rna9002, rna9002 (mRNA) Nannochloropsis gaditana

Overview
Namerna9002
Unique Namerna9002
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length780
Alignment locationKK037251.1:79649..80311 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100797g2.5341.mrna
Orig protein idgnl|cribi|Naga_100797g2.5341
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:79649..80311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100797g2gene8728Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9002rna9002-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21701.1cds8972Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9002 ID=rna9002|Name=rna9002|organism=Nannochloropsis gaditana|type=mRNA|length=780bp
ATGAGACCTTGCGCCCGCAAGGCCGATATCAAGTCCTTCACCACAATTGC
TTCACTGTTCTTGTTGTCGTCTCTATCCACCCGCTCTGCCTACGGCTTTT
TGGCTTTACGGCAGGCCTCGGCGTCCTTCAACGTGTGCGTTGCAGGAGCC
ACGCCCTCTGGGAAAGCGGACGAGAAACCGACGCCTCCCCAAGGTCAGTC
GGCCTTTGTCCGGTCTCTATTCACCGACGTGGCTGAACGCCGGGATAAGG
AACAGGCCTCCATCAAAGCAGAAGCCAAAGCAGCCGCTGCCCAACGCTTG
GAGGCAGCCAAAATGCGGGGAGAGATCAACGTCCTGGGGGGGCCTCTGGA
GCTCTGCGGTACCGATCCGATGACGGGCTTCACCAGGGAAGGGTGCTGCA
CCACGGGTCCCATGGATTTGGGTTCGCATACGGTGTGCGCCGTGGTCTCG
GACGACTTCCTCCGTTACTCCAAGGCCCGAGGGAACGACCTCATGACCCC
CCGCCCGGAATACTCATTTCCGGGGCTGAAACCGGGAGACCGCTGGTGTC
TGTGTGCCTCGCGGTGGGCGGAAGCCTACGACGAAGGGGTGGCGTGTGCT
GTGGATTTGAAGGCAACACATATCAAGGCATTGGACGTCTGCAATTTGAA
CGCCCTGATCGAGCATGCGTTGGAGCCCCCACCTTCGCAGGAAGGCGAGG
GGGCGGGCGGGGGAGAAGGGGATGAGAAGGAGCAGAGCGGGGCTCAGAAA
GCGTCCGCGGGGAAGAAGGAAGATTTGTGA
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protein sequence of rna9002

>rna9002-protein ID=rna9002-protein|Name=rna9002|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MVVQTKKRQGRTLKCYRRVWHLEIASFLVLLKAVVRPRFMEGCPKACGRR
IDESRNSCSYSSVSISSRHESCFLHRKDAFKKFVVASKKGNARKPTHLAS
RGQRHRPPNAYAAPPEQHQNPFLPIIHGKLHTLIGNFLSMLSITRYKRPL
KWRLENGNSEIPSSLLEAPVPVWNAGCNARTSRPTGSTGLTNFKLVTGKK
LLWSAAVLLWHGWTVRGEDK
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mRNA from alignment at KK037251.1:79649..80311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9002 ID=rna9002|Name=rna9002|organism=Nannochloropsis gaditana|type=mRNA|length=663bp|location=Sequence derived from alignment at KK037251.1:79649..80311+ (Nannochloropsis gaditana)
ATGGTGGTGCAGACAAAGAAGAGACAGGGTAGGACTTTGAAATGTTATCG
TAGGGTTTGGCATTTGGAGATTGCTTCCTTTCTTGTGCTGCTCAAAGCTG
TGGTGCGACCTCGATTTATGGAAGGTTGTCCAAAAGCATGCGGGCGCCGA
ATCGATGAATCGAGAAATTCATGCTCGTATTCCTCTGTAAGCATCAGTTC
CAGGCATGAAAGTTGTTTTCTACACAGAAAAGATGCCTTTAAAAAGTTTG
TGGTAGCCTCGAAGAAGGGTAATGCAAGGAAACCTACACATCTTGCTTCC
AGAGGACAACGTCATCGACCCCCGAATGCGTATGCTGCCCCACCAGAGCA
GCATCAAAATCCTTTCTTACCTATTATCCATGGAAAGTTGCACACTTTAA
TTGGGAATTTTCTCTCTATGCTGTCAATTACGCGTTATAAACGTCCTCTA
AAATGGAGACTGGAAAACGGTAACTCCGAAATTCCGAGTTCCCTTCTTGA
AGCCCCCGTCCCTGTGTGGAACGCTGGGTGCAACGCACGCACGAGCAGGC
CCACAGGCTCGACGGGGCTGACCAATTTTAAGCTTGTgacaggaaaaaaa
ttgTTGTGGTCGGCGGCTGTTCTTTTATGGCATGGGTGGACGGTGCGGGG
GGAAGACAAATAA
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Coding sequence (CDS) from alignment at KK037251.1:79649..80311+

>rna9002 ID=rna9002|Name=rna9002|organism=Nannochloropsis gaditana|type=CDS|length=663bp|location=Sequence derived from alignment at KK037251.1:79649..80311+ (Nannochloropsis gaditana)
ATGGTGGTGCAGACAAAGAAGAGACAGGGTAGGACTTTGAAATGTTATCG
TAGGGTTTGGCATTTGGAGATTGCTTCCTTTCTTGTGCTGCTCAAAGCTG
TGGTGCGACCTCGATTTATGGAAGGTTGTCCAAAAGCATGCGGGCGCCGA
ATCGATGAATCGAGAAATTCATGCTCGTATTCCTCTGTAAGCATCAGTTC
CAGGCATGAAAGTTGTTTTCTACACAGAAAAGATGCCTTTAAAAAGTTTG
TGGTAGCCTCGAAGAAGGGTAATGCAAGGAAACCTACACATCTTGCTTCC
AGAGGACAACGTCATCGACCCCCGAATGCGTATGCTGCCCCACCAGAGCA
GCATCAAAATCCTTTCTTACCTATTATCCATGGAAAGTTGCACACTTTAA
TTGGGAATTTTCTCTCTATGCTGTCAATTACGCGTTATAAACGTCCTCTA
AAATGGAGACTGGAAAACGGTAACTCCGAAATTCCGAGTTCCCTTCTTGA
AGCCCCCGTCCCTGTGTGGAACGCTGGGTGCAACGCACGCACGAGCAGGC
CCACAGGCTCGACGGGGCTGACCAATTTTAAGCTTGTgacaggaaaaaaa
ttgTTGTGGTCGGCGGCTGTTCTTTTATGGCATGGGTGGACGGTGCGGGG
GGAAGACAAATAA
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Synonyms
Publications