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Properties
| Property Name | Value |
|---|
| Product | photosystem ii s4 domain protein |
| Orig transcript id | gnl|cribi|Naga_100303g8.776.mrna |
| Orig protein id | gnl|cribi|Naga_100303g8.776 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037250.1 | supercontig | KK037250.1:578648..580473 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna8959 ID=rna8959|Name=rna8959|organism=Nannochloropsis gaditana|type=mRNA|length=876bp
CGGGAAGATTCACGCCGCATTGTTCTCACGGACCCATTCTTCCAGCATAC
CCGCAGATCCGTATGGGCAAAGCCTACCAGTCCTTGTCCGCGTCGTGGCA
GTTTTTAGCCGCCTTGGTTCTATTCCTTCTCGCACATGGCAACTGTGACG
CCCGCGCCCCCGCGCAAGACTTGGGAGGAGAGACAGATGCGCTCAACCTC
GTAAATCACCTCGCCTTGCGGCGCCGACTTGTGACGGCGTCGGAGGTCCT
CTCGGAAGGACAAGGGTACAACCCCAACCTGGACAATCAATCCTACTACG
AGCCCCTGCCCCCCTCGTCTCAAGAGCAGTACCAGCAGCGGGCACAGCAC
CGTTCAAGCACGGAGGCCCACAGCGATGATGAAAACGCCATTAATTTGCG
CAGCGGGGGTGTACGGATGTAAACACATGCCAGCGTGCTGATGGCTCCGT
GCATCTACCCAAGCCGCTCGTTGCTCCTCGATGAGAGGGAATGCTTGAGA
GGGCGAATGGCGCAGGCGCGAAGGATCTATGTTGGAAGATGACTGGGCTT
TGAAGACGTCTTTTGATGTAAATATGCCAGTAGAAGTGCACGGCATTGTA
GTACCAAGAAACGAATTTGTGGGGTGAGGCCCCTGGAGGCAAAGGGTAGA
TCGCCAAGGCGAAGATGGCCTGGCCCCTCTGTACATGTGGAAATTGACAT
AGCTAATGAAACAAGTAAGCGAATGCGTGGATCGGGCAGACATTGCATTG
AGGTCCAGTAACAGCTCCCCGTCATCGAATTAACCCGAACGAATCCAGGC
GACATAATCCGGCCGTGACGGTCAAAGGAAAGGAACAGGAAAAGGTGCAG
AAAGCACGTTGGAGACCACGTGTTGG back to topprotein sequence of rna8959 >rna8959-protein ID=rna8959-protein|Name=rna8959|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MSEPYHWSVRRRGPLNHVRLLLLAVLAIMVPVPAFVSIFPAPPRAPRLHA
GGGGNSVNREELRKSLVAEGLDDILAARAVEAADKAVSIWEMQVIDFCRP
PEVATMTRVLGRVADLSITCGGGFPQAERQRVFFSRALDYAVDEEDARKE
RGGYLAAISVEGNFIFDRATHRDFLGALLGTGIAREKVGDILLQGERGAH
VVVAPDVAEYVVLSLAAVRSVPVKNKPIALADLGVRPPVTKEVRVGVRER
GRGGGRTRRGERGKIDEY back to topmRNA from alignment at KK037250.1:578648..580473- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna8959 ID=rna8959|Name=rna8959|organism=Nannochloropsis gaditana|type=mRNA|length=1826bp|location=Sequence derived from alignment at KK037250.1:578648..580473- (Nannochloropsis gaditana)
TCGCTCTCGTAAAAGTTTTGGCCGGACAGCTATCAAAGACACGATAGTTT
ACCTCCCCATCCCCCTTTCCGCTAAACCACACAGGCAGTAGGCTTCTGCT
TTCTTTTTCGATCGGACGTCGAGAGATGTCAGAGCCCTATCATTGGTCAG
TCAGGAGAAGAGGGCCCTTAAACCATGTGAGACTCCTGCTCTTGGCCGTT
CTGGCAATCATGGTACCCGTGCCTGCGTTTGTCTCGATCTTTCCTGCTCC
GCCTCGGGCGCCGCGTCTACATGCTGGTGGCGGAGGCAACAGCGTAAATC
GGGAAGAATTGCGGAAAAGCCTGGTTGCCGAAGGCCTTGACGACATCTTG
GCGGCACGCGCCGTGGAGGCAGCGGACAAAGCCGTCAGCATCTGGGAAAT
GCAGGTGATAGACTTTTGTCGGCCCCCCGAGGTAGCGACCATGACCAGAG
TCCTTGGTCGGGTCGCCGACCTGTCTATCACCTGTGGCGGAGGCTTTCCC
CAAGCTGAACGGCAACGTGTATTTTTCTCTCGTGCGCTCGACTATGCAGT
GGACGAGGAAGACGCACGCAAGGAACGGGGAGGCTACCTAGCTGCCATTT
CCGTGGAAGGTAACTTTATTTTCGATCGGGCCACCCACCGGGATTTTCTG
GGCGCATTGCTGGGGACAGGCATAGCAAGGGAAAAGGTAAGCTCTGGTCG
GGGCTCAGAAAAGCGTGCAGGAGAGGAGATTTGCCGGACAGATGATTGGA
TTGGAAGGGCTTGTGATGGGGTCGGAGGGGCTTGTCAAGTCACCCAACGG
ATAAGACATGGTGCCCGGTACATAAAGCACCGGCCCCTGGTGTCATAGGA
AGCCCCACGCCACGCCCCTGGGGTTGTCTAACTCCCGGCTTCCCGGCGCT
CGGCATGAACAGGTCGGAGACATATTGCTCCAAGGCGAACGCGGCGCGCA
TGTGGTCGTGGCGCCTGACGTTGCCGAATATGTGGTGCTCTCTCTGGCCG
CGGTTCGAAGTGTGCCTGTCAAGAACAAGCCCATTGCCTTGGCTGACTTG
GGAGTGCGGCCGCCCGTCACGAAGGAGGTTCGTGTGGGAGTCAGGGAAAG
AGGGCGGGGGGGAGGGAGGACGAGGAGGGGTGAGAGGGGTAAAATCGATG
AATATTGATGGTTATTGACTCAAAAGTAGTGCTGTTGAATGAGAGATATG
GTAGGACGGCCTCCCGAGCCCTTTAAGCCTTGCCTTCTTATCCTCGTCAC
ACCCTGACCTACCCGTGTAGATGCAATCTGTGGAGGCCTCCATGCGCCTG
GACGCCGTCGCCAGCGCCGGGATGGGGATGAGTCGGAGTAAATTGAAGGT
GATTGAGCCGCTGTTTGGAGGGGAGTGGGGGCGTTTCTCGTTTCGGTATC
AAGGAGCGAGTGCGCGTCGGCGGGAAGCACCTCAAACTGCGAGCACGCAT
TAGCTACCTACAGAGCGCGTGTGTGTGTAGTGTAGCAGGCCTGGACGCGC
TCTTATGTGTCCTTATCTTTCCTTTGTCCCCCCTCCTCAGGATATGATAG
AAGGCGGAGACGTCCTAGTCAACTGGAAAGAAATCACCTCTGCGAACGCG
CAGCTCAAGGGCGGGGACATTGTAACCATTCGGGGGAAGGGGCGTTTGGA
AGTGAACGAGGTGGAGACGACAAGCAAAGGGAAGTTTCGTGTAAAGATGA
CGAAATTTGTCTAATTTTGCGAGGAGTGCAGCATGAAAGAGGAGTTCATA
AGAAGACTGGAACTGTGCAAATTAAAGATTGAATGTGCCAGGACTCGAAA
ACTGAAAGCATAAACACTGTTTAGCA back to topCoding sequence (CDS) from alignment at KK037250.1:578648..580473- >rna8959 ID=rna8959|Name=rna8959|organism=Nannochloropsis gaditana|type=CDS|length=1614bp|location=Sequence derived from alignment at KK037250.1:578648..580473- (Nannochloropsis gaditana)
GTCGGAGACATATTGCTCCAAGGCGAACGCGGCGCGCATGTGGTCGTGGC
GCCTGACGTTGCCGAATATGTGGTGCTCTCTCTGGCCGCGGTTCGAAGTG
TGCCTGTCAAGAACAAGCCCATTGCCTTGGCTGACTTGGGAGTGCGGCCG
CCCGTCACGAAGGAGGTTCGTGTGGGAGTCAGGGAAAGAGGGCGGGGGGG
AGGGAGGACGAGGAGGGGTGAGAGGGGTAAAATCGATGAATATTGAATGT
CAGAGCCCTATCATTGGTCAGTCAGGAGAAGAGGGCCCTTAAACCATGTG
AGACTCCTGCTCTTGGCCGTTCTGGCAATCATGGTACCCGTGCCTGCGTT
TGTCTCGATCTTTCCTGCTCCGCCTCGGGCGCCGCGTCTACATGCTGGTG
GCGGAGGCAACAGCGTAAATCGGGAAGAATTGCGGAAAAGCCTGGTTGCC
GAAGGCCTTGACGACATCTTGGCGGCACGCGCCGTGGAGGCAGCGGACAA
AGCCGTCAGCATCTGGGAAATGCAGGTGATAGACTTTTGTCGGCCCCCCG
AGGTAGCGACCATGACCAGAGTCCTTGGTCGGGTCGCCGACCTGTCTATC
ACCTGTGGCGGAGGCTTTCCCCAAGCTGAACGGCAACGTGTATTTTTCTC
TCGTGCGCTCGACTATGCAGTGGACGAGGAAGACGCACGCAAGGAACGGG
GAGGCTACCTAGCTGCCATTTCCGTGGAAGGTAACTTTATTTTCGATCGG
GCCACCCACCGGGATTTTCTGGGCGCATTGCTGGGGACAGGCATAGCAAG
GGAAAAGGTCGGAGACATATTGCTCCAAGGCGAACGCGGCGCGCATGTGG
TCGTGGCGCCTGACGTTGCCGAATATGTGGTGCTCTCTCTGGCCGCGGTT
CGAAGTGTGCCTGTCAAGAACAAGCCCATTGCCTTGGCTGACTTGGGAGT
GCGGCCGCCCGTCACGAAGGAGGTTCGTGTGGGAGTCAGGGAAAGAGGGC
GGGGGGGAGGGAGGACGAGGAGGGGTGAGAGGGGTAAAATCGATGAATAT
TGAATGTCAGAGCCCTATCATTGGTCAGTCAGGAGAAGAGGGCCCTTAAA
CCATGTGAGACTCCTGCTCTTGGCCGTTCTGGCAATCATGGTACCCGTGC
CTGCGTTTGTCTCGATCTTTCCTGCTCCGCCTCGGGCGCCGCGTCTACAT
GCTGGTGGCGGAGGCAACAGCGTAAATCGGGAAGAATTGCGGAAAAGCCT
GGTTGCCGAAGGCCTTGACGACATCTTGGCGGCACGCGCCGTGGAGGCAG
CGGACAAAGCCGTCAGCATCTGGGAAATGCAGGTGATAGACTTTTGTCGG
CCCCCCGAGGTAGCGACCATGACCAGAGTCCTTGGTCGGGTCGCCGACCT
GTCTATCACCTGTGGCGGAGGCTTTCCCCAAGCTGAACGGCAACGTGTAT
TTTTCTCTCGTGCGCTCGACTATGCAGTGGACGAGGAAGACGCACGCAAG
GAACGGGGAGGCTACCTAGCTGCCATTTCCGTGGAAGGTAACTTTATTTT
CGATCGGGCCACCCACCGGGATTTTCTGGGCGCATTGCTGGGGACAGGCA
TAGCAAGGGAAAAG back to top
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