rna9000, rna9000 (mRNA) Nannochloropsis gaditana

Overview
Namerna9000
Unique Namerna9000
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1527
Alignment locationKK037251.1:66835..69374 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101031g2.1268.mrna
Orig protein idgnl|cribi|Naga_101031g2.1268
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:66835..69374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101031g2gene8726Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21703.1cds8970Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna9000rna9000-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna9000 ID=rna9000|Name=rna9000|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp
GATTGGATTTTACACGGTACAGTGGATGATTCTGTGACATTTTCTTCCAT
TTGCTTGATTTTGCTGGCTGTTGAAGCAGGAGAGGAAGCGTGTTGACGTT
CCGAAAGCCAACAAATGATTCCCCTTGTTACTTAATAAAGCTACCGGGCC
CCATATTACTCTATACCATTTTGATGGTCATTCCTATATCTGTCTATGAG
AAATGTGATCCTTGCACGTTTTTGCCCACATTTTTGAATCGGGTTTCAGT
GTGATAAGAAACGGATAATCGAACATATGTCGTCGTAGCTTCGACGCTCA
CCTGGTGCGCTTTGCACGTATAATACTCCACAGGAAGTGCAGATAGTCAC
CGGAGTACCTGCCATTGTTTAACCTTTCAATGAATGCCAATATGCTTGAA
TCTTAGAACTGCGTTTAGTGTCTTAGAAAATTAGCTAAATTGTTTCGTAT
AAGGACTTGAGGCGGTCATTCCTGTATGTCTCGGAGTGTGAACTGTCTAT
TACAGACCCTCCTGCCAAGCGGTGTACTTCTTTGCCGTACAACTGATTCT
AATACATACATGTCAATAGATCTGAGGAACTCGAATTTTTGGACGTTCCT
GCATTTCCAGTTTGGACTGTTAACAAGCCTACAAGATGGTGTTGCGAAGC
TTTAGTCTCAGTCTCGTCCTCCTCCTCCCCCTCCTCTTCCATGTCCGTCA
CTGTCCCCACGCCACGACCGTCGCCTCCATGCACACTCCCACGTCAGACG
CCTCCGCATTTTCAGGTCCCCCTTTTCTGCCACGTCAGCGCCTTGTCAAC
ATTCGTTCAATTACCAAGGCACGCGGAGCCCATGTTGCTCCCGCTTACCG
GGTTGTTTCCGCAAGCCTCTCACCTGTCCACGCCTCACACCTACCCAACT
GTCGGGGAGGGGGGGAAGCGACCGGCTTTCGACTGCGCCCGGCCCTGCGA
CGACTAACTTCCTCCATTATCCGCAAACATTTTTTGGTGACCGGCATGGT
GATCGCAATCGTTTTGGCGAGATACAATCCGCACTTTGGACGCATCGGCG
GGCCGCTAGCGCCCGAATGGACCGTCAATACGGTCGGAGTTTCGGTTATC
TTCCTCCTCTCAGGGCTTAGTCTCCAGCTCCAAGAGCTGACCTCAGCGGC
GAAGGACTTCAAGCTAAACGCCGCCATCCAGGCCTTCAACCTGGGAGCGG
GTCCCCTCTTGGGCCTGGCATTCCAGCCCCTTCTCATCTTCGCTGGCGTC
GATGCTCGCCTGGCCACAGGGCTCCTCATCGTCAGCTGCCTGCCGACCAC
AGTCAACATGTGCATCGTCTTGTCCGGAGCCGCCGGCGCGAGCCTGGCTT
TGGCCGTCTTTAATGCCGTTCTTTCCAACTTTCTGGGGGTATTCGTGGCT
CCTGCGACAATATTCGCCTGTGTGGGGGCACAAACCATCAATGTTCCGTA
CGTGGCCGTCATCAAGAAATTAGTCTACAAGGTAGGAAGGGAGGAAAGGA
GGGAAGGAGAAAAAAGAGGAAGGGAGG
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protein sequence of rna9000

>rna9000-protein ID=rna9000-protein|Name=rna9000|organism=Nannochloropsis gaditana|type=polypeptide|length=245bp
MSLDGDRSRRPVLVRTPEGLPSQRNRPNRKRGRRTCVEQLHMLCCCLHSL
VPRVYRDSILGTRAAGRQPRWLEEDEEEEEEEEKIRQQGQRGRDGDRKNG
YEGNEKEREQLYEMVPISPREEEESDVRILLDTTHALKKSYDLSTCLPPP
HQSGGSSQGAKGTSCASRVDPEGAGTVEKSIDGAPWRWEESVGWRREGGK
GKGGEGGEASKAMLPECVICLEEFTEENPEIPTREEGGGGRGQWE
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mRNA from alignment at KK037251.1:66835..69374-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna9000 ID=rna9000|Name=rna9000|organism=Nannochloropsis gaditana|type=mRNA|length=2540bp|location=Sequence derived from alignment at KK037251.1:66835..69374- (Nannochloropsis gaditana)
CCTCCCTCCCTCCCCTCCTCTACCATCCTCCGTGGCAGACCCCAGCGCGG
GTCCACAAGAGCCACAAAGCGAAACAGCTTCTCCCCTCCTCCCTCCTCGC
CTTCGACCGCACTTTCCAGAAGGGGAGGGGAACGCACCGCAGGCTGGTGC
TCCTTTTCCTCTGGTCCACAAACCAAACCCATTGGAGGACCAAGGGTGGG
AGGAGGGAGGAGGAAGCAAGGCCAAAGGGGGGCCCCGGGTGGCGGCATTT
GGGCCGTAGTAAAGGAGGGATAAAGAGAGGAAGGGAAGGAGGAGGGGCGG
GAGGAAAGCGGGGGGGGATGTGGAGGACCGGCTCTTTGCAGAGGGGAACA
AGAACGACTGCAGTTGCTGCGGGAGGGCATGTTGAGACCGTGCGCGGTGT
GGAATGGGGCCCATGCACATGTGGGGAATGTTGAGTAATCTTTGGAAGAG
CGAGACGGCTGTACAAGAATCATGAATCGGAAGACAGAATGGAAGAAAAA
AAAAAGGACCGAGAAGACGGCTTGGGCAATTCGATGGAGCGCGTGCACGG
ATTTTCCGATCGATTGGAGCAACCCTGAAAACCAGCAAGAAAAATGCTCA
GTCATTTTATGTTCTTCCTTTTTCTTTAAGAATGAATCTTTAGATATGCG
GAAATCGAGTGTAAAGATTTGGGCGCCCTGTTCCTTCCCGTTGCGGGACA
CGCACTGCCTGCCTCCGCACAAACTGTTTTTTAACAAAGATTCACCAAGG
ATTCCACATCGGATGCGATGTTTGAGTAGAGTACTTATTCTTGAATATAT
ACCCATAGAAGTCCGAAAGACAAAATGTCACTTTTTATTCCAACCCCTGA
GTGACTTTTTTGGTTGCTTCGAAGAGTAGGGGAGGGAGGAGGTTAGATGT
GAACCCTCCCCCGATTTATGATCACGACCAAAAGCCATTCACGACTGTCA
GAAATCATCGCGCTACGCTTGTTCCAGGGTAAACGCTTTCAAAATTACAC
AAATACGGAGCAGCGCTTCTAAACGTGCAATAGCAAGGATGTCGCTAGAC
GGTGACAGAAGCCGACGACCTGTCCTCGTGCGAACGCCGGAGGGGCTACC
GAGCCAAAGGAATAGACCCAACAGGAAACGCGGACGAAGAACATGCGTCG
AGCAGTTGCACATGCTGTGTTGCTGCCTGCATTCGCTTGTCCCTCGGGTA
TATCGTGATAGTATTCTGGGCACAAGAGCTGCTGGGCGACAGCCGCGGTG
GCTTGAGGAGGATGAGGAGGAGGAGGAAGAGGAGGAGAAGATAAGGCAGC
AGGGGCAGAGAGGGAGGGATGGAGATAGAAAAAACGGCTACGAGGGCAAT
GAGAAGGAAAGGGAACAGCTGTACGAGATGGTGCCTATCTCGCCGCGTGA
GGAAGAGGAAAGTGATGTCCGCATCCTCCTCGACACTACCCACGCCTTGA
AGAAGTCGTACGATCTAAGCACGTGCCTACCACCTCCCCACCAAAGCGGT
GGGAGCTCGCAGGGAGCGAAAGGGACGTCGTGTGCGTCGAGGGTGGATCC
CGAGGGCGCGGGGACGGTCGAGAAAAGCATTGATGGGGCGCCGTGGAGGT
GGGAGGAATCGGTCGGCTGGAGAAGGGAGGGAGGAAAAGGCAAAGGGGGG
GAAGGAGGGGAGGCATCCAAGGCAATGCTGCCGGAGTGCGTCATTTGTTT
GGAGGAGTTCACGGAGGAGAACCCGGAGATACCTACACGTGAGGAAGGGG
GGGGGGGCAGGGGGCAGTGGGAGTGACCTTCATGACGAAGCGGTGCATGT
GATGCCCTGCCATGCTGCGCTGGTGGGTTTCAATCCACCCTTAAAAGAGT
CCTCCGCTCTTGTCTGCTGCGAGTCCACGACTATCTGCCTTGCCCACTTG
TACGATGACTCATCCTGCTTTACCCCTCCTCCCACCCTTTTCGGACCCTC
TCTGCTTCCAGTATGCTCTTGTGGAGAGAACCGGGCGCGGTTCCATCTCC
CCTGTCTCCTCCTCTATGTGGAGCGTGGGCCTTCACGACCAGGACGTCGA
CCGGGGCGGGAAAACGCCGGGAGGGAGGGGAGGACAAAAGAGCGGCCCGT
CTGTCCGACCTGTCGCGGTCATTTGTATTGGGAGGAAATTGGCTGAGAGG
GGGGAGGCAGATGAAGGGGAACGACAGGGAAGGGAGAAATGGAGGGGCTG
GGGGAGTGTGGCTGGCTGGGAGGTACGGGCATCTACGTGGTGTTAACAGC
GTGCTATTATGGATGCTGGTCAAGTCGGGGGGGGCGGGAGCGTCAGGGAG
TCTGACGGCAGGGGAAACACAGTACCATGTCCGCGGCGAAGGTGATGGAT
GTAGAGACACGTATAGGCAGGTCGAAGAGAAGGGTCCAGGGAATGAATGT
CATAGAATGCATGCTGGGGCGGTCGTGGTCTTCATTTTTGGTTGTGTAGG
GAAGGATGTTCCACGAGGGGTGTAGAAAAAAATCTGAGGAGGAAGCAAAT
CCAAATTCACAAGAAACGAAGGTCGTGAAAAAATAATCCA
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Coding sequence (CDS) from alignment at KK037251.1:66835..69374-

>rna9000 ID=rna9000|Name=rna9000|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at KK037251.1:66835..69374- (Nannochloropsis gaditana)
ATGTCGCTAGACGGTGACAGAAGCCGACGACCTGTCCTCGTGCGAACGCC
GGAGGGGCTACCGAGCCAAAGGAATAGACCCAACAGGAAACGCGGACGAA
GAACATGCGTCGAGCAGTTGCACATGCTGTGTTGCTGCCTGCATTCGCTT
GTCCCTCGGGTATATCGTGATAGTATTCTGGGCACAAGAGCTGCTGGGCG
ACAGCCGCGGTGGCTTGAGGAGGATGAGGAGGAGGAGGAAGAGGAGGAGA
AGATAAGGCAGCAGGGGCAGAGAGGGAGGGATGGAGATAGAAAAAACGGC
TACGAGGGCAATGAGAAGGAAAGGGAACAGCTGTACGAGATGGTGCCTAT
CTCGCCGCGTGAGGAAGAGGAAAGTGATGTCCGCATCCTCCTCGACACTA
CCCACGCCTTGAAGAAGTCGTACGATCTAAGCACGTGCCTACCACCTCCC
CACCAAAGCGGTGGGAGCTCGCAGGGAGCGAAAGGGACGTCGTGTGCGTC
GAGGGTGGATCCCGAGGGCGCGGGGACGGTCGAGAAAAGCATTGATGGGG
CGCCGTGGAGGTGGGAGGAATCGGTCGGCTGGAGAAGGGAGGGAGGAAAA
GGCAAAGGGGGGGAAGGAGGGGAGGCATCCAAGGCAATGCTGCCGGAGTG
CGTCATTTGTTTGGAGGAGTTCACGGAGGAGAACCCGGAGATACCTACAC
GTGAGGAAGGGGGGGGGGGCAGGGGGCAGTGGGAGTGA
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Synonyms
Publications