rna8967, rna8967 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8967
Unique Name	rna8967
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3614
Alignment location	KK037250.1:594367..598134 +

Link to JBrowse

Properties


Property Name	Value
Product	thioredoxin
Orig transcript id	gnl\|cribi\|Naga_100270g7.5534.mrna
Orig protein id	gnl\|cribi\|Naga_100270g7.5534
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:594367..598134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100270g7	gene8692	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8967	rna8967-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21739.1	cds8937	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:594367..598134+
coding sequence from alignment at KK037250.1:594367..598134+

mRNA sequence

>rna8967 ID=rna8967|Name=rna8967|organism=Nannochloropsis gaditana|type=mRNA|length=3614bp
AAGGCTCGCGTGAAAACAGGCTCATGGTGAGGGATTTGGAGATGCTTAGT
TGCCTTTCTAGTCGTCAAAGTGCTGCATGGGACCATGCCATTTCCAAACT
ACGTGCCATCACAGTAGAAGCTTCTAGGATCATCGGTGTCTTCCCTCGCT
TCATCGCTGGGCTTGCGACATCAGCACATCGTGCGCCTTCCTAACTAATA
TTTGCGTTAGATTGTTCCTTGTGTCCATGGTGACCTGTTTGGTTCGAGTG
GACTGTGCATAGACGGGGAAAGTGGATCAAGCGTCCCTCATTGCATGCCC
GTACCTTTCTTGCACTCCTTCCCATCTATGCCTCGGAATCCATCGCACGC
GCTTCTGAAGCCCAGTTACTCAGCTTCCCTCCTTGTGTCTCTCACTCGCT
CACAGAGATTCATGAACTCCCGCTTATTTGCTGTCAGCGCATGCAGGAGA
GCTGTGAGTGCTAGGCAGCGGCAGCCCACTTCAACAGTATCTCGGATCGC
CCTCCGCGGTTTAGCTTCGTCCAAACATCCTCCTTCCTCTCCTCCCCCCC
CCCAAGGCATGGGTGCCAACGGTCTGATCGGCCTCCCTCCAAACCCCCGC
CCACCGCCCTCTCGCAAACCATCGCAGCCGACACCGACTCCCGCAACTGC
GCGCATGCCCTCTGTGATTGAAGTGGACGTTAAGAACTTCGTGGCCTTGC
TCAAGTCCCCTGTCCCCGTCATCCTCGATTGCTACGCAAGCTGGTGCGAC
CCGTGCAAAAAACTGACGCCCGTGCTTGAACGCATCGTCGGCAAGTACCC
GGGGAGGCTAATATTGGCCAAGCTCGACGTGGACAACCACCAGGAGCTGG
CGGCTCAATTGAACGTGAGCTCCCTCCCAGCCGTCTTCGGCCTGTGCGAA
GGGAAACTTGTGGACCGATTCGTGGGGATGCCCACCGAGCCAGTGCTGGC
TGGGTTCTTGGACAAAATGCTCTCGATCATCCCGACCTCCTCGGGGCAGG
AAGGGAAGGGCGAGCCATCCCCGGCGGAGAAACAGGAGGCGGTGTTGAAG
CGGGCGGATGCGCTGCTGACCGAGGGGACAAAGGAGGGGGGAAGCGGGGA
GACGGCGACAGAGGCAGGCGCACTCTACCGCCAAGTGTACGAAGAGCTGG
GGAAGGAGGATACGCCGGCCACCTATCTGCAAGCGAGGTGCCTGGCAGGG
TTGGCGCGGTGTGCATTGCGGGGAGGGGCGAGGGAGGAGGCCAAGGAGTT
GGTGGGCATGCTCAAGAGGCAGCACAAGGCGGATATGGAGACGATGCCGG
TAAGGAAGAGGGGGAGGAAGTGGGGGAGGGAGGGCTGGGTGGGAAGGAAT
CTTTGCGGGAATCATTCAAGGCAGCCCCTGCCCCGCAGGAGGTCCGGGCG
GCCGTCTCCTTCGTCGAAGTGGCCTTAGAGGCTCCTGCGGAGGAAGACGG
GGCGTCCCTTGAAGACACCTTAACAAAGCTTCAAGGTAGCGTCATGGCCA
ATCCTGGTGACTTGGAAGCACGCTACAACTTGGCTTTGAAGAACTTTCAG
CTGCAGCGCTTTGAAACCTCCATCGACGCCTGTTTGGAGGTAAGGGGGGG
GGAAGGCGGGAAGGATGGAGGGAGAGAGAAAGGAAGTGGAAAGAAGCAAG
AATGAAGGATCGAGAGGATGGAAAAAGAAGCCCAAAAGAAAGAAAGGGCG
AGGGTGAAAGTCGCCAGGGTAAGAGAGGAGTGAGAGCTGTGTAGGAGATA
GGGAGGAGAGGGCAGGACGGGACCCTGCCAGCTCTTCTTTTTTTAAAAAT
ATACCCGGCTTACCAACGACCCCCGCCTGTGCCCTCGGCCTTTCCTTCCC
ATTCTTCCCCGCAGATTTTGAAACGGGACAAGGCCTGGAAGGAGGGGGCG
GCCCAGGCACTCTTGCTCAAGACCTTCGAGGCTCTGGGTCCGGAGAGCGA
CCTGACCAGGAGAGGGCGCCAGCGCATGACCAACTACCTCTTTCTCTAGG
ATATTCGCAGGCATTTTCAAAAATATCCGCGTCGCTGGGCCCTTGTGTCC
CTCCTCCTTCCCCTCCACCCCTTCCTGCGTCTCCTCCCTCTTTTCTCCCT
CCTTTTTGTCTTCCTCCTCTTTGGCACCGGAAGTCCCCGGGCCGGTAGTA
GACCCTCCCGTGGGCTCGCGAGGGGGACGGTCGGAGTCTGGTAGGGAATT
CTCCATAGAGTGAACGGGCAACACCTGGGCGAGGCTGATCGCGTAATGGC
TCCTCAGAAAGCAAGAAATGTCGCTTGTGCATGCCAGCAGAAGAATGAGA
TGCATTGTTGTTGTGGCCGGTGTACTCCGGTAGCCCCAGTTTCCCCCCCC
GCCCTCCTTCCTGTCCTCGTTTCCCCCCTGCTTAAGCCTTCTCCTCACTC
CCTCCTCCCGGTCGCACCCGCTTTCTCCCCGGGAACCGGCTCGCGGCCTG
AGACATTGATAACATCTCCCTCTCCCCTCGTGCCTCCCGCCCGGTTCATG
TCGGCCTTCGAGAAGAGGATGACCATTTAGACACCCAACACGCCGGTCTG
ACTGTCCCTTGCACTGCCACATTCCGGCACTTCACAGGACTTTTCGCACC
CCAACCCGCCTTCGTGCGCACCCCTCGTTGCCTTCCCTCCCTGCCTCGTC
CTTGCCCGGGGGCATGTCGCTCAATCACCACACAGCAGAAGCCATCGTCC
GGCTCCTAGGCCTCCAACCTCACCCTGAGGGCGGATTTTTCAAGGAAACC
TACCGCAGTGGCGCCTGTCCAGGGGCTTCTCAAGGACTCACTGACACAAG
CGGCACCCTCCTTCCCTCCTCACCCTCTCCCGCCTCCTCTCTCCCGTCCT
CCCCCCGCAACATCTGCACCTCGATCTTCTACCTCCTGACCACCGAGGCA
CCCGTTGGGTTTTGGCACAAAAACCGCTCAAACATCGTCCACTACTATCA
AGGGGGCGATCCCCTCGCCTACTACCTCCTCCCCCCATCCACCGGACGCC
TGGAAAGACATGTCCTGGGGCCCGACCTGGCCCACGGGCACACGCTGCAG
TTGATCGTCGAAGGGGGAGTGTGGAAGGCGACCGTCCTGGAGGGGGGTTC
GGTGGGATGGGGTCTGCTGGGGGAAGCTGTGGCGCCGGGCTTCGACTACA
GGGACATGACGTTTGGGAACGAGGACGACATGGCCAAAGAGTACCCGAAA
CTGGTGGAGAAGCTTCGGCCTTTTTTCAAGCCCAAAAAGGTGGGAGAGTA
GGGAAAGGATGCGAACACGTGATAGGGGAGGGAGTGACAGGTGATGTCGC
TGCGGTTGCTTGTTCGTTCTTTTGGGGCCGGTAGGTCCTCTTGCAAGGAA
AGGAATGACGTGGACAACGGGGCGGCTATGCTAAATCGACGTGAGTACGG
TACACTAAAGATGTAGTGGGAAAGTCGGGAATTCGGCGCTTTAAGAACAG
CTAGTGATTTCTTCGGTCACCCCCCCACACATTTGATGCACAAGACAAAA
ATCAAGCTTTGGAATAATAGGAAATAGGCGGCTTGTATGCGGAAAGGGTC
GAGCCTCGGTCATATTTTGTTTTTCTCGTTCAAACAAATGCGCTTTACCG
CCTGTGTCCACGTG

protein sequence of rna8967

>rna8967-protein ID=rna8967-protein|Name=rna8967|organism=Nannochloropsis gaditana|type=polypeptide|length=377bp
MPVPFLHSFPSMPRNPSHALLKPSYSASLLVSLTRSQRFMNSRLFAVSAC
RRAVSARQRQPTSTVSRIALRGLASSKHPPSSPPPPQGMGANGLIGLPPN
PRPPPSRKPSQPTPTPATARMPSVIEVDVKNFVALLKSPVPVILDCYASW
CDPCKKLTPVLERIVGKYPGRLILAKLDVDNHQELAAQLNVSSLPAVFGL
CEGKLVDRFVGMPTEPVLAGFLDKMLSIIPTSSGQEGKGEPSPAEKQEAV
LKRADALLTEGTKEGGSGETATEAGALYRQVYEELGKEDTPATYLQARCL
AGLARCALRGGAREEAKELVGMLKRQHKADMETMPVRKRGRKWGREGWVG
RNLCGNHSRQPLPRRRSGRPSPSSKWP

mRNA from alignment at KK037250.1:594367..598134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8967 ID=rna8967|Name=rna8967|organism=Nannochloropsis gaditana|type=mRNA|length=3768bp|location=Sequence derived from alignment at KK037250.1:594367..598134+ (Nannochloropsis gaditana)
AAGGCTCGCGTGAAAACAGGCTCATGGTGAGGGATTTGGAGATGCTTAGT
TGCCTTTCTAGTCGTCAAAGTGCTGCATGGGACCATGCCATTTCCAAACT
ACGTGCCATCACAGTAGAAGCTTCTAGGATCATCGGTGTCTTCCCTCGCT
TCATCGCTGGGCTTGCGACATCAGCACATCGTGCGCCTTCCTAACTAATA
TTTGCGTTAGATTGTTCCTTGTGTCCATGGTGACCTGTTTGGTTCGAGTG
GACTGTGCATAGACGGGGAAAGTGGATCAAGCGTCCCTCATTGCATGCCC
GTACCTTTCTTGCACTCCTTCCCATCTATGCCTCGGAATCCATCGCACGC
GCTTCTGAAGCCCAGTTACtcagcttccctccttgtgtcTCTCACTCGCT
CACAGAGATTCATGAACTCCCGCTTATTTGCTGTCAGCGCATGCAGGAGA
GCTGTGAGTGCTAGGCAGCGGCAGCCCACTTCAACAGTATCTCGGATCGC
CCTCCGCGGTTTAGCTTCGTCCAaacatcctccttcctctcctccccccc
cccaaggcaTGGGTGCCAACGGTCTGatcggcctccctccaaacccccgc
ccaccgccctcTCGCAAACCATCGCAGCCGACACCGACTCCCGCAACTGC
GCGCATGCCCTCTGTGATTGAAGTGGACGTTAAGAACTTCGTGGCCTTGC
TCAAGTCCCCTGTCCCCGTCATCCTCGATTGCTACGCAAGCTGGTGCGAC
CCGTGCAAAAAACTGACGCCCGTGCTTGAACGCATCGTCGGCAAGTACCC
GGGGAGGCTAATATTGGCCAAGCTCGACGTGGACAACCACCAGGAGCTGG
CGGCTCAATTGAACGTGAgctccctcccagccgtCTTCGGCCTGTGCGAA
GGGAAACTTGTGGACCGATTCGTGGGGATGCCCACCGAGCCAGTGCTGGC
TGGGTTCTTGGACAAAATGCTCTCGATCATCCCGACCTCctcggggcagg
aagggaagggcgagcCATCCCCGGCGGAGAAACAGGAGGCGGTGTTGAAG
CGGGCGGATGCGCTGCTGACCGAGGggacaaaggaggggggaagcgggga
gaCGGCGACAGAGGCAGGCGCACTCTACCGCCAAGTGTACGAAGagctgg
ggaaggaggatacGCCGGCCACCTATCTGCAAGCGAGGTGCCTGGCAGGG
TTGGCGCGGTGTGCattgcggggaggggcgagggaggaggccaaggagtT
GGTGGGCATGCTCAAGAGGCAGCACAAGGCGGATATGGAGACGATGCCgg
taaggaagagggggaggaagtgggggagggagggctgggtgGGAAGGAAT
CTTTGCGGGAATCATTCAAGGCAGCCCCTGCCCCGCAGGAGGTCCGGGCG
GCCGTCTCCTTCGTCGAAGTGGCCTTAGAGGCTcctgcggaggaagacgg
ggcgtCCCTTGAAGACACCTTAACAAAGCTTCAAGGTAGCGTCATGGCCA
ATCCTGGTGACTTGGAAGCACGCTACAACTTGGCTTTGAAGAACTTTCAG
CTGCAGCGCTTTGAAACCTCCATCGACGCCTGTTTGGaggtaaggggggg
ggaaggcgggaaggatggagggagagagaaaggaagtggAAAGAAGCAAG
AATGAAGGATCgagaggatggaaaaagaagcccaaaagaaagaaagggcg
AGGGTGAAAGTCGCCAGGGTAAGAGAGGAGTGAGAGCTGTGTAGGAgata
gggaggagagggcaggacGGGACCCTGCcagctcttctttttttaaaaat
atACCCGGCTTACCAACGACCCCCGCCTGTGCCCTcggcctttccttccc
attctTCCCCGCAGATTTTGAAACGGGACAaggcctggaaggagggggcg
gcccAGGCACTCTTGCTCAAGACCTTCGAGGCTCTGGGTCCGGAGAGCGA
CCTGACCAGGAGAGGGCGCCAGCGCATGACCAACTACCTCTTTCTCTAGG
ATATTCGCAGGCATTTTCAAAAATATCCGCGTCGCTGGGCCCttgtgtcc
ctcctccttcccctccaccccttcctgcgtctcctccctcttttctccct
cctttttgtcttcctcctctttggcaCCGGAAGTCCCCGGGCCGGTAGTA
GACCCTCCCGTGGGCTCGCGAGGGGGACGGTCGGAGTCTGGTAGGGAATT
CTCCATAGAGTGAACGGGCAACACCTGGGCGAGGCTGATCGCGTAATGGC
TCCTCAGAAAGCAAGAAATGTCGCTTGTGCATGCCAGCAGAAGAATGAGA
TGCATTGTTGTTGTGGCCGGTGTACTCCGGTAGCCCCagtttcccccccc
gccctccttcctgtcctcgtttcccccctgcTTAAGCcttctcctcactc
cctcctcccggtcgcacccgctttctccccggGAACCGGCTCGCGGCCTG
AGACATTGATaacatctccctctcccctcgtgCCTCCCGCCCGGTTCATG
TCGGCCTtcgagaagaggatgaccaTTTAGACACCCAACACGCCGGTCTG
ACTGTCCCTTGCACTGCCACATTCCGGCACTTCACAGGACTTTTCGCACC
CCAACCCGCCTTCGTGCGCACCCCTCgttgccttccctccctgcctcgtc
cttgcCCGGGGGCATGTCGCTCAATCACCACACAGCAGAAGCCATCGTCC
GGCTCCTAGGCCTCCAACCTCgtaagaaggagggagagagggggggtaac
gtgcaagggaggggacgggacCCGACGTCCCTCGCGCTTCCAGGGTCCGT
CAAGTTCAACCCTCCGGGCTCTCCACGTCGCGATGTCCTGATGCCACCCT
TCTTtactttctcccctttcttcagACCCTGAGGGCGGATTTTTCAAGGA
AACCTACCGCAGTGGCGCCTGTCCAGGGGCTTCTCAAGGACTCACTGACA
CAAGcggcaccctccttccctcctcaccctctcccgcctcctctctcccg
tcctccccccgcaacATCTGCACCTCGATCTTCTACCTCCTGACCACCGA
GGCACCCGTTGGGTTTTGGCACAAAAACCGCTCAAACATCGTCCACTACT
ATCAAGGGGGCGATCCCCTCGCctactacctcctccccccatccacCGGA
CGCCTGGAAAGACATGTCCTGGGGCCCGACCTGGCCCACGGGCACACGCT
GCAGTTGATCGTCGAAGGGGGAGTGTGGAAGGCGACCGTCCTGGAGGGGG
GTTCGGTGGGATGGGGTCTGCTGGGGGAAGCTGTGGCGCCGGGCTTCGAC
TACAGGGACATGACGTTTGGGAACGAGGACGACATGGCCAAAGAGTACCC
GAAACTGGTGGAGAAGCTTCGGCCTTTTTTCAAGCCCAAAAAGGTGGGAG
AGTAGGGAAAGGATGCGAACACGTgataggggagggagtgacaGGTGATG
TCGCTGCGGTTGCTTGTTCGTTCTTTTGGGGCCGGTAGGTCCTCTtgcaa
ggaaaggaatgacGTGGACAACGGGGCGGCTATGCTAAATCGACGTGAGT
ACGGTACACTAAAGATGTAGTGGGAAAGTCGGGAATTCGGCGCTTTAAGA
ACAGCTAGTGATTTCTTCGGTCACCCCCCCACACATTTGATGCACAAGAC
AAAAATCAAGCTTTGGAATAATAGGAAATAGGCGGCTTGTATGCGGAAAG
GGTCGAGCCTCGGTCATATTTTGTTTTTCTCGTTCAAACAAATGCGCTTT
ACCGCCTGTGTCCACGTG

Coding sequence (CDS) from alignment at KK037250.1:594367..598134+

>rna8967 ID=rna8967|Name=rna8967|organism=Nannochloropsis gaditana|type=CDS|length=1134bp|location=Sequence derived from alignment at KK037250.1:594367..598134+ (Nannochloropsis gaditana)
ATGCCCGTACCTTTCTTGCACTCCTTCCCATCTATGCCTCGGAATCCATC
GCACGCGCTTCTGAAGCCCAGTTACtcagcttccctccttgtgtcTCTCA
CTCGCTCACAGAGATTCATGAACTCCCGCTTATTTGCTGTCAGCGCATGC
AGGAGAGCTGTGAGTGCTAGGCAGCGGCAGCCCACTTCAACAGTATCTCG
GATCGCCCTCCGCGGTTTAGCTTCGTCCAaacatcctccttcctctcctc
cccccccccaaggcaTGGGTGCCAACGGTCTGatcggcctccctccaaac
ccccgcccaccgccctcTCGCAAACCATCGCAGCCGACACCGACTCCCGC
AACTGCGCGCATGCCCTCTGTGATTGAAGTGGACGTTAAGAACTTCGTGG
CCTTGCTCAAGTCCCCTGTCCCCGTCATCCTCGATTGCTACGCAAGCTGG
TGCGACCCGTGCAAAAAACTGACGCCCGTGCTTGAACGCATCGTCGGCAA
GTACCCGGGGAGGCTAATATTGGCCAAGCTCGACGTGGACAACCACCAGG
AGCTGGCGGCTCAATTGAACGTGAgctccctcccagccgtCTTCGGCCTG
TGCGAAGGGAAACTTGTGGACCGATTCGTGGGGATGCCCACCGAGCCAGT
GCTGGCTGGGTTCTTGGACAAAATGCTCTCGATCATCCCGACCTCctcgg
ggcaggaagggaagggcgagcCATCCCCGGCGGAGAAACAGGAGGCGGTG
TTGAAGCGGGCGGATGCGCTGCTGACCGAGGggacaaaggaggggggaag
cggggagaCGGCGACAGAGGCAGGCGCACTCTACCGCCAAGTGTACGAAG
agctggggaaggaggatacGCCGGCCACCTATCTGCAAGCGAGGTGCCTG
GCAGGGTTGGCGCGGTGTGCattgcggggaggggcgagggaggaggccaa
ggagtTGGTGGGCATGCTCAAGAGGCAGCACAAGGCGGATATGGAGACGA
TGCCggtaaggaagagggggaggaagtgggggagggagggctgggtgGGA
AGGAATCTTTGCGGGAATCATTCAAGGCAGCCCCTGCCCCGCAGGAGGTC
CGGGCGGCCGTCTCCTTCGTCGAAGTGGCCTTAG

Synonyms

Publications