rna8968, rna8968 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8968
Unique Name	rna8968
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3339
Alignment location	KK037250.1:600034..601849 +

Link to JBrowse

Properties


Property Name	Value
Product	cysteine protease
Orig transcript id	gnl\|cribi\|Naga_100270g8.5531.mrna
Orig protein id	gnl\|cribi\|Naga_100270g8.5531
Gene	Cys
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:600034..601849 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Cys	gene8693	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8968	rna8968-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21736.1	cds8938	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:600034..601849+
coding sequence from alignment at KK037250.1:600034..601849+

mRNA sequence

>rna8968 ID=rna8968|Name=rna8968|organism=Nannochloropsis gaditana|type=mRNA|length=3339bp
AAGGCTCGCGTGAAAACAGGCTCATGGTGAGGGATTTGGAGATGCTTAGT
TGCCTTTCTAGTCGTCAAAGTGCTGCATGGGACCATGCCATTTCCAAACT
ACGTGCCATCACAGTAGAAGCTTCTAGGATCATCGGTGTCTTCCCTCGCT
TCATCGCTGGGCTTGCGACATCAGCACATCGTGCGCCTTCCTAACTAATA
TTTGCGTTAGATTGTTCCTTGTGTCCATGGTGACCTGTTTGGTTCGAGTG
GACTGTGCATAGACGGGGAAAGTGGATCAAGCGTCCCTCATTGCATGCCC
GTACCTTTCTTGCACTCCTTCCCATCTATGCCTCGGAATCCATCGCACGC
GCTTCTGAAGCCCAGTTACTCAGCTTCCCTCCTTGTGTCTCTCACTCGCT
CACAGAGATTCATGAACTCCCGCTTATTTGCTGTCAGCGCATGCAGGAGA
GCTGTGAGTGCTAGGCAGCGGCAGCCCACTTCAACAGTATCTCGGATCGC
CCTCCGCGGTTTAGCTTCGTCCAAACATCCTCCTTCCTCTCCTCCCCCCC
CCCAAGGCATGGGTGCCAACGGTCTGATCGGCCTCCCTCCAAACCCCCGC
CCACCGCCCTCTCGCAAACCATCGCAGCCGACACCGACTCCCGCAACTGC
GCGCATGCCCTCTGTGATTGAAGTGGACGTTAAGAACTTCGTGGCCTTGC
TCAAGTCCCCTGTCCCCGTCATCCTCGATTGCTACGCAAGCTGGTGCGAC
CCGTGCAAAAAACTGACGCCCGTGCTTGAACGCATCGTCGGCAAGTACCC
GGGGAGGCTAATATTGGCCAAGCTCGACGTGGACAACCACCAGGAGCTGG
CGGCTCAATTGAACGTGAGCTCCCTCCCAGCCGTCTTCGGCCTGTGCGAA
GGGAAACTTGTGGACCGATTCGTGGGGATGCCCACCGAGCCAGTGCTGGC
TGGGTTCTTGGACAAAATGCTCTCGATCATCCCGACCTCCTCGGGGCAGG
AAGGGAAGGGCGAGCCATCCCCGGCGGAGAAACAGGAGGCGGTGTTGAAG
CGGGCGGATGCGCTGCTGACCGAGGGGACAAAGGAGGGGGGAAGCGGGGA
GACGGCGACAGAGGCAGGCGCACTCTACCGCCAAGTGTACGAAGAGCTGG
GGAAGGAGGATACGCCGGCCACCTATCTGCAAGCGAGGTGCCTGGCAGGG
TTGGCGCGGTGTGCATTGCGGGGAGGGGCGAGGGAGGAGGCCAAGGAGTT
GGTGGGCATGCTCAAGAGGCAGCACAAGGCGGATATGGAGACGATGCCGG
TAAGGAAGAGGGGGAGGAAGTGGGGGAGGGAGGGCTGGGTGGGAAGGAAT
CTTTGCGGGAATCATTCAAGGCAGCCCCTGCCCCGCAGGAGGTCCGGGCG
GCCGTCTCCTTCGTCGAAGTGGCCTTAGAGGCTCCTGCGGAGGAAGACGG
GGCGTCCCTTGAAGACACCTTAACAAAGCTTCAAGGTAGCGTCATGGCCA
ATCCTGGTGACTTGGAAGCACGCTACAACTTGGCTTTGAAGAACTTTCAG
CTGCAGCGCTTTGAAACCTCCATCGACGCCTGTTTGGAGATTTTGAAACG
GGACAAGGCCTGGAAGGAGGGGGCGGCCCAGGCACTCTTGCTCAAGACCT
TCGAGGCTCTGGGTCCGGAGAGCGACCTGACCAGGAGAGGGCGCCAGCGC
ATGACCAACTACCTCTTTCTCTAGGATATTCGCAGGCATTTTCAAAAATA
TCCGCGTCGCTGGGCCCTTGTGTCCCTCCTCCTTCCCCTCCACCCCTTCC
TGCGTCTCCTCCCTCTTTTCTCCCTCCTTTTTGTCTTCCTCCTCTTTGGC
ACCGGAAGTCCCCGGGCCGGTAGTAGACCCTCCCGTGGGCTCGCGAGGGG
GACGGTCGGAGTCTGGTAGGGAATTCTCCATAGAGTGAACGGGCAACACC
TGGGCGAGGCTGATCGCGTAATGGCTCCTCAGAAAGCAAGAAATGTCGCT
TGTGCATGCCAGCAGAAGAATGAGATGCATTGTTGTTGTGGCCGGTGTAC
TCCGGTAGCCCCAGTTTCCCCCCCCGCCCTCCTTCCTGTCCTCGTTTCCC
CCCTGCTTAAGCCTTCTCCTCACTCCCTCCTCCCGGTCGCACCCGCTTTC
TCCCCGGGAACCGGCTCGCGGCCTGAGACATTGATAACATCTCCCTCTCC
CCTCGTGCCTCCCGCCCGGTTCATGTCGGCCTTCGAGAAGAGGATGACCA
TTTAGACACCCAACACGCCGGTCTGACTGTCCCTTGCACTGCCACATTCC
GGCACTTCACAGGACTTTTCGCACCCCAACCCGCCTTCGTGCGCACCCCT
CGTTGCCTTCCCTCCCTGCCTCGTCCTTGCCCGGGGGCATGTCGCTCAAT
CACCACACAGCAGAAGCCATCGTCCGGCTCCTAGGCCTCCAACCTCACCC
TGAGGGCGGATTTTTCAAGGAAACCTACCGCAGTGGCGCCTGTCCAGGGG
CTTCTCAAGGACTCACTGACACAAGCGGCACCCTCCTTCCCTCCTCACCC
TCTCCCGCCTCCTCTCTCCCGTCCTCCCCCCGCAACATCTGCACCTCGAT
CTTCTACCTCCTGACCACCGAGGCACCCGTTGGGTTTTGGCACAAAAACC
GCTCAAACATCGTCCACTACTATCAAGGGGGCGATCCCCTCGCCTACTAC
CTCCTCCCCCCATCCACCGGACGCCTGGAAAGACATGTCCTGGGGCCCGA
CCTGGCCCACGGGCACACGCTGCAGTTGATCGTCGAAGGGGGAGTGTGGA
AGGCGACCGTCCTGGAGGGGGGTTCGGTGGGATGGGGTCTGCTGGGGGAA
GCTGTGGCGCCGGGCTTCGACTACAGGGACATGACGTTTGGGAACGAGGA
CGACATGGCCAAAGAGTACCCGAAACTGGTGGAGAAGCTTCGGCCTTTTT
TCAAGCCCAAAAAGGTGGGAGAGTAGGGAAAGGATGCGAACACGTGATAG
GGGAGGGAGTGACAGGTGATGTCGCTGCGGTTGCTTGTTCGTTCTTTTGG
GGCCGGTAGGTCCTCTTGCAAGGAAAGGAATGACGTGGACAACGGGGCGG
CTATGCTAAATCGACGTGAGTACGGTACACTAAAGATGTAGTGGGAAAGT
CGGGAATTCGGCGCTTTAAGAACAGCTAGTGATTTCTTCGGTCACCCCCC
CACACATTTGATGCACAAGACAAAAATCAAGCTTTGGAATAATAGGAAAT
AGGCGGCTTGTATGCGGAAAGGGTCGAGCCTCGGTCATATTTTGTTTTTC
TCGTTCAAACAAATGCGCTTTACCGCCTGTGTCCACGTG

protein sequence of rna8968

>rna8968-protein ID=rna8968-protein|Name=rna8968|organism=Nannochloropsis gaditana|type=polypeptide|length=589bp
MRVLFPFFWAFLATCAALNDTIVDVQEERDDILSLRPLFRAWMKHHNISI
PPSKIAHRLRIFAANHAFILSHNAQQHPRPSYTLGHNRFSHLTFDEFRAM
HLGFTRPTTAFPPSFEEDETPQNDALATSRSLRGHLSTTDKNHAIGMNTE
RFPPYTFPRPAWLPHIENPSSSLPPSIDWVEKGAVTPVKDQGQCGSCYSF
SAVGAVEGAYYLQTGVLSEFSMQEIVDCDGLDGGCQGGEMQQTFKWMQMN
GGLCLLSDYPYVSGTTAEEQAVCLPCPVVPGTAPEKWITVRRNSMTELQE
AVAAQPVSVAVGASRAWMFYEAGVFDGKCEQELNHGVLCVGYGGGEGSEE
GQYWKVKNSWGPEWGMEGYILLKRDDFDKQAACGIMEDASYPILPSVPGM
TGNEPARPPVISQAGRSSGSTAGLNPLQGSATARDCGGSTAIFSNVRISP
DAVEKNELVTVMAEGTLTKPTLSGRYTLSVVYEGAQLYSHAGDVCGNETV
ALPLNAGTVHVFGFACPANPGPVSYGLDVILPSIAPSGEYLISIKGHDQD
NAQLVCIEADLKLKRRHAQGVNNSKMLCEHGTFPGKTVT

mRNA from alignment at KK037250.1:600034..601849+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8968 ID=rna8968|Name=rna8968|organism=Nannochloropsis gaditana|type=mRNA|length=1816bp|location=Sequence derived from alignment at KK037250.1:600034..601849+ (Nannochloropsis gaditana)
ATgcgcgtcctcttccccttcttttgggCCTTTCTTGCCACATGTGCAGC
CTTGAACGACACAATTGTCGATGTCCAAGAGGAACGTGATGACATCTTGT
CCTTgcggcccctcttccgcgcCTGGATGAAACATCACAACATCAGTATT
CCTCCCTCTAAAATTGCCCATCGACTTCGGATTTTCGCCGCCAACCATGC
CTTCATTCTGTCCCACAATGCCCAACAACACCCTCGTCCATCATATACAT
TGGGGCACAACCGTTTTTCGCATTTAACTTTCGACGAATTCCGAGCCATG
CACCTCGGCTTTACCCGCCCCACCACAgcgtttcccccctcttttgaGGA
AGACGAGACGCCGCAGAACGATGCGCTCGCCACAAGTCGATCATTGCGCG
GTCATCTTTCAACGACCGACAAAAATCATGCCATTGGAATGAACACTGAA
CGGTTTCCTCCTTACAccttccctcgcccagccTGGCTTCCCCACATCGA
Gaacccttcttcctctctccctccctccattgactgggtggagaaggggg
ccgtCACGCCCGTTAAGGACCAAGGGCAGTGTGGATCCTGCTACTCCTTT
TCCGCGgtcggggccgtggagggggcgtACTATTTGCAGACGGGCGTCTT
GTCCGAGTTCTCCATGCAAGAAATCGTGGACTGCGACGGCTTGGACGGGG
GCTGTCAGGGTGGGGAGATGCAACAGACGTTCAAATGGATGCAAATGAAC
GGAGGTCTGTGCTTGCTCTCGGACTACCCCTACGTGAGCGGCACCACTGC
GGAGGAACAGGCCGTCTGCCTTCCTTGCCCAGTCGTGCCAGGCACGGCCC
CCGAGAAATGGATTACGGTGCGCCGCAACTCTATGACCGAGCTCCaagag
gccgtggccgcaCAGCCTGTTTCCGTGGCTGTAGGTGCAAGCCGCGCCTG
GATGTTTTACGAGGCCGGTGTCTTCGATGGGAAGTGCGAGCAGGAACTGA
ACCATGGGGTGCTGTGCGTCGGGtacggcgggggagagggaagtgaAGAG
GGGCAGTATTGGAAGGTCAAGAACAGCTGGGGCCCAGAgtgggggatgga
gggctaCATTCTCCTAAAGCGCGATGATTTCGACAAGCAAGCTGCGTGTG
GGATCATGGAAGACGCTTCTTACCCGATCCTGCCCTCTGTTCCCGGGATG
ACTGGAAACgagcccgcccgcccccccgtcaTCTCGCAAGCAGGCCGCAG
TAGCGGGAGTACCGCGGGGTTGAATCCCTTGCAGGGTTCTGCCACAGCCC
GGGACTGCGGGGGTAGCACGGCCATTTTTTCGAACGTCCGCATTTCCCCg
gacgcggtggagaagAACGAGCTGGTGACGGTGATGGCCGAAGGGACCTT
GACGAAACCCACCTTGAGCGGGAGGTATACCCTCTCTGTGGTCTACGAGG
GCGCCCAGCTGTACTCCCATGCCGGCGACGTGTGCGGGAACGAGACGGTC
GCCCTGCCTTTGAACGCAGGCACGGTCCACGTCTTTGGCTTCGCCTGTCC
CGCGAACCCGGGCCCCGTCTCCTACGGACTGGACGTGATTTTGCCTTCGA
TTGCACCCTCGGGGGAGTACCTGATCTCCATCAAGGGCCACGATCAGGAC
AATGCCCAGCTTGTCTGTATAGAGGCCGACTTGAAATTGTGAGGTGTGTC
GGGCACGCATCGTCCGGCCCGTGTAGAATCGCAGAAAACGGAGGCACGCA
CAAGGTGTGAATAATAGCAAGATGCTTTGTGAGCATGGTACTTTCCCCGG
AAAAACGGTGACGTGA

Coding sequence (CDS) from alignment at KK037250.1:600034..601849+

>rna8968 ID=rna8968|Name=rna8968|organism=Nannochloropsis gaditana|type=CDS|length=3540bp|location=Sequence derived from alignment at KK037250.1:600034..601849+ (Nannochloropsis gaditana)
ATgcgcgtcctcttccccttcttttgggCCTTTCTTGCCACATGTGCAGC
CTTGAACGACACAATTGTCGATGTCCAAGAGGAACGTGATGACATCTTGT
CCTTgcggcccctcttccgcgcCTGGATGAAACATCACAACATCAGTATT
CCTCCCTCTAAAATTGCCCATCGACTTCGGATTTTCGCCGCCAACCATGC
CTTCATTCTGTCCCACAATGCCCAACAACACCCTCGTCCATCATATACAT
TGGGGCACAACCGTTTTTCGCATTTAACTTTCGACGAATTCCGAGCCATG
CACCTCGGCTTTACCCGCCCCACCACAgcgtttcccccctcttttgaGGA
AGACGAGACGCCGCAGAACGATGCGCTCGCCACAAGTCGATCATTGCGCG
GTCATCTTTCAACGACCGACAAAAATCATGCCATTGGAATGAACACTGAA
CGGTTTCCTCCTTACAccttccctcgcccagccTGGCTTCCCCACATCGA
Gaacccttcttcctctctccctccctccattgactgggtggagaaggggg
ccgtCACGCCCGTTAAGGACCAAGGGCAGTGTGGATCCTGCTACTCCTTT
TCCGCGgtcggggccgtggagggggcgtACTATTTGCAGACGGGCGTCTT
GTCCGAGTTCTCCATGCAAGAAATCGTGGACTGCGACGGCTTGGACGGGG
GCTGTCAGGGTGGGGAGATGCAACAGACGTTCAAATGGATGCAAATGAAC
GGAGGTCTGTGCTTGCTCTCGGACTACCCCTACGTGAGCGGCACCACTGC
GGAGGAACAGGCCGTCTGCCTTCCTTGCCCAGTCGTGCCAGGCACGGCCC
CCGAGAAATGGATTACGGTGCGCCGCAACTCTATGACCGAGCTCCaagag
gccgtggccgcaCAGCCTGTTTCCGTGGCTGTAGGTGCAAGCCGCGCCTG
GATGTTTTACGAGGCCGGTGTCTTCGATGGGAAGTGCGAGCAGGAACTGA
ACCATGGGGTGCTGTGCGTCGGGtacggcgggggagagggaagtgaAGAG
GGGCAGTATTGGAAGGTCAAGAACAGCTGGGGCCCAGAgtgggggatgga
gggctaCATTCTCCTAAAGCGCGATGATTTCGACAAGCAAGCTGCGTGTG
GGATCATGGAAGACGCTTCTTACCCGATCCTGCCCTCTGTTCCCGGGATG
ACTGGAAACgagcccgcccgcccccccgtcaTCTCGCAAGCAGGCCGCAG
TAGCGGGAGTACCGCGGGGTTGAATCCCTTGCAGGGTTCTGCCACAGCCC
GGGACTGCGGGGGTAGCACGGCCATTTTTTCGAACGTCCGCATTTCCCCg
gacgcggtggagaagAACGAGCTGGTGACGGTGATGGCCGAAGGGACCTT
GACGAAACCCACCTTGAGCGGGAGGTATACCCTCTCTGTGGTCTACGAGG
GCGCCCAGCTGTACTCCCATGCCGGCGACGTGTGCGGGAACGAGACGGTC
GCCCTGCCTTTGAACGCAGGCACGGTCCACGTCTTTGGCTTCGCCTGTCC
CGCGAACCCGGGCCCCGTCTCCTACGGACTGGACGTGATTTTGCCTTCGA
TTGCACCCTCGGGGGAGTACCTGATCTCCATCAAGGGCCACGATCAGGAC
AATGCCCAGCTTGTCTGTATAGAGGCCGACTTGAAATTAAAACGGAGGCA
CGCACAAGGTGTGAATAATAGCAAGATGCTTTGTGAGCATGGTACTTTCC
CCGGAAAAACGGTGACGTGAATgcgcgtcctcttccccttcttttgggCC
TTTCTTGCCACATGTGCAGCCTTGAACGACACAATTGTCGATGTCCAAGA
GGAACGTGATGACATCTTGTCCTTgcggcccctcttccgcgcCTGGATGA
AACATCACAACATCAGTATTCCTCCCTCTAAAATTGCCCATCGACTTCGG
ATTTTCGCCGCCAACCATGCCTTCATTCTGTCCCACAATGCCCAACAACA
CCCTCGTCCATCATATACATTGGGGCACAACCGTTTTTCGCATTTAACTT
TCGACGAATTCCGAGCCATGCACCTCGGCTTTACCCGCCCCACCACAgcg
tttcccccctcttttgaGGAAGACGAGACGCCGCAGAACGATGCGCTCGC
CACAAGTCGATCATTGCGCGGTCATCTTTCAACGACCGACAAAAATCATG
CCATTGGAATGAACACTGAACGGTTTCCTCCTTACAccttccctcgccca
gccTGGCTTCCCCACATCGAGaacccttcttcctctctccctccctccat
tgactgggtggagaagggggccgtCACGCCCGTTAAGGACCAAGGGCAGT
GTGGATCCTGCTACTCCTTTTCCGCGgtcggggccgtggagggggcgtAC
TATTTGCAGACGGGCGTCTTGTCCGAGTTCTCCATGCAAGAAATCGTGGA
CTGCGACGGCTTGGACGGGGGCTGTCAGGGTGGGGAGATGCAACAGACGT
TCAAATGGATGCAAATGAACGGAGGTCTGTGCTTGCTCTCGGACTACCCC
TACGTGAGCGGCACCACTGCGGAGGAACAGGCCGTCTGCCTTCCTTGCCC
AGTCGTGCCAGGCACGGCCCCCGAGAAATGGATTACGGTGCGCCGCAACT
CTATGACCGAGCTCCaagaggccgtggccgcaCAGCCTGTTTCCGTGGCT
GTAGGTGCAAGCCGCGCCTGGATGTTTTACGAGGCCGGTGTCTTCGATGG
GAAGTGCGAGCAGGAACTGAACCATGGGGTGCTGTGCGTCGGGtacggcg
ggggagagggaagtgaAGAGGGGCAGTATTGGAAGGTCAAGAACAGCTGG
GGCCCAGAgtgggggatggagggctaCATTCTCCTAAAGCGCGATGATTT
CGACAAGCAAGCTGCGTGTGGGATCATGGAAGACGCTTCTTACCCGATCC
TGCCCTCTGTTCCCGGGATGACTGGAAACgagcccgcccgcccccccgtc
aTCTCGCAAGCAGGCCGCAGTAGCGGGAGTACCGCGGGGTTGAATCCCTT
GCAGGGTTCTGCCACAGCCCGGGACTGCGGGGGTAGCACGGCCATTTTTT
CGAACGTCCGCATTTCCCCggacgcggtggagaagAACGAGCTGGTGACG
GTGATGGCCGAAGGGACCTTGACGAAACCCACCTTGAGCGGGAGGTATAC
CCTCTCTGTGGTCTACGAGGGCGCCCAGCTGTACTCCCATGCCGGCGACG
TGTGCGGGAACGAGACGGTCGCCCTGCCTTTGAACGCAGGCACGGTCCAC
GTCTTTGGCTTCGCCTGTCCCGCGAACCCGGGCCCCGTCTCCTACGGACT
GGACGTGATTTTGCCTTCGATTGCACCCTCGGGGGAGTACCTGATCTCCA
TCAAGGGCCACGATCAGGACAATGCCCAGCTTGTCTGTATAGAGGCCGAC
TTGAAATTAAAACGGAGGCACGCACAAGGTGTGAATAATAGCAAGATGCT
TTGTGAGCATGGTACTTTCCCCGGAAAAACGGTGACGTGA

Synonyms

Publications