rna8956, rna8956 (mRNA) Nannochloropsis gaditana

Overview
Namerna8956
Unique Namerna8956
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1400
Alignment locationKK037250.1:573577..574011 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100303g3.772.mrna
Orig protein idgnl|cribi|Naga_100303g3.772
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:573577..574011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100303g3gene8683Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8956rna8956-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21743.1cds8926Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8956 ID=rna8956|Name=rna8956|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp
CAGGCTTTTGGGATCTCCTTCGGTCCGAATCACCTGCCTGGGCCCGATCG
CATGCCTGGATAGTCATATGAGGATGTGCATGCTTTTTGCTGTTGAGATC
AGAGGGGAGCCACTCTTCTCGAGTACCGTTGAGGACGAATTTGGAGGTGG
CCATTCATCCCACCTCCGAGCTAGCCAAGCCGGCCCTGGTCGCCTTGCCC
CCCTTTCAAGTCAGACATGGCCTTCTTGTCTCATATAAATCCGACAACCA
GAGGATAATATCACAATTTGGAGGCATTGCACGTCTAGATGTGTCAAGTG
TCGATGCGGAGGGCGGCGTTAGCCTGGGGTCTATGCCTGTGTCTGCGACC
GTTCTTGTGTATCAAGTTCAGCTACGCATGTGCGCTAATGGCATGCCACT
CCTCTCTCAACGTCTTGTCTCATCTATAAATCTTTCCCCCCCACTGAATG
AAGTGCGTTTAAAAATGGGACGACGATCCCTTGTCCTCGTTACCGTGGCG
GCCATATGTGCGGGTCTTTGTACTGCCTTCGTCCCCTCCGCGCCTCTACC
CAGCTGCGCCTCGGGCTCGAGCACTAGCAGACGTCAGACGATTGTGATGG
GGAATCATCGCTCCTCCCAAGCCGCACGCCGGCGCACCTCCTTTCTGAAG
CACGTGAAGGCCCCCTTACACAAACGTCGCACCATCATGAGCTCTCCTCT
GAGCAAAGAACTCCGGGCAGAGCACGGCGGGGTGCGATCCATTCCCGTCC
GCACGGGGGATGAAGTGGTGGTGACGGCGGGCGACCACCGAAAGAAAGTA
GGCAAGGTGATTGGCGTGGACCGGAAGAAGTACTACATCCACGTGGAAGG
GATCACGCGCGAGAAGGCGGGGGGGAAAGAAGCGGGTAAGACAAGCACGA
CAATCCCCGTGCCCATCCGCGCTTCCAGCGTCAGGATCACCAAGCTGTAC
CTGGATAAATCCCGGGAAGCCATCTTGAAACGCCGGGCGGAGGGGCGGGC
CGAGCTTGCCGCACGGAAGAACAACATCCAGCTTGCGGAGCCCGGGCAGG
ACCCGGCCTGGGCGGAGTACCAGACCACCTTAACTTCTATATTGGATGGA
TCCGCGTAGGGCGGGGAAAAGGAGGAGGAAACGGGCTGCGGGGTAGAGTG
GGAAGGAGGGCGAGGTGGGGGGGTTGGAAGGGAGGACCCTGTCCTCGGTC
GCGCCTTCATTTCCTCTTCGTCCTCCTCTGACCGGTTTTTCCCCGCAGCG
TGGGTGTTTCTCGTACCGGCCTCGATTCTGCCCCGTTTCGAGGGCAGAGC
GGAGGGGTCGGGGGGAAGGCGGGGGACGAGGGCGAGGAGGGGCAAGGAGG
GAATAGGAGGGAAGAAAGTGAAAAAGAAGGAGTTGAAGTCAGCGGGTTGT
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protein sequence of rna8956

>rna8956-protein ID=rna8956-protein|Name=rna8956|organism=Nannochloropsis gaditana|type=polypeptide|length=116bp
MAREAALPLRRPGIHAAFGQIKKDQMPYHGGHQLHADLFKRIFGFRCFNG
TRGCNPRGHGQWSTAAEHRNSIYSDAPTLSSSSGRPALQLFHHPCDTFNT
FMQGRRLVFRRSQLKS
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mRNA from alignment at KK037250.1:573577..574011+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8956 ID=rna8956|Name=rna8956|organism=Nannochloropsis gaditana|type=mRNA|length=435bp|location=Sequence derived from alignment at KK037250.1:573577..574011+ (Nannochloropsis gaditana)
ATGGCACGCGAGGCCGCGCTCCCGCTTCGTCGTCCCGGGATACATGCCGC
GTTTGGTCAAATAAAAAAGGATCAAATGCCTTACCATGGCGGGCATCAGC
TTCATGCGGATTTGTTCAAGCGTATCTTTGGATTTCGCTGCTTTAATGGG
ACAAGGGGTTGTAATCCGCGGGGTCATGGTCAATGGAGCACCGCAGCGGA
GCACCGCAATAGTATCTATTCAGATGCCCCTACTCTATCTTCGTCTTCCG
GGCGACCCGCTTTGCAATTATTCCATCACCCCTGCGACACTTTCAATACA
TTCATGCAAGGGCGAAGGCTGGTATTCCGGCGCTCACAGGTACGTGCACA
AAAGCCAGTCGAATACTTCaccctcgccttcttccctgaCTCTCGAGTTT
CCCATTGGTGTATGTATGTAAAGCTCAAGTCGTAG
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Coding sequence (CDS) from alignment at KK037250.1:573577..574011+

>rna8956 ID=rna8956|Name=rna8956|organism=Nannochloropsis gaditana|type=CDS|length=702bp|location=Sequence derived from alignment at KK037250.1:573577..574011+ (Nannochloropsis gaditana)
ATGGCACGCGAGGCCGCGCTCCCGCTTCGTCGTCCCGGGATACATGCCGC
GTTTGGTCAAATAAAAAAGGATCAAATGCCTTACCATGGCGGGCATCAGC
TTCATGCGGATTTGTTCAAGCGTATCTTTGGATTTCGCTGCTTTAATGGG
ACAAGGGGTTGTAATCCGCGGGGTCATGGTCAATGGAGCACCGCAGCGGA
GCACCGCAATAGTATCTATTCAGATGCCCCTACTCTATCTTCGTCTTCCG
GGCGACCCGCTTTGCAATTATTCCATCACCCCTGCGACACTTTCAATACA
TTCATGCAAGGGCGAAGGCTGGTATTCCGGCGCTCACAGCTCAAGTCGTA
GATGGCACGCGAGGCCGCGCTCCCGCTTCGTCGTCCCGGGATACATGCCG
CGTTTGGTCAAATAAAAAAGGATCAAATGCCTTACCATGGCGGGCATCAG
CTTCATGCGGATTTGTTCAAGCGTATCTTTGGATTTCGCTGCTTTAATGG
GACAAGGGGTTGTAATCCGCGGGGTCATGGTCAATGGAGCACCGCAGCGG
AGCACCGCAATAGTATCTATTCAGATGCCCCTACTCTATCTTCGTCTTCC
GGGCGACCCGCTTTGCAATTATTCCATCACCCCTGCGACACTTTCAATAC
ATTCATGCAAGGGCGAAGGCTGGTATTCCGGCGCTCACAGCTCAAGTCGT
AG
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Synonyms
Publications