rna8990, rna8990 (mRNA) Nannochloropsis gaditana

Overview
Namerna8990
Unique Namerna8990
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length897
Alignment locationKK037251.1:27156..29387 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100183g8.8960.mrna
Orig protein idgnl|cribi|Naga_100183g8.8960
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037251.1supercontigKK037251.1:27156..29387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100183g8gene8715Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21713.1cds8960Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8990rna8990-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8990 ID=rna8990|Name=rna8990|organism=Nannochloropsis gaditana|type=mRNA|length=897bp
ATGGATACGTGCGCTCCCTCTAGTACGCCGTTGCGGCAAAAGAAAGTCTC
ACCCGTGGCAGTGACTGAGGCGGAGGAGACACGACTTTTGAGGACTTTGG
CGTTATGTACGGCAGGCATCCTTCTCCTTGATATCTGGAGCTGGATTTGG
CCGGGTGTGCTCGGAGGGTCTGAGATGCACGCAGCCAGCGACTTCGACCC
CTCCTCTTTCTTCTACCTGCTCCCAATCACCCTGCACGTCATGGCCGGAC
TCTGGTTCTTCACAAGCAAGCAGCATCCACCCCTCCCTTTCTGGCGCCGC
GTGGTGTGCCTTCGCCTCTTTTCCTTCCTTTGTCTGGCCTTGGCGGTACC
CGCCCTTATCGCTCGTGTGGTAACGCTGCGAACCTACTGTCTTTTAGAGG
GCCGGGTCACGGCCGACACCACGGAGGGGGATGTCTTCAAGGCCTGCACT
GACGTCCGCATGAACAACACGAGCCTGATCGCTGTGATCTACGCTATTCT
AGGCGTCTGTATGGTACAGGCCTTAAACGAGCTGGAGAGTCTATGCACAT
GGCGGCATCAGCAACAATGCAGCACTGCGCCCTACCCACGTTCCCATTAC
TTTTCCCGCCCTTCATGCTGGGCCACGGGTGCCGGGTCGATATGCGCTTC
CACGCAGCAGGCAAGTGATGACGGAGATGGCCATGATGGTGCAGAAGCTC
TTTTATATCACACCCTTTCTGCTTCTGACGATAACCGGTGCCTGTTCGGA
GACGCCTCCATGTACGGTGAGCGCACTACCCCTCTGCTGCCGGCCCCTGT
TCCATCCTCTCTCACTCCGCCCCCATCCACGGGACATGTGATGGGAAGCA
GTGAACGTAGCGCCTTTTCTTCGTACGTTGTAGGAAGCTGTGTATAG
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protein sequence of rna8990

>rna8990-protein ID=rna8990-protein|Name=rna8990|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MKTWTCPLSPTRRSNTIPRPCGRWPSTAQLECASKIIKTRTKEYFACTPW
FVGSSLDYLGIAFKLGGQRFIPLQVPCKKSRIVLSALHFFFSEGILIYLN
LFSV
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mRNA from alignment at KK037251.1:27156..29387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8990 ID=rna8990|Name=rna8990|organism=Nannochloropsis gaditana|type=mRNA|length=2232bp|location=Sequence derived from alignment at KK037251.1:27156..29387- (Nannochloropsis gaditana)
CGAAATGAACGCACTTACCAATGACACACCCCATCAAAGGTGCATCTTGT
CATACTCGGACCGGGCTCTTTTTGGGGGACTAAACAGCGCCTAGGAGGGG
AGGAACAAAGTGCCCCCCTCCTCCGACGTCCGGGATGGCGCGATCGAGTT
TGTCACGAATCTCAAGGCAGGAATAGAAAGGTCAAATCCAACCCCTCCTT
CCGCTTCCTGATGGATTTCGAACGGAAAACAGATTCAAGCATAAGCTCCC
CTTTGCGAAAAAAATATTGGATGACTGGACACTACTATCCTACTTTTTTT
ACAGGAAACTTGAAGGGATATGAAGACCTGGACCTGTCCTCTCTCCCCTA
CAAGACGTTCAAATACCATTCCAAGGATATGAAGACCTGGACCTGTCCTC
TCTCCCCTACAAGACGTTCAAATACCATTCCAAGGCCGTGCGGGCGGTGG
CCTTCCACCGCCCAGCTTGAATGCGCTTCTAAAATTATCAAGACACGAAC
CAAGGAGTACTTCGCATGTACCCCGTGGTTCGTTGGTTCGAGTCTTGATT
ATCTTGGAATCGCATTCAAGCTGGGTGGGCAGAGGTTCATACCCCTTCAA
GTTCCCTGTAAAAAAAGTAGGATAGTATTGTCCGCTCTTCATTTTTTTTT
TAGCGAAGGGATCCTTATATACTTGAATCTGTTTTCCGTTTGAAATCCAT
CCGGAAGCGGAAGGAGGGGTTGGATTTGACCTTATCTGTCCCTGCCTTGA
GATTCTCGACGAACTCGATGATCGCGCCATCCCGGACGTCGGAACGGGAC
TTGAAACACCCAGGGAAGCTCTGTCACGACAGGGGATGTCCCATTGGCCA
CGTGCGATCGGAGTTCCCTGGTGGTCTTCACCTTCCCAAGATACGTCAAC
GCGTTAGTCCTGCGCAGACGAACACACTCATTATATGTCCATCTGTACAC
CCCACACCATCTGGATAATGTGATTTGTTGGGTGGTGTCGAGCTCAAGCT
TCATTTGCCTCGTCACCGTATCCTTCTTTGTGCACATCCCGTAGTTGTCG
TTTTTCCGGTTTCCTGCTGATCGCCTGTCGTTGTTGCGGGAACGAAGAAG
TTGACGACCGATAAAGGGTCCTCGGCAAGCTCGTTCTCGGTTCCACACTC
TTTTTCTCCGCCATGAACCACGAGTCCCACTCCATGGCTGTGGAAGATGG
ACTCGAGTCACTTAAACACGAAGCGACAGAGCCTGTCACGGAAGGCAATT
ACAACTTCTTCGACAGCTCGTTTTAAGACGAGGTCCAAGAGAGTTTGCAG
TCCCCGGCGCTAGACGATGAGGCCTGATCCAATTTCGCTGACGGAGCGAT
GAGAAGGGTAGCTATAGCGGAGGTCTTGGATTTGCCTTTCAATGTCTTCT
TTCTGATGCGAAGAGCTGACTCGGGCTTAGGTGACCTCTTCCTTTTGGTC
TGGTTATTTGTCATTGTCACCAAATTTAAGGAAACGTTTGTCCATAGAAA
TCTGTGTTGAAAAGGGCAGTGTTAGAAGTCGCCGAAGAAGGTGAACGATA
CCGGTGCTACAGGGAGTCATAGCAATACTAAAAATAGAAAAGCGCAACAA
TACTAGGTACTGAGTGGTAGCTACAGGGAATAGTGGGTAGAAAGGAGGTT
CGGGACGACTGGAAAAGCGCACTTAATAGTAGGTACCGAGTGGTAGCGCC
GCTGGTACTACATTTAGTAGCAAGAGAAGACGGAAAGGGGTTTCAGGACG
ACTAAAACAGCCTACTACTTCAAGCTACTGAGTGCTGCTTTTCATTGCTT
GTAGCTACCGCTACTTGTGGGTACGCGTAACCAAAAGCTAGCAAGGAGGT
TCGGGACGGAGGTCGAGCAACCGTTCCTATTTCGAACGAGAAGCCCGCTC
CGGGTAGCCAAAGGAAGGCAACGGCACGTCATGTACGGGGCTCGGGGTCA
TGTAGATATTGATTTCTCGCACTACAAACCTAATGATATACTTTGTCTTG
TGCCACAGACTTTTTACACATCCCATACAATGTCACATTTTCGTACGCAC
CATCTCAGACCTTCCGAGCACGCCCGGCTAAATCCAGCTCCAGATATCAA
GGAGAAGGATGCCTGCCGTACATAACGCCAAAGTTCTGTAGAAAAGAGGA
GTATTGACTAGGAAGTAAGCGTTTCTGAGCATACTGCATACTGGCGATGT
ATTACATCAAAAACAATGCACAAATTGTACAT
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Coding sequence (CDS) from alignment at KK037251.1:27156..29387-

>rna8990 ID=rna8990|Name=rna8990|organism=Nannochloropsis gaditana|type=CDS|length=315bp|location=Sequence derived from alignment at KK037251.1:27156..29387- (Nannochloropsis gaditana)
ATGAAGACCTGGACCTGTCCTCTCTCCCCTACAAGACGTTCAAATACCAT
TCCAAGGCCGTGCGGGCGGTGGCCTTCCACCGCCCAGCTTGAATGCGCTT
CTAAAATTATCAAGACACGAACCAAGGAGTACTTCGCATGTACCCCGTGG
TTCGTTGGTTCGAGTCTTGATTATCTTGGAATCGCATTCAAGCTGGGTGG
GCAGAGGTTCATACCCCTTCAAGTTCCCTGTAAAAAAAGTAGGATAGTAT
TGTCCGCTCTTCATTTTTTTTTTAGCGAAGGGATCCTTATATACTTGAAT
CTGTTTTCCGTTTGA
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Synonyms
Publications