rna8993, rna8993 (mRNA) Nannochloropsis gaditana

Overview
Namerna8993
Unique Namerna8993
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length945
Alignment locationKK037251.1:38125..39021 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102296g1.7608.mrna
Orig protein idgnl|cribi|Naga_102296g1.7608
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:38125..39021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102296g1gene8719Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8993rna8993-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21710.1cds8963Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8993 ID=rna8993|Name=rna8993|organism=Nannochloropsis gaditana|type=mRNA|length=945bp
ATGGGGCCCACTGCGGGGGTCGTAGCAGCGTCCGCAGGTGCGACAACGCC
AGCGGATGTGTTTGGGGCGCTTGGGATAGGAGGACCACCAATTGAGGCGG
CGATGGCCTTGCACCGTTGGCTCCAAGGGGAAGAGGCGGGATTGGACGAG
CCCAGGCCACGCAGCAGCTCCATATACTTCCAACCGGAGGGAGGGATTAT
GTCGGGGCATGGCGTGCTCGAGGATACTCTGTCGTTGTTCATGGTGCAGG
CGGTCATCATCATCACAGTGACACGCTTGCTCTCTTTGGGCACCAAATGC
CTGAAGCAGCCGCGCGTCATCATGGAGGTGGTGGGGGGCATCCTCCTGGG
TCCGTCTGCCCTCGGACATATCCCCGGGTATCTGGACACGGTTTTCCCGA
GCCAGTCCCTCGGCTATCTGGCGCTGGTCGCCAACATCGGCCTCGTCCTC
TACCTCTTCCTCGTTGGCGTCGAGCTGGACCCCGAGGTCCTCCGTCGCAA
CGGGCACAAAGCGGTCTCGATCGCCGTGGTTGGGATCGCCATCCCCTTCG
GCATGGGCTGCCTCATCTCCCCCCTCCTCTTCAACAAGCTCCTCGTCAAG
GAGCCCGGGTACGAAGGCGCCGCCTACAGCTCCTTCCTCGTCTTTGTGGG
CGTGGCCATGTCTATCACCGCCTTCCCCGTCCTCGCCCGCATCCTCCTGG
AGTCCAAGCTCATCCTCTCCACGGCCGGTACGCCCCCCCTCCCTCTCTAT
TTGGAAATTTGCGCTCGGACTTCGCGTCCACCGGGATCGGCCACCCTCGC
TTCCGAGCCCCAAGCCCTTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCTA
GGCGTAATGACCATGGGCGCCGCGGCCCTGAACGACGCGATCGCCTGGTG
CTTGCTGGTCTTGGCGCTTTCCATCGTCCACTCCGGGGAGAATAA
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protein sequence of rna8993

>rna8993-protein ID=rna8993-protein|Name=rna8993|organism=Nannochloropsis gaditana|type=polypeptide|length=105bp
MLTPAAQEQADRYADFFADVGPKGRFHNVNLLRLEPVALETGLDRTHEML
MKDILTEASKKGEFAYDLIVVGYLPSVWENERSSSNFLGTAAGSNMSSAA
PSRSR
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mRNA from alignment at KK037251.1:38125..39021+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8993 ID=rna8993|Name=rna8993|organism=Nannochloropsis gaditana|type=mRNA|length=897bp|location=Sequence derived from alignment at KK037251.1:38125..39021+ (Nannochloropsis gaditana)
TCTCGTCAACATTACCATCATGCTCACGCCAGCCGcgcaggtagggaggg
agggagggagggagggaaggagggcgggaggggaggggaggaggggcgca
ggaggcaggaagcacATGGTGACGCCAtcgcgccttttcccctgatCCTG
TCCTGTCGTCCCGGCATGTCTCAGGAACAAGCGGATCGATACGCCGACTT
CTTCGCAGACGTCGGTCCCAAAGGCCGCTTCCACAACGTGAACCTGCTCA
Ggtagcgggggagggaggggagggaggggagggagggagggagggagggc
tcgtCGATTTGTGTGCTTGTGCTTGGCTTATCGTCAGCCTGGTCCCTGCC
TACTGCAGGCTGGAGCCGGTTGCGCTGGAGACGGGCTTGGACCGGACGCA
CGAGATGCTCATGAAGGACATATTGACAGAGGCCTCGAAGaagggtaggg
agggagagagggagggagggagggagggagggaggaagacggagggaggg
aggaaatggagaaggACTGGCGAGAGATAAGGAAAGGGGCTCTTGTTCCC
AACGGACGCGGACCCAGCCTCTTGTTccctcatcccttccctcctttcac
ccccccccccccccccggtagGAGAGTTCGCCTACGACCTGATCGTGGTG
GGGTACCTGCCCTCTGTCTGGGAGAACGAGCGGAGCAGCTCCAATTTTCT
GGGAACAGCGGCCGGGAGCAACATGAGCAGCGCCGCTCCATCCCGTAGCA
Ggtgagggatggggggaggaaggaagaaagggatgggaaaggaagggagg
aaggggatggggaaagaagaTGACAGAGGAGCTTGGATGGATGTTTTCGA
CCTCTTGTTGTCGATCGAGGTTTCAATATTATACCCTCCGTCTCACA
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Coding sequence (CDS) from alignment at KK037251.1:38125..39021+

>rna8993 ID=rna8993|Name=rna8993|organism=Nannochloropsis gaditana|type=CDS|length=1272bp|location=Sequence derived from alignment at KK037251.1:38125..39021+ (Nannochloropsis gaditana)
ATGCTCACGCCAGCCGcgcagGAACAAGCGGATCGATACGCCGACTTCTT
CGCAGACGTCGGTCCCAAAGGCCGCTTCCACAACGTGAACCTGCTCAGGC
TGGAGCCGGTTGCGCTGGAGACGGGCTTGGACCGGACGCACGAGATGCTC
ATGAAGGACATATTGACAGAGGCCTCGAAGaaggGAGAGTTCGCCTACGA
CCTGATCGTGGTGGGGTACCTGCCCTCTGTCTGGGAGAACGAGCGGAGCA
GCTCCAATTTTCTGGGAACAGCGGCCGGGAGCAACATGAGCAGCGCCGCT
CCATCCCGTAGCAGgtgaATGCTCACGCCAGCCGcgcagGAACAAGCGGA
TCGATACGCCGACTTCTTCGCAGACGTCGGTCCCAAAGGCCGCTTCCACA
ACGTGAACCTGCTCAGGCTGGAGCCGGTTGCGCTGGAGACGGGCTTGGAC
CGGACGCACGAGATGCTCATGAAGGACATATTGACAGAGGCCTCGAAGaa
ggGAGAGTTCGCCTACGACCTGATCGTGGTGGGGTACCTGCCCTCTGTCT
GGGAGAACGAGCGGAGCAGCTCCAATTTTCTGGGAACAGCGGCCGGGAGC
AACATGAGCAGCGCCGCTCCATCCCGTAGCAGgtgaATGCTCACGCCAGC
CGcgcagGAACAAGCGGATCGATACGCCGACTTCTTCGCAGACGTCGGTC
CCAAAGGCCGCTTCCACAACGTGAACCTGCTCAGGCTGGAGCCGGTTGCG
CTGGAGACGGGCTTGGACCGGACGCACGAGATGCTCATGAAGGACATATT
GACAGAGGCCTCGAAGaaggGAGAGTTCGCCTACGACCTGATCGTGGTGG
GGTACCTGCCCTCTGTCTGGGAGAACGAGCGGAGCAGCTCCAATTTTCTG
GGAACAGCGGCCGGGAGCAACATGAGCAGCGCCGCTCCATCCCGTAGCAG
gtgaATGCTCACGCCAGCCGcgcagGAACAAGCGGATCGATACGCCGACT
TCTTCGCAGACGTCGGTCCCAAAGGCCGCTTCCACAACGTGAACCTGCTC
AGGCTGGAGCCGGTTGCGCTGGAGACGGGCTTGGACCGGACGCACGAGAT
GCTCATGAAGGACATATTGACAGAGGCCTCGAAGaaggGAGAGTTCGCCT
ACGACCTGATCGTGGTGGGGTACCTGCCCTCTGTCTGGGAGAACGAGCGG
AGCAGCTCCAATTTTCTGGGAACAGCGGCCGGGAGCAACATGAGCAGCGC
CGCTCCATCCCGTAGCAGgtga
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Synonyms
Publications