|
|
Properties
| Property Name | Value |
|---|
| Product | photosystem ii s4 domain protein |
| Orig transcript id | gnl|cribi|Naga_100303g8.777.mrna |
| Orig protein id | gnl|cribi|Naga_100303g8.777 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:578648..580473 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8960 ID=rna8960|Name=rna8960|organism=Nannochloropsis gaditana|type=mRNA|length=1408bp
TCGCTCTCGTAAAAGTTTTGGCCGGACAGCTATCAAAGACACGATAGTTT
ACCTCCCCATCCCCCTTTCCGCTAAACCACACAGGCAGTAGGCTTCTGCT
TTCTTTTTCGATCGGACGTCGAGAGATGTCAGAGCCCTATCATTGGTCAG
TCAGGAGAAGAGGGCCCTTAAACCATGTGAGACTCCTGCTCTTGGCCGTT
CTGGCAATCATGGTACCCGTGCCTGCGTTTGTCTCGATCTTTCCTGCTCC
GCCTCGGGCGCCGCGTCTACATGCTGGTGGCGGAGGCAACAGCGTAAATC
GGGAAGAATTGCGGAAAAGCCTGGTTGCCGAAGGCCTTGACGACATCTTG
GCGGCACGCGCCGTGGAGGCAGCGGACAAAGCCGTCAGCATCTGGGAAAT
GCAGGTGATAGACTTTTGTCGGCCCCCCGAGGTAGCGACCATGACCAGAG
TCCTTGGTCGGGTCGCCGACCTGTCTATCACCTGTGGCGGAGGCTTTCCC
CAAGCTGAACGGCAACGTGTATTTTTCTCTCGTGCGCTCGACTATGCAGT
GGACGAGGAAGACGCACGCAAGGAACGGGGAGGCTACCTAGCTGCCATTT
CCGTGGAAGGTAACTTTATTTTCGATCGGGCCACCCACCGGGATTTTCTG
GGCGCATTGCTGGGGACAGGCATAGCAAGGGAAAAGGTCGGAGACATATT
GCTCCAAGGCGAACGCGGCGCGCATGTGGTCGTGGCGCCTGACGTTGCCG
AATATGTGGTGCTCTCTCTGGCCGCGGTTCGAAGTGTGCCTGTCAAGAAC
AAGCCCATTGCCTTGGCTGACTTGGGAGTGCGGCCGCCCGTCACGAAGGA
GGTTCGTGTGGGAGTCAGGGAAAGAGGGCGGGGGGGAGGGAGGACGAGGA
GGGGTGAGAGGGGTAAAATCGATGAATATTGATGGTTATTGACTCAAAAG
TAGTGCTGTTGAATGAGAGATATGGTAGGACGGCCTCCCGAGCCCTTTAA
GCCTTGCCTTCTTATCCTCGTCACACCCTGACCTACCCGTGTAGATGCAA
TCTGTGGAGGCCTCCATGCGCCTGGACGCCGTCGCCAGCGCCGGGATGGG
GATGAGTCGGAGTAAATTGAAGGATATGATAGAAGGCGGAGACGTCCTAG
TCAACTGGAAAGAAATCACCTCTGCGAACGCGCAGCTCAAGGGCGGGGAC
ATTGTAACCATTCGGGGGAAGGGGCGTTTGGAAGTGAACGAGGTGGAGAC
GACAAGCAAAGGGAAGTTTCGTGTAAAGATGACGAAATTTGTCTAATTTT
GCGAGGAGTGCAGCATGAAAGAGGAGTTCATAAGAAGACTGGAACTGTGC
AAATTAAAGATTGAATGTGCCAGGACTCGAAAACTGAAAGCATAAACACT
GTTTAGCA back to topprotein sequence of rna8960 >rna8960-protein ID=rna8960-protein|Name=rna8960|organism=Nannochloropsis gaditana|type=polypeptide|length=240bp
MSEPYHWSVRRRGPLNHVRLLLLAVLAIMVPVPAFVSIFPAPPRAPRLHA
GGGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRP
PEVATMTRVLGRVADLSITCGGGFPQAERQRVFFSRALDYAVDEEDARKE
RGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVSSGRGSEKRAGE
EICRTDDWIGRACDGVGGACQVTQRIRHGARYIKHRPLVS back to topmRNA from alignment at KK037250.1:578648..580473- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna8960 ID=rna8960|Name=rna8960|organism=Nannochloropsis gaditana|type=mRNA|length=1826bp|location=Sequence derived from alignment at KK037250.1:578648..580473- (Nannochloropsis gaditana)
TCGCTCTCGTAAAAGTTTTGGCCGGACAGCTATCAAAGACACGATAGTTT
ACCTCCCCATCCCCCTTTCCGCTAAACCACACAGGCAGTAGGCTTCTGCT
TTCTTTTTCGATCGGACGTCGAGAGATGTCAGAGCCCTATCATTGGTCAG
TCAGGAGAAGAGGGCCCTTAAACCATGTGAGACTCCTGCTCTTGGCCGTT
CTGGCAATCATGGTACCCGTGCCTGCGTTTGTCTCGATCTTTCCTGCTCC
GCCTCGGGCGCCGCGTCTACATGCTGGTGGCGGAGGCAACAGCGTAAATC
GGGAAGAATTGCGGAAAAGCCTGGTTGCCGAAGGCCTTGACGACATCTTG
GCGGCACGCGCCGTGGAGGCAGCGGACAAAGCCGTCAGCATCTGGGAAAT
GCAGGTGATAGACTTTTGTCGGCCCCCCGAGGTAGCGACCATGACCAGAG
TCCTTGGTCGGGTCGCCGACCTGTCTATCACCTGTGGCGGAGGCTTTCCC
CAAGCTGAACGGCAACGTGTATTTTTCTCTCGTGCGCTCGACTATGCAGT
GGACGAGGAAGACGCACGCAAGGAACGGGGAGGCTACCTAGCTGCCATTT
CCGTGGAAGGTAACTTTATTTTCGATCGGGCCACCCACCGGGATTTTCTG
GGCGCATTGCTGGGGACAGGCATAGCAAGGGAAAAGGTAAGCTCTGGTCG
GGGCTCAGAAAAGCGTGCAGGAGAGGAGATTTGCCGGACAGATGATTGGA
TTGGAAGGGCTTGTGATGGGGTCGGAGGGGCTTGTCAAGTCACCCAACGG
ATAAGACATGGTGCCCGGTACATAAAGCACCGGCCCCTGGTGTCATAGGA
AGCCCCACGCCACGCCCCTGGGGTTGTCTAACTCCCGGCTTCCCGGCGCT
CGGCATGAACAGGTCGGAGACATATTGCTCCAAGGCGAACGCGGCGCGCA
TGTGGTCGTGGCGCCTGACGTTGCCGAATATGTGGTGCTCTCTCTGGCCG
CGGTTCGAAGTGTGCCTGTCAAGAACAAGCCCATTGCCTTGGCTGACTTG
GGAGTGCGGCCGCCCGTCACGAAGGAGGTTCGTGTGGGAGTCAGGGAAAG
AGGGCGGGGGGGAGGGAGGACGAGGAGGGGTGAGAGGGGTAAAATCGATG
AATATTGATGGTTATTGACTCAAAAGTAGTGCTGTTGAATGAGAGATATG
GTAGGACGGCCTCCCGAGCCCTTTAAGCCTTGCCTTCTTATCCTCGTCAC
ACCCTGACCTACCCGTGTAGATGCAATCTGTGGAGGCCTCCATGCGCCTG
GACGCCGTCGCCAGCGCCGGGATGGGGATGAGTCGGAGTAAATTGAAGGT
GATTGAGCCGCTGTTTGGAGGGGAGTGGGGGCGTTTCTCGTTTCGGTATC
AAGGAGCGAGTGCGCGTCGGCGGGAAGCACCTCAAACTGCGAGCACGCAT
TAGCTACCTACAGAGCGCGTGTGTGTGTAGTGTAGCAGGCCTGGACGCGC
TCTTATGTGTCCTTATCTTTCCTTTGTCCCCCCTCCTCAGGATATGATAG
AAGGCGGAGACGTCCTAGTCAACTGGAAAGAAATCACCTCTGCGAACGCG
CAGCTCAAGGGCGGGGACATTGTAACCATTCGGGGGAAGGGGCGTTTGGA
AGTGAACGAGGTGGAGACGACAAGCAAAGGGAAGTTTCGTGTAAAGATGA
CGAAATTTGTCTAATTTTGCGAGGAGTGCAGCATGAAAGAGGAGTTCATA
AGAAGACTGGAACTGTGCAAATTAAAGATTGAATGTGCCAGGACTCGAAA
ACTGAAAGCATAAACACTGTTTAGCA back to topCoding sequence (CDS) from alignment at KK037250.1:578648..580473- >rna8960 ID=rna8960|Name=rna8960|organism=Nannochloropsis gaditana|type=CDS|length=723bp|location=Sequence derived from alignment at KK037250.1:578648..580473- (Nannochloropsis gaditana)
ATGTCAGAGCCCTATCATTGGTCAGTCAGGAGAAGAGGGCCCTTAAACCA
TGTGAGACTCCTGCTCTTGGCCGTTCTGGCAATCATGGTACCCGTGCCTG
CGTTTGTCTCGATCTTTCCTGCTCCGCCTCGGGCGCCGCGTCTACATGCT
GGTGGCGGAGGCAACAGCGTAAATCGGGAAGAATTGCGGAAAAGCCTGGT
TGCCGAAGGCCTTGACGACATCTTGGCGGCACGCGCCGTGGAGGCAGCGG
ACAAAGCCGTCAGCATCTGGGAAATGCAGGTGATAGACTTTTGTCGGCCC
CCCGAGGTAGCGACCATGACCAGAGTCCTTGGTCGGGTCGCCGACCTGTC
TATCACCTGTGGCGGAGGCTTTCCCCAAGCTGAACGGCAACGTGTATTTT
TCTCTCGTGCGCTCGACTATGCAGTGGACGAGGAAGACGCACGCAAGGAA
CGGGGAGGCTACCTAGCTGCCATTTCCGTGGAAGGTAACTTTATTTTCGA
TCGGGCCACCCACCGGGATTTTCTGGGCGCATTGCTGGGGACAGGCATAG
CAAGGGAAAAGGTAAGCTCTGGTCGGGGCTCAGAAAAGCGTGCAGGAGAG
GAGATTTGCCGGACAGATGATTGGATTGGAAGGGCTTGTGATGGGGTCGG
AGGGGCTTGTCAAGTCACCCAACGGATAAGACATGGTGCCCGGTACATAA
AGCACCGGCCCCTGGTGTCATAG back to top
|