rna9010, rna9010 (mRNA) Nannochloropsis gaditana

Overview
Namerna9010
Unique Namerna9010
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1624
Alignment locationKK037251.1:101143..102196 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102003g1.10251.mrna
Orig protein idgnl|cribi|Naga_102003g1.10251
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:101143..102196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102003g1gene8736Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21693.1cds8980Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9010rna9010-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9010 ID=rna9010|Name=rna9010|organism=Nannochloropsis gaditana|type=mRNA|length=1624bp
ACGTTTTTGCTCAGACCCCTTCCCGTGTGTGTGTTGCGTAGCTTGCGCAC
CGCATGGGCATGGCAATGTTGTCGGCTGTGGCCTTGTGGTATCACGACGG
GATTTTGGAGCCGTTCAGACCGGCCTATGTTTTTGCATCTTCCCTCCTGT
AAAGTGAACGGATCTCCCATCCTCCCGGCGCGGGGATCAAAAACCGCAGA
TGCACGTGCATGCCACTTTGTTGGCGCTTCCCTTAATGAGTTGGAGGTCT
TTTCTTCGCATGGTGGAGGTCGTGGTGGATGTTTGTGCCGGGAGGAGATT
TTATTTCCACCCTTGAATATTTTTTGCGGCCATCCGTAGTCAAATTATCG
CCATGGACGATGCTCCCAGATCTAGATGCATGCGTTTTATTCGAGCCATC
CAAATGCAAGCCAAATGGTGGGATGGTCGAGTCCAGTGGCTTGCGGGAAT
TTTTCCATCCTTTCTATGAAACAATCGAGAGCTTTATGATTCTCGTGCAC
ACATTGCTGCGACATATTTCATGGGGTTGACGTGTCAGCGCCCTCCGACC
CAATCTATATGTTGTCCTTCTTCCCTGCTAAACACATGTGTATGCGACAC
TCGCTCAAACCTCCATTTTCGCACAGCCACTAAAAGAAGTGCAGGCACAA
TGGGAGAGTCATCTTCCAGTGGTTATATAGGCACAGGCCTGAGGGACTTA
CGGCCGTTGGAGTCACCTCTAAAAGTAATCCCTTATCGCCATGTCCTTCC
CACAAGCCCGCACACGTCCCACTCTCCTCCTCCCTCCGACGATGCCATCC
CCGTCGTCGAGCGCCAAAGACAGAAAGCCTCCCCTCTTTTGAAGGCCTTG
GCCGGAAGTATGGGAGGTTTGGTCGAAGCGATTGCCCTTCAGCCGGTCGA
CACGATCAAAACCAGGATGCAAATCCTCCCGACGTCGTATCCATCCATGA
TCAAAACCGCCCAAAAAATCGCCTCGGAGGAGTCGGTGCCGGCATTGTGG
AAAGGTTTGACACCATTTGCCACCCATTTGTTTAGCAAATATGCCTTGCG
GTTCGGGACTAATGCCGCTTTTCAATCCATACTGACGGATAGCGAGACTG
GGAAACTGTCCTCCTCTCGGCGCCTGTTGGCGGGGCTGGGGGCGGGCGTT
ACAGAAGCCATCCTCATCGTCACGCCCTTTGACGTGGTCAAAGTCCGCCT
CCAAGCCCAACACGGCATGGACAAGGCAAACCTCAAGTACCAGGGTCCCC
TGGACGCCGCTCGGAAGATCATAAGTCAGGAAGGGGTGGGGGCGCTATGG
TCGGGGGTCACGCCCACCATCTACCGAAACGGAATCCAGCAGGCCACCAT
GTTCTTTTTGAAGACGTGGATCGACGACAACGTTCTTGGCGTGCGGAAGA
GCTTGACCAAGGACGGGCAGGAAACGCGGCAGCCCCAGGTCTGGCAGTCG
ATGGCCTCGGGCTTTATGGCGTCTTGCCCCGGCCTGGTGATGACGAATCC
GCTCGACATTGTTAAGGTAAGGGCAAGTGGGATAAGATCGAGCAAGACAG
CGACGCAGGAGAGGGGGAAAGGCTGGGAAGCCCACCGCGGGGCGTGCACT
TGATGATCTATCCTCCCTCCCTCC
back to top

protein sequence of rna9010

>rna9010-protein ID=rna9010-protein|Name=rna9010|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MLPSPSPRGGYKWLHAGSARIFWECSLFCFFLADRENTNGCGPAFLPLES
TINNSYRQKNTHPIALDYCKVGAGVERRGLPSLHPIFPRISPPHFYFSRI
NIPFRPHPSAASRSPPSPLPLLPFLPPPSSPSWSCTKDAAKPVLRPSRGP
PSPCASSTRRNPRFLRASRAIFPSL
back to top

mRNA from alignment at KK037251.1:101143..102196-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9010 ID=rna9010|Name=rna9010|organism=Nannochloropsis gaditana|type=mRNA|length=1054bp|location=Sequence derived from alignment at KK037251.1:101143..102196- (Nannochloropsis gaditana)
GCCCTCCCCCCCTTCCTCAACGTCCCCTCCAGCTTCTTTGCGTCCCTCCC
TTCCCTCCTCCTTGCCTCCGTCGGTGCGTTCTGTCGAAGGAGGAGGCTAA
CGACGAGAGAAATACGGACAGGAAAAAGACAGGGCCTGGAAAGAGAACGA
GGTGCTGCAAAGTATTGTGCGAGATATTCTTGTTGTACAGTGGTCAGGTG
AAGGTAGGAGAAGCTGCGTGCTTCATGAGTGATTTGGGAGTAGGCCAGTA
GGAAGGGGAAGGGAGGGGAAAAGAAAGGAAGGAGGAAGGACGCACAGGTG
GCGATCAACGTGTGTACGGTAGGAGGAGATGTGCTCCAGGACATATGCTT
TGACATGTAAAACTTCTCATTTAAGCAGTCAAAAGAAATCCACACGCACG
ACGCCATGCTGTCCTGGATCTCGGCGGGCGCAAGCACGGGACCATGGCAC
GTCCTGTTCAAGGGAAGCAGGCAGGGTACCCACGTCCCCATTTTCCGCCA
CGCAATCATGACATGAATCCTTTCAAATGCTACCGTCGCCTTCCCCTCGG
GGAGGATATAAATGGCTCCACGCTGGGTCCGCTCGCATATTCTGGGAGTG
CTCTTTGTTTTGCTTCTTTTTGGCGGACAGAGAAAACACCAATGGCTGTG
GCCCGGCCTTTCTGCCACTTGAGAGTACTATAAATAATTCTTATCGACAA
AAAAACACGCACCCTATCGCCCTTGACTACTGCAAGGTCGGCGCCGGGGT
GGAAAGAAGAGGTCTGCCCTCCCTCCACCCCATTTTCCCCCGCATTTCCC
CCCCACATTTCTATTTTTCACGTATAAACATACCTTTCCGTCCCCATCCA
TCCGCCGCCAGCCGTTCCCCCCCTTCCCCCCTCCCCCTCCTTCCCTTCCT
CCCCCCCCCCTCCTCCCCTTCCTGGTCCTGCACAAAAGACGCGGCCAAGC
CCGTCCTCCGCCCATCCCGCGGCCCTCCCTCGCCTTGCGCCTCCTCCACC
AGGAGGAACCCTCGCTTTCTCCGGGCTTCTCGCGCCATTTTTCCAAGTTT
GTGA
back to top

Coding sequence (CDS) from alignment at KK037251.1:101143..102196-

>rna9010 ID=rna9010|Name=rna9010|organism=Nannochloropsis gaditana|type=CDS|length=528bp|location=Sequence derived from alignment at KK037251.1:101143..102196- (Nannochloropsis gaditana)
ATGCTACCGTCGCCTTCCCCTCGGGGAGGATATAAATGGCTCCACGCTGG
GTCCGCTCGCATATTCTGGGAGTGCTCTTTGTTTTGCTTCTTTTTGGCGG
ACAGAGAAAACACCAATGGCTGTGGCCCGGCCTTTCTGCCACTTGAGAGT
ACTATAAATAATTCTTATCGACAAAAAAACACGCACCCTATCGCCCTTGA
CTACTGCAAGGTCGGCGCCGGGGTGGAAAGAAGAGGTCTGCCCTCCCTCC
ACCCCATTTTCCCCCGCATTTCCCCCCCACATTTCTATTTTTCACGTATA
AACATACCTTTCCGTCCCCATCCATCCGCCGCCAGCCGTTCCCCCCCTTC
CCCCCTCCCCCTCCTTCCCTTCCTCCCCCCCCCCTCCTCCCCTTCCTGGT
CCTGCACAAAAGACGCGGCCAAGCCCGTCCTCCGCCCATCCCGCGGCCCT
CCCTCGCCTTGCGCCTCCTCCACCAGGAGGAACCCTCGCTTTCTCCGGGC
TTCTCGCGCCATTTTTCCAAGTTTGTGA
back to top
Synonyms
Publications