rna8970, rna8970 (mRNA) Nannochloropsis gaditana

Overview
Namerna8970
Unique Namerna8970
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length993
Alignment locationKK037250.1:604067..604449 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103969g1.1698.mrna
Orig protein idgnl|cribi|Naga_103969g1.1698
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:604067..604449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103969g1gene8695Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8970rna8970-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21733.1cds8940Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8970 ID=rna8970|Name=rna8970|organism=Nannochloropsis gaditana|type=mRNA|length=993bp
ATGTGCTCCACGTCACAGCCAACACGGAGAAAAAAGAGATGGGGGGGCGG
CAGCACATCAACTTCAAAGGGCCCTTTGCTCCTTCTCGTCCTCCTGACGG
GCCTGTGCGGTCAAAGCATCGATGCTTTTCTTCAGGTTCCTTCACACAGG
GGTTCTTTGTCTAGAAGACCGGCATCTGAATGCGTGGCAGCGGTGACATT
GCCAAGAAGTGAAATTATTTTAAAGGCAGGTAAGCGTGGAGGAGGTGGCG
GCAAGTACGATAGTCCCAAAAGGAAGCAAGCACATCTTCAGCAGAAAGGG
TTAGGGAGGAACGACCTTCCCCCGGCATCTTCCCCCTCCTCTTCCCCTCC
GGCTGATCCTCCCGGAGTGTTATGGGAAGGTGAGGAAGAGGGTGACGACG
AGGATGAGGAAGAAATGGATGCGGAGATATTGGAGTTTCAGGGGTTGATG
GAGCGGGGGGCATTTCAATTGTTAGACCCGGACGATGTGGAGATAGACGA
GGCATACGACGCGTTCGACGCCGAGGACGAGGACGAGGACGAGGACGAGG
GGGAAGAAGGGGCGGAGGGAGGGGCGGAGAGAGGGGAAAGCCGGCCCAGG
AACGACCCGGAATGGCAGTTTTTCGACACGGCCAAGGTCTTTGTCAAAGG
CGGGGACGGCGGCGACGGCTGTGTAGCGTTTCGGCGGGAGAAATACGTGG
ACATGGGGGGTCCGAACGGAGGGAGTGGGGGAGGAGGGGGCAGCATCTAC
TTCCGCTGCGACGAAGGCTTGAACACGCTCTCTGGCTTGCGGCAAAAAGT
GCATTGGAAGGCAGGCGGGGGCGCGCGGGGGCAGGGCAAGAGTCGGACGG
GGGCCACGGCTCCGGACGTGGTGGTGGACGTACCTCCGGGTACGATTGTG
AGGACCCAAGACGGGACCTTGGCGGGGCAATTGGTCGAGCACGGGGAGCG
GGTGGGGAACCGGGCGCGGAGCGATGGCTGCAGGTGGAATTGA
back to top

protein sequence of rna8970

>rna8970-protein ID=rna8970-protein|Name=rna8970|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
RRGNPNHSAVARCRGKGRSAACAWCLVLIPPLPFLVVGVENAAGGEGGGR
RPLGRRGAGASGRGELSDVVPNHHRSQVPRPVPRGREGGRREGGSEGGRK
GGREGGK
back to top

mRNA from alignment at KK037250.1:604067..604449+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8970 ID=rna8970|Name=rna8970|organism=Nannochloropsis gaditana|type=mRNA|length=383bp|location=Sequence derived from alignment at KK037250.1:604067..604449+ (Nannochloropsis gaditana)
AGGAGAGGGAATCCGAATCATTCCGCGGTAGCAAGAtgcaggggaaaagg
acgaaGTGCCGCCTGTGCCTGGTGCCTtgtcctcatcccccccctcccct
tcctcgtggtAGGTGTGGAAAATGCTGCgggtggtgaaggaggaggaagg
agacctCTTGGACGGCGAGGTGCCGGTGCctctggacgaggagagctATC
GGATGTCGTACCAAATCATCACCGATCCCAAGTTCCCCGGCCAGTTCCGc
gtggtagggagggagggaggagggagggagggagcgagggaggaaggaag
ggagggagggagggagggaaataggACATGtctcgttcctccttcctcat
tgaCCGTCTCTCATGTCTCCTCCTAACCCACCC
back to top

Coding sequence (CDS) from alignment at KK037250.1:604067..604449+

>rna8970 ID=rna8970|Name=rna8970|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at KK037250.1:604067..604449+ (Nannochloropsis gaditana)
AGGAGAGGGAATCCGAATCATTCCGCGGTAGCAAGAtgcaggggaaaagg
acgaaGTGCCGCCTGTGCCTGGTGCCTtgtcctcatcccccccctcccct
tcctcgtggtAGGTGTGGAAAATGCTGCgggtggtgaaggaggaggaagg
agacctCTTGGACGGCGAGGTGCCGGTGCctctggacgaggagagctATC
GGATGTCGTACCAAATCATCACCGATCCCAAGTTCCCCGGCCAGTTCCGc
gtggtagggagggagggaggagggagggagggagcgagggaggaaggaag
ggagggagggagggagggaaatag
back to top
Synonyms
Publications