGGGAACGGACGCCCACATCTTC
TGTTGCCCATGATCAACTTCCTTCTTTTGGTGAGTCGACAAGGGAAGACA
CGCCTCAGTAAATGGTATAAGCACTACACGACCAAGGAGAAGGCACGTGC
GATCAGGGAATTGACAAATCTGGTTTTGGCCAGGGCGCCTAAAATGTGTA
ACTTCATCGAGTGGAGGGATAAGAAGGTGATATACAAACGATATGCCTCG
CTTTTTTTTATCGCAGCCGTGGACAGCTCGGACAACGAGCTTATCACCCT
GGAGATGATCCATTTGTTTGTGGAGATTTTGGACCGGTATTTTGGAAATG
TCTGCGAGCTGGACATTATTTTCAACTTTCACAAGGCTTACTACATCCTG
GACGAGCTTTTCATCGGGGGTCATTTGCAAGAGAGCAGCAAGAACGAGGT
TTTGCGGGTATGCTCTCAGATGGACGAGCTGATGGAAGAGCAAAAAGACG
ACAATCTTGCCGCCATGGTGGCGCAAATGTCGCGTAGCAGATAGACGAGG
AGCTTCGCGTTGTGGAGTGAAAAGAAATGATCGACAGAGAGGTTTTCTGT
CGGCGCATCTTCCCTGTCGTGAGTGCACACCACGCATTGTAAACAAAAGT
AATCCGGAAGAGAACAAAATCCTTCCTTCTCGCACGAACACGTGAAATTT
TCTTTTCTCCTGAGACACAACGTAAATCTCGATGCCTCGAACATTGATTA
ATAAATAAAGTGAAAGAAAGGAAAAAAACGACGCC
back to top

protein sequence of rna9039

>rna9039-protein ID=rna9039-protein|Name=rna9039|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
ATPRAPQRATLPTMVETTRRLPPSALGPYPTSKLSTPRLVKAGTNSRTTG
RTTINSGRTTISSGRTTINNGTDRTTINSGRTTTSSGQIRTTINSGKTIN
NGRTTINSGRTKTTISNGRTTINSGRTTINNGRTINNGRTTTSSGQTRTT
INSGKTINNGRTTINSGRTTINNGTNNSKTTAREGSNSSGGASSSSKTTV
SHRHKSTMRSSHRGGRRIRAREPGKPGGHKRSGTSNSRPRDKEGGKREQS
RETRIHQPPQIRRRYRCKLPRRRPKPQPPQGRHAGPSGAIVCYGNRRPGC
GHRAGEATVGRERRKEERHGDGRDVKNALSVGS
back to top

mRNA from alignment at KK037251.1:178790..180285-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9039 ID=rna9039|Name=rna9039|organism=Nannochloropsis gaditana|type=mRNA|length=1496bp|location=Sequence derived from alignment at KK037251.1:178790..180285- (Nannochloropsis gaditana)
GCCACGCCCCGCGCCCCGCAGAGGGCTACTTTACCAACAATGGTCGAGAC
GACAAGGAGGCTGCCGCCCTCGGCATTGGGCCCATACCCGACGAGCAAGT
TGTCAACCCCACGCCTGGTCAAGGCTGGAACCAACAGCAGAACAACGGGC
AGAACAACAATCAACAGTGGCAGAACAACAATCAGCAGTGGCAGAACAAC
AATCAACAATGGAACGGACAGAACAACAATCAACAGTGGCAGAACAACAA
CCAGCAGTGGGCAAATCAGAACAACAATCAACAGTGGCAAAACAATCAAC
AATGGCAGAACAACAATCAACAGTGGGCGAACCAAAACAACAATCAGCAA
TGGCAGAACAACAATCAACAGTGGCAGAACAACAATCAACAATGGCAGAA
CAATCAACAATGGCAGAACAACAACCAGCAGTGGGCAAACCAGAACAACA
ATCAACAGTGGCAAAACAATCAACAATGGCAGAACAACAATCAACAGTGG
CAGAACAACAATCAACAATGGAACCAACAACAGCAAAACAACGGCCAGGG
AGGGCAGCAACAGCAGTGGTGGAGCCAGCAGCAGCAGCAAAACAACGGTC
AGCCACAGGCACAAGTCAACAATGCGCAGCAGCCACAGGGGGGGGCGGAG
GATACGGGCCAGGGAGCCGGGCAAACCTGGGGGGCACAAGCGCAGTGGGA
CCAGCAACAGCCGGCCAAGGGACAAGGAGGGGGGCAAAAGGGAGCAGAGC
AGGGAAACCAGGATCCACCAGCCCCCGCAGATCCGCCGGCGGTACCGGTG
CAAGCTGCCACGCCGCAGGCCCAAGCCGCAGCCGCCCCAGGGGAGGCACG
CTGGACCCAGTGGGGCGATCGTCTGTTATGGCAACCGACGCCCCGGTTGC
GGCCACAGGGCGGGTGAGGCAACAGTCGGGAGGGAAAGAAGGAAGGAGGA
GAGGCACGGCGATGGTCGTGATGTGAAGAACGCGCTGTCTGTGGGAAGCT
AGAGGTGCACATAGGGACAAGGGGGACCATGTCTTCTTGTGTACCCCCTC
CATGACCCAGTGATGGAGACTGAATGGTTCTTGAAATAAAGAGGAGAGAG
GAAAGGGAGGGCAATGGTGAAAGAGAGAGATCTGTGTGGGAAAGATAAAA
CCCGATGGGGGGCTGGCCAAAGCGACATTGCGGAAGTGACGTGTTGGGAG
ATTGGTAAGGCGGAATGCAAGATGGACTGAATTCAGGGAGGTGTCAAGCA
AGTATGTATTCATCCTTTCCAATCAAAGCAGCTCATAGAGATGTGGTTCG
ACGTGACGATGCCCCTCCAGGCCGGAGGAAAGTTTCGCCCATACAGCATA
AGGCCACGCGTCGCAGTGCTGAGGAGCTCGAAGGCGGGCATGTTTAATAG
TGTGAAGGATTTTCTCTGCAAACTTTAAGCGAACAAGTTCATTCATTGGA
CGAAGAGAATCTAAAGAATCTGATATAGTTCATCGTGTGTTGCCAT
back to top

Coding sequence (CDS) from alignment at KK037251.1:178790..180285-

>rna9039 ID=rna9039|Name=rna9039|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at KK037251.1:178790..180285- (Nannochloropsis gaditana)
GCCACGCCCCGCGCCCCGCAGAGGGCTACTTTACCAACAATGGTCGAGAC
GACAAGGAGGCTGCCGCCCTCGGCATTGGGCCCATACCCGACGAGCAAGT
TGTCAACCCCACGCCTGGTCAAGGCTGGAACCAACAGCAGAACAACGGGC
AGAACAACAATCAACAGTGGCAGAACAACAATCAGCAGTGGCAGAACAAC
AATCAACAATGGAACGGACAGAACAACAATCAACAGTGGCAGAACAACAA
CCAGCAGTGGGCAAATCAGAACAACAATCAACAGTGGCAAAACAATCAAC
AATGGCAGAACAACAATCAACAGTGGGCGAACCAAAACAACAATCAGCAA
TGGCAGAACAACAATCAACAGTGGCAGAACAACAATCAACAATGGCAGAA
CAATCAACAATGGCAGAACAACAACCAGCAGTGGGCAAACCAGAACAACA
ATCAACAGTGGCAAAACAATCAACAATGGCAGAACAACAATCAACAGTGG
CAGAACAACAATCAACAATGGAACCAACAACAGCAAAACAACGGCCAGGG
AGGGCAGCAACAGCAGTGGTGGAGCCAGCAGCAGCAGCAAAACAACGGTC
AGCCACAGGCACAAGTCAACAATGCGCAGCAGCCACAGGGGGGGGCGGAG
GATACGGGCCAGGGAGCCGGGCAAACCTGGGGGGCACAAGCGCAGTGGGA
CCAGCAACAGCCGGCCAAGGGACAAGGAGGGGGGCAAAAGGGAGCAGAGC
AGGGAAACCAGGATCCACCAGCCCCCGCAGATCCGCCGGCGGTACCGGTG
CAAGCTGCCACGCCGCAGGCCCAAGCCGCAGCCGCCCCAGGGGAGGCACG
CTGGACCCAGTGGGGCGATCGTCTGTTATGGCAACCGACGCCCCGGTTGC
GGCCACAGGGCGGGTGAGGCAACAGTCGGGAGGGAAAGAAGGAAGGAGGA
GAGGCACGGCGATGGTCGTGATGTGAAGAACGCGCTGTCTGTGGGAAGCT
AG
back to top
Synonyms
Publications