rna9035, rna9035 (mRNA) Nannochloropsis gaditana

Overview
Namerna9035
Unique Namerna9035
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1161
Alignment locationKK037251.1:163531..165724 +

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Properties
Property NameValue
Productcarboxyl-terminal protease
Orig transcript idgnl|cribi|Naga_100611g3.5797.mrna
Orig protein idgnl|cribi|Naga_100611g3.5797
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:163531..165724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100611g3gene8761Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9035rna9035-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21667.1cds9005Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9035 ID=rna9035|Name=rna9035|organism=Nannochloropsis gaditana|type=mRNA|length=1161bp
GGCGTGACGGCGTGTTGTTGGTGTGGCCGTGTCCATGTACTTATGAATTG
CGGCGGTCGTCGGATAGGACAGTTGGAATGCCCGCATGTCCGAGTCGGAG
CGTGTGCCCGAGTCTCCTCCGTCACATGCTTGCGTACAAAACCCGCCAAT
CCTCCCCAATGCCTCCTTTCCCGCCAACCTACAGTATTTCCACCGTCCGG
CCTCTATACACCAGGGAATCATGCCCAAGCGGAGAATTGTTGCCGTCCTT
CGACCCCTCCCTCCTGTCGCCAGCGTGTTCGTCATTGGCCCCCTCCACAT
CCTTCTCCTCCTCCTTTGCCTCGGCTTTCCGGCCTCTACCGCCTTCCACC
TCCACCCTCCGCCGTCCTTGTTGCCGTCCAGCCCTTCGTCCGCCATGCAC
CTGCCACGTGCGCCGTCTTCACGGTCTTACCACCCCTGCCCGGGCGGAGG
CGGGAGGCCACAGACCTTGAAGCTCGCTAGTCCCGGGGACGCTGACGACC
CGTCGCCCCCGTCGTTCCCGAAATTGTTAAGAGACATGTTCGGTCGTCAG
AACCGCGTCACGGCTAAACGTGCCCCGGCTTCTAGCACCCGCCCTCCCTC
CTCATCACGGCCCCTGAAAGTCCAACCTCCCGCCAAGAAAGCCTTCCCCT
GGCCCCCTGCTTCCTCCCGCTCCTCCTCTTCCTCTTCCTCCTCCTCCTCA
TCTCCCCGCCCCCAAACCCTGCCGCGCAACACGGAAGCTGGCCCTACCTC
CTCAAAGAGCACGGGCTTCCAGGCACCGCTGGGCAACCTACGGCCGTTCG
TTTCGGACCTGACGCGTCGTCTTCAGACCCCGGTCTCCCTCGGGCCCGCC
CTCACCAAGCTTGCCTTCCTGTCCGTGGGGTTCCTGGGCGGGGGAGCGAG
CGGGCTCCTCCTCCTCCTTTCCCCCTCCTCCCCCCTTACTTCCCTCCCGC
CCTCCCTCCTCCAGCCCGTCACCCTCTTCGAGAACATTCTCCTCGAGATC
GACCGGGGCTATGTGGAGGAGGTGGACGACCAGAAGCTCTTTGAGTCCGC
GGTCGAGTCCATGCTCTCCAGTCTGGACCCGTACACTGAATTTGAGGGGG
AGCAACTCGCGCAGGACATGCGGGAGGTAGGGGGGGAGGGCCGGGGGGAG
GGCGGGAGGGA
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protein sequence of rna9035

>rna9035-protein ID=rna9035-protein|Name=rna9035|organism=Nannochloropsis gaditana|type=polypeptide|length=404bp
PPSFLPRNPSLLPVSEGRNSSLPPSLSPLLPPYPTGRCIQSVRYSSPPPA
GGGVMLGTEEDGAGKTKDSLQKRRIGLGREKGYLANDIPESERQTFYTTH
GRVVRDGGGVEADLKVAAPQASVLEVSLQQQGVFFDFANEWSSKHTYTPG
AGVQEGRPLVTDATYQEFVDYVGRKEKEGSVRYDVLFNGALEPLRTALDA
TEYKKAGKGLDALKAAVREEVSREFNTHKAQIKEEVEQAILARYQPESLL
RRLALEGDPQVKVAVEAVKEGGREGKGKEGRYWQVLQGPRREGGTGQQAV
GGKERGREDNGKGKVARGGKEGGREENGRGKVAWYGGREKEGVSREGRAG
AGGDTGKEERSEPVAPNVPVDRPGTVTPPHFRRTSAPPSSPASRVPSGVA
RAWS
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mRNA from alignment at KK037251.1:163531..165724+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9035 ID=rna9035|Name=rna9035|organism=Nannochloropsis gaditana|type=mRNA|length=2194bp|location=Sequence derived from alignment at KK037251.1:163531..165724+ (Nannochloropsis gaditana)
cctccctccttccttccgcgcaatccgtccctccttcccgtctcaGAGGG
ACGtaattcttccctccctccctccctgtctccccttctccccccctacc
caACAGGGCGATGCATCCAAAGTGTCCGGtactcctctcccccccccgcg
ggaggcggggtcATGCTTGGGACTGAGGAAGACGgcgcggggaagacgaa
ggacaGCCTCCAGAAACGTCGCATCGGCCTTGGCCGGGAGAAAGGCTACC
TGGCCAACGATATCCCCGAGAGCGAACGGCAAACTTTCTACACGACACAC
GGGCGGGTGGTGCGGGATGGgggtggggtggaggcggaccTGAAAGTGGC
TGCACCGCAAGCGTCGGTCCTGGAAGTCTCCTTGCAACAACAGGGTGTGT
TTTTTGATTTTGCCAATGAGTGGTCCAGTAAACACACGTATACACCCGGG
GCGGGGGTTCAGGAAGGAAGGCCTTTGGTCACGGATGCCACGTACCAGGA
ATTCGTCGACTATGTGGgacgaaaggaaaaagaaggaagcgtCCGTTACG
ACGTGCTTTTTAACGGTGCCCTGGAACCGTTACGGACGGCGTTGGACGCG
ACCGAGTACaaaaaggcgggaaagggacTGGACGCCTTGAAAGCAGCGGT
GCGTGAGGAAGTGAGCCGAGAATTCAATACCCACAAAGCGCAGATCAAGG
AGGAAGTAGAGCAAGCCATCCTGGCCCGCTACCAACCGGAAAGCCTGCTG
CGACGCCTGGCGCTGGAGGGCGACCCTCAGGtgaaggtggcggtggaggc
ggtgaaggagggagggcgggagggcaaggggaaggaaggtaggTACTGGC
AGGTGTTACAGGGCCcgagacgggagggagggacggggcagcaggcggtg
ggagggaaggagagagggagggaggacaacgggaaagggaaagtggctag
gggagggaaggagggagggagggaggagaacgggagagggaaagtggCTT
GGtacggaggacgggagaaggagggcgtttccagagagggaagggccggg
gcagggggggatacagggaaggaagaaaggtcGGAGCCCGTAGCACCAAA
CGTGCCGGTGGATCGACCCGGGACGGTAACCCCCCCTCATTTCCGCCGga
cctccgccccgccctcctccccggcctcgcgCGTGCCGTCGGGGGTGGCG
CGGGCGTggtcgtgaaggagggaaggaggaagggagggagggaggaaggg
cttcTGTACATAGAATTGAGGAATGGTAGCGTGATTGGAGGGAGACCCCC
ATTGAATCATAGCGATGTTTgatagggaggaaagggtggaagagggggga
cgcAGGATCGCAGGAAGAGCTCAAGAGCAGATCAGGACACGAGGGAgtac
agggagggagggaggacggcttggTCTGTACATGGATAAggcagggaatg
gagggcgagggagggagagaggggctgGGGGCAGAAGGCGGCAGATGTGG
CTGGTCGTGAGATATACAGAAGGAAAGGTGGATTGGCGCGTGTGGCAGCG
CATCATGCCGAAGGAGGTCACGCCCGGCCGGGACTCAAGTAAGAACGAAA
AGAGCAGACGAAAAAGAGCGCTGAGAGCCACCGTTTTGCCCGTCCCTGAC
AGCAGCATCTCTCGTCCCCGGGGGGGCAAGTCCTGACAGCCATGCTCGGC
CGGAATCTGAATGTTTTTTTCCTGACTTTTCCTTgggagcctcctccccg
tccctaaCCAACACAGCACACCCCGGCGTCCGGAcaacccctcctccctt
gaaTGGCGTCGCCTGCGCACAAagggctcctccctctccacgtgAGACCg
cgccacttcctcgtcccctcgcTCAGGAACATGCCGGCTTGCGCATGGCT
TAGTACCTGGCGTggatgggatggaggtgCCACAATTGCCATGAGCCAAC
CATTCCTTCAAGGGGAAAGCGAACAcaagcctcccctcctcttgaagtcc
ctccacggccaaccccccctctctgccaGACCCCCCCTCCTATCGCTCCC
GCGCCACGCCTCGACAAggtcccgccctttcccttcccacccaccccacc
ccccatcacctccccacgtccctcccagcccctgccCGTGCTTACCCGTC
CCCGCCAAACATGTTCCCTGCTCCCAggtcggcttcctcctcct
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Coding sequence (CDS) from alignment at KK037251.1:163531..165724+

>rna9035 ID=rna9035|Name=rna9035|organism=Nannochloropsis gaditana|type=CDS|length=1215bp|location=Sequence derived from alignment at KK037251.1:163531..165724+ (Nannochloropsis gaditana)
cctccctccttccttccgcgcaatccgtccctccttcccgtctcaGAGGG
ACGtaattcttccctccctccctccctgtctccccttctccccccctacc
caACAGGGCGATGCATCCAAAGTGTCCGGtactcctctcccccccccgcg
ggaggcggggtcATGCTTGGGACTGAGGAAGACGgcgcggggaagacgaa
ggacaGCCTCCAGAAACGTCGCATCGGCCTTGGCCGGGAGAAAGGCTACC
TGGCCAACGATATCCCCGAGAGCGAACGGCAAACTTTCTACACGACACAC
GGGCGGGTGGTGCGGGATGGgggtggggtggaggcggaccTGAAAGTGGC
TGCACCGCAAGCGTCGGTCCTGGAAGTCTCCTTGCAACAACAGGGTGTGT
TTTTTGATTTTGCCAATGAGTGGTCCAGTAAACACACGTATACACCCGGG
GCGGGGGTTCAGGAAGGAAGGCCTTTGGTCACGGATGCCACGTACCAGGA
ATTCGTCGACTATGTGGgacgaaaggaaaaagaaggaagcgtCCGTTACG
ACGTGCTTTTTAACGGTGCCCTGGAACCGTTACGGACGGCGTTGGACGCG
ACCGAGTACaaaaaggcgggaaagggacTGGACGCCTTGAAAGCAGCGGT
GCGTGAGGAAGTGAGCCGAGAATTCAATACCCACAAAGCGCAGATCAAGG
AGGAAGTAGAGCAAGCCATCCTGGCCCGCTACCAACCGGAAAGCCTGCTG
CGACGCCTGGCGCTGGAGGGCGACCCTCAGGtgaaggtggcggtggaggc
ggtgaaggagggagggcgggagggcaaggggaaggaaggtaggTACTGGC
AGGTGTTACAGGGCCcgagacgggagggagggacggggcagcaggcggtg
ggagggaaggagagagggagggaggacaacgggaaagggaaagtggctag
gggagggaaggagggagggagggaggagaacgggagagggaaagtggCTT
GGtacggaggacgggagaaggagggcgtttccagagagggaagggccggg
gcagggggggatacagggaaggaagaaaggtcGGAGCCCGTAGCACCAAA
CGTGCCGGTGGATCGACCCGGGACGGTAACCCCCCCTCATTTCCGCCGga
cctccgccccgccctcctccccggcctcgcgCGTGCCGTCGGGGGTGGCG
CGGGCGTggtcgtga
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Synonyms
Publications