rna8981, rna8981 (mRNA) Nannochloropsis gaditana

Overview
Namerna8981
Unique Namerna8981
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2436
Alignment locationKK037250.1:630422..630893 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102638g1.8965.mrna
Orig protein idgnl|cribi|Naga_102638g1.8965
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:630422..630893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102638g1gene8706Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8981rna8981-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21722.1cds8951Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8981 ID=rna8981|Name=rna8981|organism=Nannochloropsis gaditana|type=mRNA|length=2436bp
TGGTGACCACCAAAAGCAACACTTTGACACACATGTCTCACTACCCTTTA
TATGACGTTTTCATGCGCACGATTCTTGCAGCAACTACAAGCAACAGCTA
CAACAGGTTTCAACCATGCGTTACACCCAAGCCTCTTCTGTAATTATGCT
TATGGTGGCCTTTGGAGCCTTTTTGGGCGACAATTTCGCGTCCTCTGCAC
CCACCGCTGAGGATCTCAAAGCTCAAGCGCCTCAAGGGCCAATGCTGCCC
CTTCGTCCCATTGCTCAGACGCCATTTCACGGCCCGTCGTTTATTGTGGG
TGGTGGACTTGCAGATCGTTCGGACTCCAAGTGGACTGTAGCGTTGGTGA
CAGATACCCACGGCCGTCTCTTCCAATTTTGCGGAGGGACTCTGATTTCT
CCCAAGTTTGTTGTGACGGCTGCCCATTGTGTCGCAGCCGGGTATGACAT
GTCAGCAGTGGTCGGGCGCTACCAACTCTCCGACGCGTCCTCGGGAGAGA
TGATTAAAGTCGTAGAGGCATTCATGCACCCGGAATACGACCCACAGACA
ATGCAAGGAGACATCGCCATCCTGCGCCTGGAGCGTGCTGTGTCCTCTGA
CATCCCTACCTTGCCCCTCATTCCTCCCACTAAGGCGAAGATGGTCAATG
AAGGGCAGCTGGTTACAGTGCTCGGTTGGGGCCTGACAGAAGAACGGAGC
CAAAAAGTTGATTCGGTCAAGGGCGGCCTTCCGGTCCAAGGCTCAGGGAC
GGACGTGCTGCGGGCAGTCACCCTGCCTGTTGTCGCCAATGCCAAGTGTA
ACGAAGAGTACCGTGCGGTCACCGCAAAGGATTCGATTCTTGACGAAGAA
GTCTGCGCAGGTGTGGACCGCGGGGGGTTGGATTCTTGCCAAGGGGACAG
CGGAGGGCCGTTGACCGCCACGGTGAATGGTAAAACCTACCTCTTCGGTG
TGGTCTCATGGGGCGTCGGGTGCGCGCGCGCCAAGGTACCCGGAGTCTAC
ACGCGCGTCTCCTACCACGCGGACTGGCTGGCCTCCAAGATGCTCTTGGA
GGTGGCCACCGGCTCGGGTCGAGGCCTGGGCGCCGTCAACGTCCTCTTTG
CAGGCGTGAACCGTGCGGCGGCTTTCTCTGTCTACATCCGCTCGTTGGCC
TCCAACGCCCTTGGCCTCACCCTAGGCTTTGCCAAAGGCTCGTCCTCGAA
TTTCAATATCGACGAATCTAAACTTTCCTTGCCGGCATCGGGGGCCGTGG
AGTCTGCGACAGTCTCTTACAAGTCCACCCGCGCCGAGGTCGCCTCCGCC
GAGGTCTCTCTGCAAATCAACGAGGGAGGGAAGCAGGTGGGCGAGCAAAC
GATTGCACTGACGGCCTTCGCCCTGCCGGTGGCGGACTTTGGGAAGGCAT
TTCCCGGCGAATGGTTCTCCGGCGCGGACAGTGGGGCAAACGCGTGGGTG
GTGGATGGGGGCGAGATCCATTCCGGCAACACGCACGACGCGCAAACCAA
CGTCGCTTTGCTGTACCTGAAGGGCAGCGGTGTCCTGAATTTCAAGTGGC
GGAGTTCTTCCGAGGAAACCTACGACATTGTCTACTTCTTCTTGGACAAC
GAGCCTGTGGATGCCCTGACCGGGGACTCGGGCTGGCTGAGCAAGAGTCT
TCTCATCGAGGGGGAGGAGGAGGAGGAACATACCGTGGCGTTTGCCTACG
TGAAGGACAAGTCAATGGGTAAGTACCAGGATAAAGCCTTTGTAAAGGAT
CTCCACTTTGGGGCCATGGCAGATGCTGGCATGGAACGCTTCGCGCCTAT
TCTCCCAAAGGGCAAAGCAGGGGCGCGTCCCGCCGGGAAGGTTGCCAAAG
GACGAGGATTGCGAGGCTCTGGCGACGATGGCGTGGTCTCCGCGTGAGAG
AGACAGCGCGGACGGGAACCCGAGCCATGACCGCAGGGAAAAAGGGGTAG
GAGGGTGAGTCAATGTGGCGAGAGGAAGAAGCCTGCAAGACCAACGCCAG
CTGTGGAGACGGGGAAAGGGAGGGGCGGAATCCGCGGGAGACAGTCAGGC
GTCCCGCTCTCTGCACGCGCACTGGGGTCCAGTGCTGGCGGAATTGGGTT
GACGGGACAGGGCGATTTAAAGTGGGGCATATCAAGGGCTGAGACAGAGG
AGTTGAGGGCTAGACACATGTGGGAAAATGCATGCTGGATAGGCGAGGTG
CGATGGTCGGTGGGTGCTTGTACAGGGAGAAAAGGGGCACAAAGGAGGGA
GAACGCTTAGGATTCACCCGCTTTCGAGGGTCTGGAAAGGAATGAATAGG
GAAAGAGGATCTTTCCTTGCGTTTCTTATCCAGCATACGCTCTAGCTGGC
CCATGTACGGTGGCTTGTAATCATATGATGGGTGACGCCAACACTATAAC
GAAGAACAGAAGTCAAACTGAACCATGAACGCAAGC
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protein sequence of rna8981

>rna8981-protein ID=rna8981-protein|Name=rna8981|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MVNVEISCTCPHLDVGKLSKPAALPSPPSAIFTAPTSSPSASPTGSRALK
RKPAESISSVRTQALANYHRFLQKEEQSMQRAASTGIINDGRGSFNARIE
SAAITTAHFSR
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mRNA from alignment at KK037250.1:630422..630893+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8981 ID=rna8981|Name=rna8981|organism=Nannochloropsis gaditana|type=mRNA|length=472bp|location=Sequence derived from alignment at KK037250.1:630422..630893+ (Nannochloropsis gaditana)
TAGACAGGTGCCATGGTGAATGTGGAAATATCTTGCACGTGTCCGCACCT
GGATGTAGGCAAATTATCAAAACCGGCAGCAttaccatctcctccatcag
ccATTTTTACTGCCCCTacatcttctccttccgcttcaCCCACGGGCTCT
CGTGCTTTAAAACGGAAACCAGCGGAGTCAATTTCATCAGTACGTACTCA
AGCGTTGGCAAATTACCATCGCTTTCTGcaaaaagaagagcaaaGCATGC
AAAGAGCAGCATCCACAGGCATTATCAacgatggaagaggaagcttcAAC
GCCCGAATTGAAAGTGCTGCGATAACAACGGCACATTTCTCTCGGTAAGA
ACACGCAAATTTAACCCTTAAAGCTCTCCTTCGCTCCTCTAATGCGTTAA
AGATTCGTGATACAGGTATTTTTTCGACCaaatttccttccctgcATCCT
GCTTGAGTGCTTCGATCTTTCT
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Coding sequence (CDS) from alignment at KK037250.1:630422..630893+

>rna8981 ID=rna8981|Name=rna8981|organism=Nannochloropsis gaditana|type=CDS|length=336bp|location=Sequence derived from alignment at KK037250.1:630422..630893+ (Nannochloropsis gaditana)
ATGGTGAATGTGGAAATATCTTGCACGTGTCCGCACCTGGATGTAGGCAA
ATTATCAAAACCGGCAGCAttaccatctcctccatcagccATTTTTACTG
CCCCTacatcttctccttccgcttcaCCCACGGGCTCTCGTGCTTTAAAA
CGGAAACCAGCGGAGTCAATTTCATCAGTACGTACTCAAGCGTTGGCAAA
TTACCATCGCTTTCTGcaaaaagaagagcaaaGCATGCAAAGAGCAGCAT
CCACAGGCATTATCAacgatggaagaggaagcttcAACGCCCGAATTGAA
AGTGCTGCGATAACAACGGCACATTTCTCTCGGTAA
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Synonyms
Publications