rna8942, rna8942 (mRNA) Nannochloropsis gaditana

Overview
Namerna8942
Unique Namerna8942
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length822
Alignment locationKK037250.1:532140..533535 +

Link to JBrowse

Properties
Property NameValue
ProductProtein of unknown function DUF1295
Orig transcript idgnl|cribi|Naga_100298g1.7621.mrna
Orig protein idgnl|cribi|Naga_100298g1.7621
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:532140..533535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100298g1gene8668Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8942rna8942-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21765.1cds8912Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8942 ID=rna8942|Name=rna8942|organism=Nannochloropsis gaditana|type=mRNA|length=822bp
ATGGGTAGTGGCGGGGATGTTGATAGTTACTACAGTGGAGCAGGAGCGCT
TACCACCCCCAGTATCCCTGTGCTGTTGCGGGCTCTTGAGGCCCGGCTGT
CGATAGAAGAAGCAGGAAGGCCACCATGTCGAGGAAGTTGTGCACCGCTT
GGCAGTCTTCGAAGCTATGAAATCCTGCTGCGGTACCACAATAAGCAGGA
TCAGAGTGCCAAGAGCTTAGGGCCAACCAATGTGACGACAAAACAACGTC
TTCATGGGATGACCTTGGAGCTACAGAGGGCGCACCGGTATGAGGCGGCA
GAGGCCTTGGACCTAGTTGTCGCGTGGCTGTTACGATTTGAAGAGGAACA
AGAACGTCACCCTCACAGCAATGGAGACAAAGGTTCGGTGTTTCCTTCAT
CCTCCGTCCTGACGGTCTTGTCTCTGTTGGCAGGCGCTCCTGGCTTGGTG
GAAGAGAGTGCGGGCATCGGAGCCAGGAACCTGGGTCCTTTGGCTACTGG
GTTGTTAACACGGTCTAGGCAACAGACCCCCGAGTCGGACGCCGTGTTAC
GACCAGAGCATCGCAGCAAACAAGGACATGTGCCACCAGGGCCCTCAAGG
AGACTGGAGGTGGCCAGAGGGGGATGTCGACATCTGGGAGAGACGTGGGC
ACGCACGCGTGGGGAGAAGGCACTGGAGCCAGTATTAGAACATCCAGCCC
TCCCGACCCGGGTAGCATCGGATTGGAACGTGATGGGGGAACGAAGGCTG
ATGGATGGGGACGCCCACCAGGAAGGACCCGCTCGACCGTGTCCTCCGCT
CCCGGGCTTGGCGTCAGGCTGA
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protein sequence of rna8942

>rna8942-protein ID=rna8942-protein|Name=rna8942|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
MVCWYNFSPHLTWHLNALVNDIKTRPLETLLRPDKAYVQSSDPFAPILVL
CLWFIALTGLLGAVTQEFSWVDRIWSVAPPLYAWLFALHPYIALDTVWPT
TVSECMTRPFLLAGLASLWGLRLTYNFWRKGGYAGGGEDYRWEEIRTWFS
FSTLQLFNVVFIAFFQNILLFLLIAPAYLAWVGRTYHALTLVDVVLASLF
LLLLLVETVADQQQWVFQRQKYQALFQRPSRKRRASLRATTAESPARPPK
NPDTSIPLVTGDIADGFLQSGLFAFSRHPNFWAEMSLWWVFHLFAYPAAG
IHLERRHDWNNFARWPFWANWTAVGPLLLTLLFQGSTSLTEELSARKYPQ
YRRYQKRVSRLLPWTPKARKD
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mRNA from alignment at KK037250.1:532140..533535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8942 ID=rna8942|Name=rna8942|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp|location=Sequence derived from alignment at KK037250.1:532140..533535+ (Nannochloropsis gaditana)
ACAGATCCCTCACCGCGCGAACACCTATGGTATGCTGGTACAACTTTTCG
CCGCATTTGACCTGGCACCTGAACGCCCTCGTCAACGACATCAAGACCCG
CCCTCTTGaaaccctccttcgcccggACAAAGCGTACGTGCAAAGCTCGG
ACCCCTTTGCCCCCATCCTTGTGCTCTGCCTCTGGTTCATCGCGCTCACC
GGCCTGCTGGGCGCGGTTACCCAAGAATTCTCCTGGGTGGATCGGATCTG
GTcggtcgccccccccttgtaCGCGTGGTTGTTCGCGCTGCACCCGTACA
TAGCGTTGGACACGGTCTGGCCGACGACTGTGTCCGAGTGCATGACCCGC
CCTTTTCTGTTGGCTGGTCTTGCGTCTCTGTGGGGCCTCCGACTCACCTA
CAACTTCTGGCGCAAGGGGGGAtacgcgggggggggagaagactaTCGAT
GGGAGGAGATCAGGACTTGGTTCTCCTTTTCTACCTTGCAGCTCTTCAAC
GTGGTGTTTATTGCCTTCTTTCAGGTGCCTTGACGacgcttccttttccc
cacTCCGTttcttttcgcgccaaatttcTCCCCTGGCCTCATGGCGATAC
CTTGCCACTCAcggttcctcttcctctacccGGCAGAacattctcctctt
cctcctcatcgccccCGCTTATCTCGCCTGGGTGGGCAGGACCTACCATG
CCCTCACCCTCGTCgacgtcgtcctcgcctctctcttcctcctcctcctc
ctcgtcgagaCCGTGGCCGATCAACAACAATGGGTCTTCCAGCGTCAAAA
ATACCAAGCCCTCTTTCAACGTCCCAGCCGAAAgcgccgcgcctccctcc
gggcaACCACCGCGGAatctcccgcccgtcccccGAAAAACCCCGacacc
tccatccccctcgtcACCGGGGACATCGCCGACGGTTTCCTGCAGTCAgg
cctcttcgccttctcccggcACCCAAACTTCTGGGCGGAGATGTCCTTGT
GGTGGGTTTTCCATCTCTTTGCCTACCCGGCCGCGGGCATTCACTTGGAA
CGACGGCACGATTGGAACAACTTCGCACGCTGGCCGTTCTGGGCAAATTG
GACGGCCGTGGGGCCTCTCCTCTtgaccctcctctttcaaggcTCCACCT
CGCTCACAGAGGAGCTCAGCGCCCGCAAATATCCGCAGTACCGGCGCTAC
CAAAAGCGAGTGTCCCGGCTCCTGCCTTGGACTCCCAAGGCGCGGAAGGa
ctgagggggggagggaagggcggggggagggaggtggaccCCACGAGGGG
CCACCGAGATGACGGCAAAttgagaagaggaaagcagagACGGTGACTCA
TTATATCATGGGTGTGCGGAGCTTGGAAAGATGCCTGACCCCCCCC
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Coding sequence (CDS) from alignment at KK037250.1:532140..533535+

>rna8942 ID=rna8942|Name=rna8942|organism=Nannochloropsis gaditana|type=CDS|length=2232bp|location=Sequence derived from alignment at KK037250.1:532140..533535+ (Nannochloropsis gaditana)
ATGGTATGCTGGTACAACTTTTCGCCGCATTTGACCTGGCACCTGAACGC
CCTCGTCAACGACATCAAGACCCGCCCTCTTGaaaccctccttcgcccgg
ACAAAGCGTACGTGCAAAGCTCGGACCCCTTTGCCCCCATCCTTGTGCTC
TGCCTCTGGTTCATCGCGCTCACCGGCCTGCTGGGCGCGGTTACCCAAGA
ATTCTCCTGGGTGGATCGGATCTGGTcggtcgccccccccttgtaCGCGT
GGTTGTTCGCGCTGCACCCGTACATAGCGTTGGACACGGTCTGGCCGACG
ACTGTGTCCGAGTGCATGACCCGCCCTTTTCTGTTGGCTGGTCTTGCGTC
TCTGTGGGGCCTCCGACTCACCTACAACTTCTGGCGCAAGGGGGGAtacg
cgggggggggagaagactaTCGATGGGAGGAGATCAGGACTTGGTTCTCC
TTTTCTACCTTGCAGCTCTTCAACGTGGTGTTTATTGCCTTCTTTCAGAa
cattctcctcttcctcctcatcgccccCGCTTATCTCGCCTGGGTGGGCA
GGACCTACCATGCCCTCACCCTCGTCgacgtcgtcctcgcctctctcttc
ctcctcctcctcctcgtcgagaCCGTGGCCGATCAACAACAATGGGTCTT
CCAGCGTCAAAAATACCAAGCCCTCTTTCAACGTCCCAGCCGAAAgcgcc
gcgcctccctccgggcaACCACCGCGGAatctcccgcccgtcccccGAAA
AACCCCGacacctccatccccctcgtcACCGGGGACATCGCCGACGGTTT
CCTGCAGTCAggcctcttcgccttctcccggcACCCAAACTTCTGGGCGG
AGATGTCCTTGTGGTGGGTTTTCCATCTCTTTGCCTACCCGGCCGCGGGC
ATTCACTTGGAACGACGGCACGATTGGAACAACTTCGCACGCTGGCCGTT
CTGGGCAAATTGGACGGCCGTGGGGCCTCTCCTCTtgaccctcctctttc
aaggcTCCACCTCGCTCACAGAGGAGCTCAGCGCCCGCAAATATCCGCAG
TACCGGCGCTACCAAAAGCGAGTGTCCCGGCTCCTGCCTTGGACTCCCAA
GGCGCGGAAGGactgaATGGTATGCTGGTACAACTTTTCGCCGCATTTGA
CCTGGCACCTGAACGCCCTCGTCAACGACATCAAGACCCGCCCTCTTGaa
accctccttcgcccggACAAAGCGTACGTGCAAAGCTCGGACCCCTTTGC
CCCCATCCTTGTGCTCTGCCTCTGGTTCATCGCGCTCACCGGCCTGCTGG
GCGCGGTTACCCAAGAATTCTCCTGGGTGGATCGGATCTGGTcggtcgcc
ccccccttgtaCGCGTGGTTGTTCGCGCTGCACCCGTACATAGCGTTGGA
CACGGTCTGGCCGACGACTGTGTCCGAGTGCATGACCCGCCCTTTTCTGT
TGGCTGGTCTTGCGTCTCTGTGGGGCCTCCGACTCACCTACAACTTCTGG
CGCAAGGGGGGAtacgcgggggggggagaagactaTCGATGGGAGGAGAT
CAGGACTTGGTTCTCCTTTTCTACCTTGCAGCTCTTCAACGTGGTGTTTA
TTGCCTTCTTTCAGAacattctcctcttcctcctcatcgccccCGCTTAT
CTCGCCTGGGTGGGCAGGACCTACCATGCCCTCACCCTCGTCgacgtcgt
cctcgcctctctcttcctcctcctcctcctcgtcgagaCCGTGGCCGATC
AACAACAATGGGTCTTCCAGCGTCAAAAATACCAAGCCCTCTTTCAACGT
CCCAGCCGAAAgcgccgcgcctccctccgggcaACCACCGCGGAatctcc
cgcccgtcccccGAAAAACCCCGacacctccatccccctcgtcACCGGGG
ACATCGCCGACGGTTTCCTGCAGTCAggcctcttcgccttctcccggcAC
CCAAACTTCTGGGCGGAGATGTCCTTGTGGTGGGTTTTCCATCTCTTTGC
CTACCCGGCCGCGGGCATTCACTTGGAACGACGGCACGATTGGAACAACT
TCGCACGCTGGCCGTTCTGGGCAAATTGGACGGCCGTGGGGCCTCTCCTC
TtgaccctcctctttcaaggcTCCACCTCGCTCACAGAGGAGCTCAGCGC
CCGCAAATATCCGCAGTACCGGCGCTACCAAAAGCGAGTGTCCCGGCTCC
TGCCTTGGACTCCCAAGGCGCGGAAGGactga
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Synonyms
Publications