rna9017, rna9017 (mRNA) Nannochloropsis gaditana

Overview
Namerna9017
Unique Namerna9017
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length462
Alignment locationKK037251.1:115115..116278 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101423g1.9347.mrna
Orig protein idgnl|cribi|Naga_101423g1.9347
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:115115..116278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101423g1gene8743Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9017rna9017-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21686.1cds8987Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9017 ID=rna9017|Name=rna9017|organism=Nannochloropsis gaditana|type=mRNA|length=462bp
ATGCTCTACTACAACCAAAAATACCCGGAGGCCCTTGAGCAGTTGGACCG
GGCCATCGACCGCTACGAGACTCTCTACGAGCAAGTAGCCACCGAAGAGC
GGGTTTGGCGCGCGGCCGTTCTCAGCCGGTACCACGGGCGGGAAACGGGC
TTGGCGAAGATCCGATCTTCTCCCCCTTCCCCCTATGGAACAGAGACGCG
TCGACTCATGGGCGCGGTCCTCGACCTTTTTGAGGGGAGAGTGGAGGAGG
AGGAGGTGCTGGCGATGGTGGAGGAGGCACGGTCGAACCCCTACGGGAAC
TACGACCTCTACGGTTTCTTCTACATCGGTCTCTATCGGGACGCCTGTGG
ACTGGCGGGACCGGCCCGGGCGGCGATGGAGCAAGCTACCAGGGCCCTCC
GCGCCCGCCAGGATGACGTCATGTACCATTTCCCTCGCTTGCATCTGCTC
TGGAGAACGTAA
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protein sequence of rna9017

>rna9017-protein ID=rna9017-protein|Name=rna9017|organism=Nannochloropsis gaditana|type=polypeptide|length=195bp
MTLPCFSRAHSTEESTSPSSRFASFPSSGITDTCLTIPSTTGIGMASQGL
GGLGLRSRRRPRRPHPRRFIEPSLSSLPLLLLLTFFSIAPAQAGLLHRVG
LAQINAKNPSGVSESTRSLKACNVTPSSPSFTSSFPFLPIPPVFLLAIPL
PRKFARDCQHQGHAACASVKVFIQSFRSPSAAVDECGGRRDGQVM
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mRNA from alignment at KK037251.1:115115..116278+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9017 ID=rna9017|Name=rna9017|organism=Nannochloropsis gaditana|type=mRNA|length=1164bp|location=Sequence derived from alignment at KK037251.1:115115..116278+ (Nannochloropsis gaditana)
ATGACCCTCCCGTGCTTTTCGCGCGCCCACTCGACTGAGGAGAGCACAAG
TCCATCCTCCCGCTTCGcgtcatttccctcctcaggaATCACCGACACTT
GCCTTACAATACCAAGCACCACCGGAATAGGAATGGCTAGCCAGGGGCTC
GGTGGATTGGGCTTGCGTTCCCGCCGACGGCCACGTCGCCCCCATCCCCG
TCGCTTCATCgagccctcgctctcttccctccccctcctcctcctcctca
cctttttTTCCATTGCCCCTGCCCAAGCCGGCCTCTTACACCGTGTCGGC
CTTGCACAGATCAACGCCAAGAACCCCAGCGGCGTCTCTGAGAGTACCCG
CAGCCTTAAGGCTTGCAAcgtcaccccctcctctccctccttcacctcct
ccttccctttcttacccatcccccccgtcttccttttggccatccccctc
ccacggaaGTTTGCCCGCGATTGTCAGCACCAGGGACACGCGGCCTGTGC
CTCGGTCAAGGTTTTTATCCAGgtgaggaatgggaggcgtcggggtaggg
ggcaagaagaagaggagggcaagcgTCGTGTATGTATTGCccagaggaga
gaggagggagggaatccatgtggaaagaaaggaagccGGAGACGAGCCCT
ACAAACTCCTTGCTCTGGCGAATGGGATCGGACCCTTTGGCCCTCATGGG
CCgtgtcttcgtcctcctccgtctcctcctccctccttcccatccaatcc
cccgctcccctcccacctgatAGGGTTAGGGTTCAGTTCGAACCCTGACT
AACACAaaccccctcccatcctccgcttccgccttcctgctgccctctcc
tcttgtctcctcatcctcattaACCTCATATttgcctcctttcttttctc
aaCCCTCCTTCCGTACCCCGTAGTCTTTTCGGAGTCCGAGCGCCGCCGTT
GAtgaatgtggagggaggaggttaggAGAAAGCTGCCCAGCGAAGCTGGT
GCGGCCAGTgctgaggaggatggaggaaggacaacGGGCATGGCAGAGAT
ggcaggagggcgtgagggagggtgtGAGGGAAGGgttgggggaaggggtg
cgGGCAGTGGTGGGTgaggtggagggatggaaagaggggtTGCAGAGATG
GGCAGGTCATGTGA
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Coding sequence (CDS) from alignment at KK037251.1:115115..116278+

>rna9017 ID=rna9017|Name=rna9017|organism=Nannochloropsis gaditana|type=CDS|length=1764bp|location=Sequence derived from alignment at KK037251.1:115115..116278+ (Nannochloropsis gaditana)
ATGACCCTCCCGTGCTTTTCGCGCGCCCACTCGACTGAGGAGAGCACAAG
TCCATCCTCCCGCTTCGcgtcatttccctcctcaggaATCACCGACACTT
GCCTTACAATACCAAGCACCACCGGAATAGGAATGGCTAGCCAGGGGCTC
GGTGGATTGGGCTTGCGTTCCCGCCGACGGCCACGTCGCCCCCATCCCCG
TCGCTTCATCgagccctcgctctcttccctccccctcctcctcctcctca
cctttttTTCCATTGCCCCTGCCCAAGCCGGCCTCTTACACCGTGTCGGC
CTTGCACAGATCAACGCCAAGAACCCCAGCGGCGTCTCTGAGAGTACCCG
CAGCCTTAAGGCTTGCAAcgtcaccccctcctctccctccttcacctcct
ccttccctttcttacccatcccccccgtcttccttttggccatccccctc
ccacggaaGTTTGCCCGCGATTGTCAGCACCAGGGACACGCGGCCTGTGC
CTCGGTCAAGGTTTTTATCCAGTCTTTTCGGAGTCCGAGCGCCGCCGTTG
AtgaatgtggagggaggagAGATGGGCAGGTCATGTGAATGACCCTCCCG
TGCTTTTCGCGCGCCCACTCGACTGAGGAGAGCACAAGTCCATCCTCCCG
CTTCGcgtcatttccctcctcaggaATCACCGACACTTGCCTTACAATAC
CAAGCACCACCGGAATAGGAATGGCTAGCCAGGGGCTCGGTGGATTGGGC
TTGCGTTCCCGCCGACGGCCACGTCGCCCCCATCCCCGTCGCTTCATCga
gccctcgctctcttccctccccctcctcctcctcctcacctttttTTCCA
TTGCCCCTGCCCAAGCCGGCCTCTTACACCGTGTCGGCCTTGCACAGATC
AACGCCAAGAACCCCAGCGGCGTCTCTGAGAGTACCCGCAGCCTTAAGGC
TTGCAAcgtcaccccctcctctccctccttcacctcctccttccctttct
tacccatcccccccgtcttccttttggccatccccctcccacggaaGTTT
GCCCGCGATTGTCAGCACCAGGGACACGCGGCCTGTGCCTCGGTCAAGGT
TTTTATCCAGTCTTTTCGGAGTCCGAGCGCCGCCGTTGAtgaatgtggag
ggaggagAGATGGGCAGGTCATGTGAATGACCCTCCCGTGCTTTTCGCGC
GCCCACTCGACTGAGGAGAGCACAAGTCCATCCTCCCGCTTCGcgtcatt
tccctcctcaggaATCACCGACACTTGCCTTACAATACCAAGCACCACCG
GAATAGGAATGGCTAGCCAGGGGCTCGGTGGATTGGGCTTGCGTTCCCGC
CGACGGCCACGTCGCCCCCATCCCCGTCGCTTCATCgagccctcgctctc
ttccctccccctcctcctcctcctcacctttttTTCCATTGCCCCTGCCC
AAGCCGGCCTCTTACACCGTGTCGGCCTTGCACAGATCAACGCCAAGAAC
CCCAGCGGCGTCTCTGAGAGTACCCGCAGCCTTAAGGCTTGCAAcgtcac
cccctcctctccctccttcacctcctccttccctttcttacccatccccc
ccgtcttccttttggccatccccctcccacggaaGTTTGCCCGCGATTGT
CAGCACCAGGGACACGCGGCCTGTGCCTCGGTCAAGGTTTTTATCCAGTC
TTTTCGGAGTCCGAGCGCCGCCGTTGAtgaatgtggagggaggagAGATG
GGCAGGTCATGTGA
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Synonyms
Publications