rna8937, rna8937 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8937
Unique Name	rna8937
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1160
Alignment location	KK037250.1:522354..524634 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100298g6.7619.mrna
Orig protein id	gnl\|cribi\|Naga_100298g6.7619
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:522354..524634 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100298g6	gene8664	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8937	rna8937-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21763.1	cds8907	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:522354..524634-
coding sequence from alignment at KK037250.1:522354..524634-

mRNA sequence

>rna8937 ID=rna8937|Name=rna8937|organism=Nannochloropsis gaditana|type=mRNA|length=1160bp
ACGACTAACTTACGCACAGGGCATTGTTTGATACCTTGGACTGTCCATCT
TAATTGCCAGGGTCGCCACCGGGGGAAGGGACGTCGGCGCGCAGGTTCAA
ACGGGCTGCCAAGAAGACAGCGAGTCTTTCGTGTGCGCGCGTTGGAAGTC
AAGACCGACGCGTTTGAAAGGAGGACAAGCAGGAGAGGGCAATGGCGCTA
CCATGCACGACTGAGTGCTGTGCACCGTGCTGTGGCATATTTTCCATCAT
CGGCTTCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTA
TCTTCGTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTAC
GGAGGCGCGGGTATTTACGCGGGCACCCTTGCTCTATGTGTGGTTGCATG
GATGTATGACAAGAAAAAGAAGGAGCACCGGGCCGCGACGGCAGGTTTAC
TGAAGGAGGAGGAGCACGTCTCTCTCAACATCCAGCGACCAGGATCATAC
GACGTGGGCACAGAGATGACGCGCGTTCCAGCTTGAGGACTCGAGGCTTG
AACGACAAAGGAGGAGAGGAACGGATGGAGATGTGTACTGAAAGGGGCGT
CGCGTGTGGGGGAGGGAAGGAGAGGAACCAAATGCAGAAAATAAACAGGC
GAGGAGATCAAAAAGGTGCAGGTAGGAAGAGACTGCTTCGGCATTTTGGC
GGAGCCTATGTGTGAAAAGCGGATGTTTAGATTGAGGAAAGCATAGAGTG
CATAAGACAATTATTGATGGGGGAAGATGCAGGATAAACTGAATATTGGA
AGGGAAAGTGGTGGAGAAGAGCCGCTGGTGGAACACCTGGAGAGAGTCTA
GGCACGCGGAGTTGCAATCGACCGTCGCTCTATTTTGAGGCAAGCGAGAC
AAATGTCAAAGGTTTACTGTTCTGTGGAATCGCATATTTCCTTCGGCTGC
GCTTTTGTCCCCCTCCGCCTTGTTACCGCGGTGCCTGTCGCCTTCATCGA
AAGCCGTCCATGAATAGCCCTCCTGTCTGCGTCTCGCTCCTTAAATTGCT
CCCCTCTTTTCCCAAAACGGAGCCCCGTGCACACCTTTCTCGATCCGATC
CGTCCACTTCACCAGCCTGCTTGTCCCCGAGTGTCCCTCCTCCCTCCACA
TTCACAACCA

protein sequence of rna8937

>rna8937-protein ID=rna8937-protein|Name=rna8937|organism=Nannochloropsis gaditana|type=polypeptide|length=108bp
MALPCTTECCAPCCGIFSIIGFLFLIILGIIVDKQPIFVHGVTEPHRSAV
ACYGGAGIYAGTLALCVVAWMYDKKKKEHRAATAGLLKEEEHVSLNIQRP
GSYGATTR

mRNA from alignment at KK037250.1:522354..524634-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8937 ID=rna8937|Name=rna8937|organism=Nannochloropsis gaditana|type=mRNA|length=2281bp|location=Sequence derived from alignment at KK037250.1:522354..524634- (Nannochloropsis gaditana)
ACGACTAACTTACGCACAGGGCATTGTTTGATACCTTGGACTGTCCATCT
TAATTGCCAGGGTCGCCACCGGGGGAAGGGACGTCGGCGCGCAGGTTCAA
ACGGGCTGCCAAGAAGACAGCGAGTCTTTCGTGTGCGCGCGTTGGAAGTC
AAGACCGACGCGTTTGAAAGGAGGACAAGCAGGAGAGGGCAATGGCGCTA
CCATGCACGACTGAGTGCTGTGAGTATCCTGTCAGGGGGATCCTTTTCTT
CGATTCTCCCCCCCCCTCCTATCTTTCCGACTCTTCCCTGTGTTTTCTCT
TCCCCTCACTCCTGCGGGAATGCGCGGGCTGATATCCTCACATTTCACAA
TATTGCACACCGGAATGTTTGGTTCACTCAACAGGTGCACCGTGCTGTGG
CATATTTTCCATCATCGGCTTCCTCTTTTTGATCATTTTGGGGATAATTG
TTGACAAACAGCCTATCTTCGTGCATGGGGTAACTGAACCGCACAGATCA
GCCGTGGCCTGTTACGGAGGCGGTACGTGACGCGAGATGGTTAACAAGTT
GAGGGATAGATGAGAAGGCAAAGAGCCAGGGAATGACACGGTCTTGGCAG
GCTTTGGGGGATCGCGGGGGCAGAGCCTTCAAGGAAAAGAGAAGAGATGC
AGGCGGGACGTGGATTGCAGGACGCCACAACGATTATGTTCTGGTCTCAC
CCCTTTTCTTTTTTCTCTCTAACGATTGGCACAGCGGGTATTTACGCGGG
CACCCTTGCTCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGG
AGCACCGGGCCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCT
CTCAACATCCAGCGACCAGGATCATACGGTGCGACCACTCGCTAGCCCCA
CTTGACTAATAATGTAGGCGTACTCATGAACATTCCCCCTTTGAAGCCTT
TGTGTGAAGGAGAGGGACCGCGTGCTTTGACTGTCTTTCTTCTTGGTGTC
GAGCGTTTGTGTAATTTCGTCTAGCCGGGTGTTTGGAGCCATGGGTAGGA
GAGGAATGCGATGCATTGCGTGTAGGGGGGTGGCGAACGTCTGTATCGTG
CCTCTTGCTTCCTGTACCCCCCCCCAAGTCTGGGAGGAGTGTGCGTGGTT
GTGGACACGTGAGGAGGAGCTGAAAAAGTGCAGGAACATGCGGAGGAGCG
GGTGCCTGGGGGAGATAGATCGAGGAAGAAAGAAAGAGGCTGGGATCCAG
ACACCCTTTGAACGACCGCCACACCGCTTGTTCCTCGGGGCATGTCGATG
GGCGTCGCCTCTGAACACCTTCCCAGACCCTCGTTTTCTCCTCCTGTTGC
GTTCCCAAGATGGGAAGGAGAAAGGGATGATCCCTCCCTGGCGTTCGTGT
TGGTTTCCTCTTGCTTCCCCCGCCCCTTCCTTGTCTGTTCCTGTGCGTGC
GTACTCCATTTCACTCCACCCTTTGATGATGAGAAAACAAGACCTTTCCT
TTTAAGGGGTAACGGCCTGTGTCAGGACGTCAGCCTTTCCCATGCCAGCC
TTTCCTTCCAAATGGCGCTTTCAAACTCTCTCACGTCTCCCTCTTCCTTT
TTTTGGTACCCCTTGCCTACAGACGTGGGCACAGAGATGACGCGCGTTCC
AGCTTGAGGACTCGAGGCTTGAACGACAAAGGAGGAGAGGAACGGATGGA
GATGTGTACTGAAAGGGGCGTCGCGTGTGGGGGAGGGAAGGAGAGGAACC
AAATGCAGAAAATAAACAGGCGAGGAGATCAAAAAGGTGCAGGTAGGAAG
AGACTGCTTCGGCATTTTGGCGGAGCCTATGTGTGAAAAGCGGATGTTTA
GATTGAGGAAAGCATAGAGTGCATAAGACAATTATTGATGGGGGAAGATG
CAGGATAAACTGAATATTGGAAGGGAAAGTGGTGGAGAAGAGCCGCTGGT
GGAACACCTGGAGAGAGTCTAGGCACGCGGAGTTGCAATCGACCGTCGCT
CTATTTTGAGGCAAGCGAGACAAATGTCAAAGGTTTACTGTTCTGTGGAA
TCGCATATTTCCTTCGGCTGCGCTTTTGTCCCCCTCCGCCTTGTTACCGC
GGTGCCTGTCGCCTTCATCGAAAGCCGTCCATGAATAGCCCTCCTGTCTG
CGTCTCGCTCCTTAAATTGCTCCCCTCTTTTCCCAAAACGGAGCCCCGTG
CACACCTTTCTCGATCCGATCCGTCCACTTCACCAGCCTGCTTGTCCCCG
AGTGTCCCTCCTCCCTCCACATTCACAACCA

Coding sequence (CDS) from alignment at KK037250.1:522354..524634-

>rna8937 ID=rna8937|Name=rna8937|organism=Nannochloropsis gaditana|type=CDS|length=981bp|location=Sequence derived from alignment at KK037250.1:522354..524634- (Nannochloropsis gaditana)
CGGGTATTTACGCGGGCACCCTTGCTCTATGTGTGGTTGCATGGATGTAT
GACAAGAAAAAGAAGGAGCACCGGGCCGCGACGGCAGGTTTACTGAAGGA
GGAGGAGCACGTCTCTCTCAACATCCAGCGACCAGGATCATACGGTGCGA
CCACTCGCTAGGTGCACCGTGCTGTGGCATATTTTCCATCATCGGCTTCC
TCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTATCTTCGTG
CATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTACGGAGGCGA
TGGCGCTACCATGCACGACTGAGTGCTCGGGTATTTACGCGGGCACCCTT
GCTCTATGTGTGGTTGCATGGATGTATGACAAGAAAAAGAAGGAGCACCG
GGCCGCGACGGCAGGTTTACTGAAGGAGGAGGAGCACGTCTCTCTCAACA
TCCAGCGACCAGGATCATACGGTGCGACCACTCGCTAGGTGCACCGTGCT
GTGGCATATTTTCCATCATCGGCTTCCTCTTTTTGATCATTTTGGGGATA
ATTGTTGACAAACAGCCTATCTTCGTGCATGGGGTAACTGAACCGCACAG
ATCAGCCGTGGCCTGTTACGGAGGCGATGGCGCTACCATGCACGACTGAG
TGCTCGGGTATTTACGCGGGCACCCTTGCTCTATGTGTGGTTGCATGGAT
GTATGACAAGAAAAAGAAGGAGCACCGGGCCGCGACGGCAGGTTTACTGA
AGGAGGAGGAGCACGTCTCTCTCAACATCCAGCGACCAGGATCATACGGT
GCGACCACTCGCTAGGTGCACCGTGCTGTGGCATATTTTCCATCATCGGC
TTCCTCTTTTTGATCATTTTGGGGATAATTGTTGACAAACAGCCTATCTT
CGTGCATGGGGTAACTGAACCGCACAGATCAGCCGTGGCCTGTTACGGAG
GCGATGGCGCTACCATGCACGACTGAGTGCT

Synonyms

Publications