rna8948, rna8948 (mRNA) Nannochloropsis gaditana

Overview
Namerna8948
Unique Namerna8948
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length210
Alignment locationKK037250.1:542130..542485 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100213g4.9987.mrna
Orig protein idgnl|cribi|Naga_100213g4.9987
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:542130..542485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100213g4gene8674Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8948rna8948-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21753.1cds8918Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8948 ID=rna8948|Name=rna8948|organism=Nannochloropsis gaditana|type=mRNA|length=210bp
ATGCGTGGTCGGATGGACGTGTACGTCAGCCGCCAAGAGTTGGTAACTAA
CAGCAAAAGCAGGGGAAAGGGAGGGGCATCGTGTGAAGAAAAGGAAGCTA
AAAATGTAGAGTTTCCTTGGAGTGTTCCTCGATGGATTAAGTGCATGATT
TCCTCAACCGCACGCACCGTTTGCACTAATCAAGCGGTGGGGCTTGGTCA
AACACCATGA
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protein sequence of rna8948

>rna8948-protein ID=rna8948-protein|Name=rna8948|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MREYIQEIYKSIPYVLIAVIISRCVSFGSGQRNLDKEFWFPQVRTIQLDK
TCKRSGTNNRAVPQWVSGLSWKDCRNCAPRRWKQCR
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mRNA from alignment at KK037250.1:542130..542485+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8948 ID=rna8948|Name=rna8948|organism=Nannochloropsis gaditana|type=mRNA|length=356bp|location=Sequence derived from alignment at KK037250.1:542130..542485+ (Nannochloropsis gaditana)
ATGAGAGTGCATTAAAAGAGCAGCATCTTCCGCGACGGAAGTCCTGGGGC
GTATCCTCCCGGATCGCCAGCCTGAGAACGCCGAGAACAAGTTATCACAA
GGAATACATCCAAGAAATATACAAGTCCATACCATACGTATTGATTGCTG
TGATCATCTCTAGATGCGTATCATTTGGTAGCGGACAGAGGAATTTAGAC
AAAGAATTTTGGTTCCCTCAGGTACGCACTATACAATTAGATAAAACTTG
CAAGAGATCAGGAACGAATAATCGTGCCGTTCCACAGTGGGTGAGTGGAT
TGAGTTGGAAAGATTGCAGAAATTGTGCACCTCGCCGTTGGAAACAATGC
AGATAG
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Coding sequence (CDS) from alignment at KK037250.1:542130..542485+

>rna8948 ID=rna8948|Name=rna8948|organism=Nannochloropsis gaditana|type=CDS|length=522bp|location=Sequence derived from alignment at KK037250.1:542130..542485+ (Nannochloropsis gaditana)
ATGAGAGAATACATCCAAGAAATATACAAGTCCATACCATACGTATTGAT
TGCTGTGATCATCTCTAGATGCGTATCATTTGGTAGCGGACAGAGGAATT
TAGACAAAGAATTTTGGTTCCCTCAGGTACGCACTATACAATTAGATAAA
ACTTGCAAGAGATCAGGAACGAATAATCGTGCCGTTCCACAGTGGGTGAG
TGGATTGAGTTGGAAAGATTGCAGAAATTGTGCACCTCGCCGTTGGAAAC
AATGCAGATAGATGAGAGAATACATCCAAGAAATATACAAGTCCATACCA
TACGTATTGATTGCTGTGATCATCTCTAGATGCGTATCATTTGGTAGCGG
ACAGAGGAATTTAGACAAAGAATTTTGGTTCCCTCAGGTACGCACTATAC
AATTAGATAAAACTTGCAAGAGATCAGGAACGAATAATCGTGCCGTTCCA
CAGTGGGTGAGTGGATTGAGTTGGAAAGATTGCAGAAATTGTGCACCTCG
CCGTTGGAAACAATGCAGATAG
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Synonyms
Publications