rna896, rna896 (mRNA) Nannochloropsis gaditana

Overview
Namerna896
Unique Namerna896
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1619
Alignment locationCM002456.1:667278..668780 -

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Properties
Property NameValue
Productcaax amino terminal protease family domain-containing protein
Orig transcript idgnl|cribi|Naga_100022g5.874.mrna
Orig protein idgnl|cribi|Naga_100022g5.874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:667278..668780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g5gene859Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29775.1cds896Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna896rna896-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna896 ID=rna896|Name=rna896|organism=Nannochloropsis gaditana|type=mRNA|length=1619bp
CCAGGCCTGCCCGGTCGCGTCTTTAACACGCAGTTCTTGGGTGAGCACAG
TCACCCTCATTTCTTATGCACTTTAAGTTGTGCATCGGGCGCCGTTTCGA
AATCAGAAAGAGTGTTTCTTCCATGCTGTCTGAGAGGCCTCGCATCTGGT
TTGAATCCCTGTGGTAATTTCGTACGGCACACACGCACATTCAACGCAGG
ATTTCTGATAATCCAGCATGAAGCTTAGCGTCATTCTAGCGCTGACTGTG
GCAACGGCAGCTCAGGCTGCTGTCGTGACCTTGACCCCTGCGAACTTCGA
TCAAGTCGTGGACGGTTCTCAAAACGTGCTGGTAGAATTCTACGCCCCCT
GGTGCGGGCATTGCAAGACTTTGGCTCCTGAGTATGAGATCGCCGGGGAC
GTCTACAAGGCAGGGGATGGGGTCGTCATTGCCAAGGTGGACGCTGATGC
TGAGCGCAGCCTGGGGGAACGTTTTGATGTGAAGGGCTTTCCTACATTAA
AGTGGTTCCCCAAAGGAAGCACCGCACCCGAGGAATACGAGGGTGGGCGC
ACGGCCGACACGATCGTGTCGTGGGTAAACGGAAAGACGGGGCTGTCCCG
CAAAGTCAAAAAAATGGCGTCTGCAGTGGTCGAGCTGACGGATGGCAATT
TTGATTCCTTAGCGATGGACCCGACAAAGGATGTATTGGTTGGCTTTACT
GCGCCGTGGTGCGGTCACTGCAAGACTCTGGCCCCTAAGTACGAGGCGGT
CGCTAAGATTTTTGCGGGTGAACGAGACGTGGTCGTGGCCAAGGTGGATG
CCACGCAGTACCGTGACTTGGCTTCTCGCTTTGACGTGTCTGGATACCCG
ACCCTGAAGTTCTTTCCCAGGGGGGAGGGAAAGGAGGTGGAGGCATACGA
GCACGGTCGGGATGTTGTGGACTTCGTTAATTTTCTGAACGAGAAAGCGG
GCACCGCCTACACGGCCACAGGGGGTCTCTTGCCGTCGGCGGGCCGGATC
GCGGAGTTGGATGCGCTGGTCGCCTCTGTGCAGGGAATCACCTCTGAAAC
TCTGACCAAAGCGAAAGAAGTTGCAACCGGCTTGAAAGATCAAGCAGCAG
CGCACGGAGACGTGTATCTTAAGGCTATCGAGAAGGTTCTGACAAAAGGT
GCCGCGTACGTGGATACAGAAGCGGAACGTCTTCGAAAGCTCTTGGCCGG
AGACAACATCAGTCCCGAAAAGAAGGCCCTTTTCTTAATCAAGACGAACA
TTCTGCGGGCTTTTAAAGGGGAGCCTGTAGAAGAAGTGCCAGCGAACGAG
GAACTCTAGAGATGTCTGGAGTGAGGTGATGAGAGGAGGGAGGCAGTGGC
AGGGTCTAGGTGAGCATCACGTTGCAGTACCCACGCTTTCACTTCCTGAA
AGGCGATATGCCAGAGTAGTATTAAAACTCATGAAAGAATTAGCAAAGTG
TTGGATAGGCACCTGATCGGAGATAAGAGAGAGCGGTCATCATGGGATGC
AATAATTTCCCCATGATAGGGGGATAAAAAGGAACATACCATCGTCTTCG
TGGGTTACACATGCGATCCCAATACATTTGCGTATGCTACCAAAATTTAC
CTTTTTTTGTACACCAAAC
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protein sequence of rna896

>rna896-protein ID=rna896-protein|Name=rna896|organism=Nannochloropsis gaditana|type=polypeptide|length=500bp
MPLLKKRKCGRGWFGPKVLVAFTVSSCTWPLAVAFSSFNPLPRGGYPTLP
PAGLQRNARGPSLLPQTFNIPAPSVSKFSGHMNHVLPPLRSPQGSHEVGH
RVGNQAQVACRTLSYLAVTGSFLARRRRQQRCLSRVHPLQSSAAASPMDE
GEESWSASELPSYRERPRGAPAWTPTWIVTLHPLIQMLVMVALYFFHMLV
LSKVAMPFPFQLVPNTHGLFQSIGMDSLAGLLVLGAAAYFRRARGLPLKP
VVFGARPLPFNPPKRGRGKVWRILFLLMVAYLTSGSASKWVEDVFGLSEL
NVALGRAVQVLAGHLVWVLLGVGILKTQAGEGGDKPFFGKKSVWMKSSWN
TYWLWWAIGGYYVSSLAFHVADTVNQVVLPASAFEVDSVVTQMINPEGND
VVAMLVGSLAPCVSAPWWEEVLYRGFLLPALYLFYPADVATLVSAVIFAA
HHMSMSGMIPLTTLGYLWAVLYLLSGNLLVPIAIHSLWNSRVFLGSLLGI
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mRNA from alignment at CM002456.1:667278..668780-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna896 ID=rna896|Name=rna896|organism=Nannochloropsis gaditana|type=mRNA|length=1503bp|location=Sequence derived from alignment at CM002456.1:667278..668780- (Nannochloropsis gaditana)
ATGCCTCTATTAAAGAAAAGGAAGTGTGGTCGCGGCTGGTTTGGGCCTAA
AGTCCTGGTCGCCTTCACCGTGTCTTCATGCACTTGGCCGCTCGCTGTGG
CCTTCAGCTCTTTCAATCCCCTCCCGCGCGGTGGCTATCCCACTCTACCG
CCTGCAGGCTTGCAACGCAACGCCAGAGGGCCGAGTTTACTGCCACAGAC
ATTTAATATCCCAGCTCCAAGCGTTTCAAAGTTTAGTGGCCATATGAATC
ATGTGCTGCCTCCGCTTCGAAGTCCGCAGGGCTCTCACGAAGTTGGACAT
CGTGTCGGAAACCAGGCGCAAGTCGCTTGTCGGACTTTGTCGTATTTGGC
AGTTACTGGGTCTTTTCTAGCCCGTAGAAGAAGACAGCAGCGATGCTTAT
CGCGTGTCCACCCATTGCAAAGCTCGGCTGCCGCGTCTCCCATGGATGAG
GGGGAAGAGAGCTGGAGCGCAAGCGAACTTCCCTCCTACAGAGAACGACC
CCGGGGAGCCCCGGCATGGACACCCACGTGGATTGTGACGCTGCATCCAC
TCATCCAGATGCTCGTCATGGTGGCATTATATTTCTTTCACATGCTCGTG
CTGTCCAAGGTAGCCATGCCGTTTCCATTTCAGCTGGTGCCGAACACCCA
CGGTCTTTTCCAATCCATAGGCATGGATTCACTCGCAGGTCTTCTGGTCC
TCGGAGCTGCGGCCTACTTTCGGCGCGCCCGAGGGCTTCCGTTGAAGCCG
GTGGTGTTCGGAGCTCGACCCCTGCCCTTCAACCCCCCCAAAAGGGGGCG
GGGGAAGGTATGGCGCATCCTCTTTCTTCTCATGGTCGCCTACCTGACTT
CAGGCTCGGCATCCAAATGGGTAGAGGATGTCTTTGGTCTGTCCGAGCTG
AACGTGGCGCTGGGTCGCGCGGTGCAGGTGCTGGCCGGTCACCTGGTTTG
GGTCCTCCTCGGCGTGGGCATCCTCAAGACTCAGGCGGGAGAGGGCGGAG
ACAAGCCTTTTTTCGGGAAGAAGAGCGTGTGGATGAAGTCGAGCTGGAAC
ACGTACTGGCTGTGGTGGGCGATTGGCGGATACTACGTGTCTTCGCTGGC
GTTTCACGTCGCCGACACAGTCAACCAGGTGGTGTTGCCGGCCTCGGCCT
TTGAAGTGGATTCGGTCGTGACGCAGATGATCAACCCGGAGGGTAACGAT
GTCGTTGCCATGCTGGTGGGCTCCCTCGCGCCCTGTGTATCCGCCCCGTG
GTGGGAGGAAGTCCTGTACCGTGGCTTTCTCCTTCCGGCATTGTACCTCT
TCTACCCTGCCGACGTTGCCACGCTTGTCAGTGCGGTCATTTTTGCCGCG
CACCACATGAGTATGAGTGGGATGATCCCCCTGACGACCCTAGGATACCT
GTGGGCCGTCCTCTACCTGTTATCAGGAAACCTCCTTGTCCCCATAGCAA
TCCATTCGCTTTGGAATTCACGTGTGTTTTTAGGATCTCTTCTCGGAATA
TAA
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Coding sequence (CDS) from alignment at CM002456.1:667278..668780-

>rna896 ID=rna896|Name=rna896|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002456.1:667278..668780- (Nannochloropsis gaditana)
ATGCCTCTATTAAAGAAAAGGAAGTGTGGTCGCGGCTGGTTTGGGCCTAA
AGTCCTGGTCGCCTTCACCGTGTCTTCATGCACTTGGCCGCTCGCTGTGG
CCTTCAGCTCTTTCAATCCCCTCCCGCGCGGTGGCTATCCCACTCTACCG
CCTGCAGGCTTGCAACGCAACGCCAGAGGGCCGAGTTTACTGCCACAGAC
ATTTAATATCCCAGCTCCAAGCGTTTCAAAGTTTAGTGGCCATATGAATC
ATGTGCTGCCTCCGCTTCGAAGTCCGCAGGGCTCTCACGAAGTTGGACAT
CGTGTCGGAAACCAGGCGCAAGTCGCTTGTCGGACTTTGTCGTATTTGGC
AGTTACTGGGTCTTTTCTAGCCCGTAGAAGAAGACAGCAGCGATGCTTAT
CGCGTGTCCACCCATTGCAAAGCTCGGCTGCCGCGTCTCCCATGGATGAG
GGGGAAGAGAGCTGGAGCGCAAGCGAACTTCCCTCCTACAGAGAACGACC
CCGGGGAGCCCCGGCATGGACACCCACGTGGATTGTGACGCTGCATCCAC
TCATCCAGATGCTCGTCATGGTGGCATTATATTTCTTTCACATGCTCGTG
CTGTCCAAGGTAGCCATGCCGTTTCCATTTCAGCTGGTGCCGAACACCCA
CGGTCTTTTCCAATCCATAGGCATGGATTCACTCGCAGGTCTTCTGGTCC
TCGGAGCTGCGGCCTACTTTCGGCGCGCCCGAGGGCTTCCGTTGAAGCCG
GTGGTGTTCGGAGCTCGACCCCTGCCCTTCAACCCCCCCAAAAGGGGGCG
GGGGAAGGTATGGCGCATCCTCTTTCTTCTCATGGTCGCCTACCTGACTT
CAGGCTCGGCATCCAAATGGGTAGAGGATGTCTTTGGTCTGTCCGAGCTG
AACGTGGCGCTGGGTCGCGCGGTGCAGGTGCTGGCCGGTCACCTGGTTTG
GGTCCTCCTCGGCGTGGGCATCCTCAAGACTCAGGCGGGAGAGGGCGGAG
ACAAGCCTTTTTTCGGGAAGAAGAGCGTGTGGATGAAGTCGAGCTGGAAC
ACGTACTGGCTGTGGTGGGCGATTGGCGGATACTACGTGTCTTCGCTGGC
GTTTCACGTCGCCGACACAGTCAACCAGGTGGTGTTGCCGGCCTCGGCCT
TTGAAGTGGATTCGGTCGTGACGCAGATGATCAACCCGGAGGGTAACGAT
GTCGTTGCCATGCTGGTGGGCTCCCTCGCGCCCTGTGTATCCGCCCCGTG
GTGGGAGGAAGTCCTGTACCGTGGCTTTCTCCTTCCGGCATTGTACCTCT
TCTACCCTGCCGACGTTGCCACGCTTGTCAGTGCGGTCATTTTTGCCGCG
CACCACATGAGTATGAGTGGGATGATCCCCCTGACGACCCTAGGATACCT
GTGGGCCGTCCTCTACCTGTTATCAGGAAACCTCCTTGTCCCCATAGCAA
TCCATTCGCTTTGGAATTCACGTGTGTTTTTAGGATCTCTTCTCGGAATA
TAA
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Synonyms
Publications