rna8957, rna8957 (mRNA) Nannochloropsis gaditana

Overview
Namerna8957
Unique Namerna8957
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length351
Alignment locationKK037250.1:574754..575293 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100303g5.773.mrna
Orig protein idgnl|cribi|Naga_100303g5.773
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:574754..575293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100303g5gene8684Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8957rna8957-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21744.1cds8927Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8957 ID=rna8957|Name=rna8957|organism=Nannochloropsis gaditana|type=mRNA|length=351bp
ATGGCACGCGAGGCCGCGCTCCCGCTTCGTCGTCCCGGGATACATGCCGC
GTTTGGTCAAATAAAAAAGGATCAAATGCCTTACCATGGCGGGCATCAGC
TTCATGCGGATTTGTTCAAGCGTATCTTTGGATTTCGCTGCTTTAATGGG
ACAAGGGGTTGTAATCCGCGGGGTCATGGTCAATGGAGCACCGCAGCGGA
GCACCGCAATAGTATCTATTCAGATGCCCCTACTCTATCTTCGTCTTCCG
GGCGACCCGCTTTGCAATTATTCCATCACCCCTGCGACACTTTCAATACA
TTCATGCAAGGGCGAAGGCTGGTATTCCGGCGCTCACAGCTCAAGTCGTA
G
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protein sequence of rna8957

>rna8957-protein ID=rna8957-protein|Name=rna8957|organism=Nannochloropsis gaditana|type=polypeptide|length=179bp
MTRVVSRMMEMLFASLSASRSKPPPPLSEVVATLRVSAIDVVLDVASSRR
YDRDLSSRLKVGGLRGFLPEQNARLVFLHHLSFNVVFDFRRGGGGCKHRT
AACWREAEGKIRRLRNFQMTSPTVALVVVDLTVHVLWSVPAGTALWAFCA
WRQSWCLSSLRRHGPGRCVAGWGTIEAFV
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mRNA from alignment at KK037250.1:574754..575293+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8957 ID=rna8957|Name=rna8957|organism=Nannochloropsis gaditana|type=mRNA|length=540bp|location=Sequence derived from alignment at KK037250.1:574754..575293+ (Nannochloropsis gaditana)
ATGACAAGAGTTGTCTCGAGGATGATGGAAATGCTATTCGCCTCCCTATC
AGCTTCTCGCTCAaaaccgcccccccctctttcagAGGTCGTCGCAACCC
TTAGAGTAAGTGCGATTGATGTTGTGCTAGATGTCGCATCATCGCGGCGG
TATGATCGTGACCTGTCTTCCCGCTTGAAAGTGGGAGGTTTGAGGGGATT
CCTGCCTGAGCAGAACGCGCGTCTTGTATTCCTGCATCATCTTTCTTTCA
ATGTCGTGTTCGATTTCCgccgcgggggtgggggctgCAAGCACCGTACT
GCTGCGTGTTGGcgtgaggcggagggaaaaaTCAGAAGATTAAGAAACTT
TCAGATGACGAGTCCGACGGTCGCCTTGGTTGTCGTCGACTTGACGGTCC
ATGTCCTCTGGAGTGTGCCTGCCGGGACGGCGCTCTGGGCGTTTTGCGCA
TGGCGCCAGTCCTGGTGCCTCTCAAGCTTAAGGAGGCATGGGCCGGGTCG
ATGCGTGGCCGGCTGGGGAACAATCGAGGCATTTGTATGA
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Coding sequence (CDS) from alignment at KK037250.1:574754..575293+

>rna8957 ID=rna8957|Name=rna8957|organism=Nannochloropsis gaditana|type=CDS|length=540bp|location=Sequence derived from alignment at KK037250.1:574754..575293+ (Nannochloropsis gaditana)
ATGACAAGAGTTGTCTCGAGGATGATGGAAATGCTATTCGCCTCCCTATC
AGCTTCTCGCTCAaaaccgcccccccctctttcagAGGTCGTCGCAACCC
TTAGAGTAAGTGCGATTGATGTTGTGCTAGATGTCGCATCATCGCGGCGG
TATGATCGTGACCTGTCTTCCCGCTTGAAAGTGGGAGGTTTGAGGGGATT
CCTGCCTGAGCAGAACGCGCGTCTTGTATTCCTGCATCATCTTTCTTTCA
ATGTCGTGTTCGATTTCCgccgcgggggtgggggctgCAAGCACCGTACT
GCTGCGTGTTGGcgtgaggcggagggaaaaaTCAGAAGATTAAGAAACTT
TCAGATGACGAGTCCGACGGTCGCCTTGGTTGTCGTCGACTTGACGGTCC
ATGTCCTCTGGAGTGTGCCTGCCGGGACGGCGCTCTGGGCGTTTTGCGCA
TGGCGCCAGTCCTGGTGCCTCTCAAGCTTAAGGAGGCATGGGCCGGGTCG
ATGCGTGGCCGGCTGGGGAACAATCGAGGCATTTGTATGA
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Synonyms
Publications