rna8930, rna8930 (mRNA) Nannochloropsis gaditana

Overview
Namerna8930
Unique Namerna8930
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1740
Alignment locationKK037250.1:511384..514664 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100188g11.2463.mrna
Orig protein idgnl|cribi|Naga_100188g11.2463
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:511384..514664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100188g11gene8659Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8930rna8930-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21780.1cds8900Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8930 ID=rna8930|Name=rna8930|organism=Nannochloropsis gaditana|type=mRNA|length=1740bp
ATGCTACTCCCGCGCAAACACTGCCATGGCATCTCCTTGCTAGCTTTTTT
TTTGTCCTTCTCCACAGCCTTCGTCTTTGTTCGGCCAGCCACCACCTCAT
TTTGCAATCCCACCCATCAAAGTAAACCATCAAGCACAGTCAAAGCCAAC
AAGACCCTGCCTCCACTGCCACAATCCTCTTCATCACCTCGTGGCCCCGT
GCGAAAAAATTCTCCAGATCCACCTTTTAAATGGCGTGGTGGTGCCTTCG
CTGCACGCATCCCCGGAACAAAGCCCAATCGGGTCCTGGCTTGGCTGCAA
ACATTTGCGCCTGGACCTGACGCCCCCCGGAAACAAAAGCTTGACTGGGA
CTTTCTCCGGATCGCCGCACCGGCATTCGTGCAATTCACAGCCGAACCAC
TAGCAGGATTGGTCGACACGGCATACTTGGGGCGGCTGGGACCGGTAGCT
CTTGGGGGTGTGGGAGTGGCCATCTCGGCGCAATATTCGGTGTCCAAGCT
CTACAATGACCCTTTACTGCGCACGAGCATCTCCCTGGTCGCCTCAAGCG
AGGGAGCAGACGTTGGAGAAAGTGAAGCGAGCAAAGCAAATGCCCTCTCT
CGGTCAGTCAGCACCGCCCTCCTCCTAGCGGGAGTTGTGGGTCTACTTCA
AGGGGTAGTGTACGTGTTGTGCGCCGCTCCAATCATTCGCGCCATGGGCG
TACTCCCCGGAAGCGCAATGTACGACCCCGCTGTCTCATATTTGCGCATT
CGAGCCCTGGGCACCCCTGCTGCCACGCTCTGGCTCGTTTCCAACGGTAT
CTTCCGCGGTCTCGGCGATACTCTGACCCCGTTGAAGTGGAGCCTTGTGT
TCACCGTCCTGAACGCGGCCTTGGACCCGCTGTGCATGTTCACGTTCGGG
ATGGGTCCTTCTGGGGCAGCCATGGGCACCGCAATCGCACAATACGTGGC
GTTGTTCCCCTTGCTCCTTCGAGTCCGGCAACGTGCCCGTGTCCGCCTCA
ATTTCGCCGACCTCCTCCCCTCCCTCGGCCAATACCTCCGTGCGGCCTCC
TTGGTCTTCGTCAGGACCTGGGGAAAGATCCTTGCCTACGCCTACTGCGC
TCGCCAAGCCGCTCTGCTCGGTGTCGTGGGAGCGGCTGCCTACAACCTGA
CGTTTCAGGTGGGATTTGCCACCACCCAGCTCTGCGAGTCCATCGCCATC
GCCGTGCAGTCCCTCATCGCCCGAGAGCTTGGAGTCCTGAAGGCAGCCAC
GCTGGCCTCCGCAAGTGGTACGGCCAGCATAAGGGAAGTGGAGGAAGCAC
GCGGGAACCTCTGGCACCTGATCAAGCGAGGCTGTGTCCTCGGTGCCATG
GTCTCCGGCGGCCTTTCCGTCGTCACGCTATGCAGCAAGTCGACGGTCAT
GCGAGGTCTCACATCCGATCTCTCCGTGCAAGCCACGGCATTGGCTGTCT
TTCCGCTTGTCATGGCCTGCCAGGTCAATAAGGGCCTCGCCTACCCCGTG
AACGGGATCATCATGGGTGGCCTCGATTGGGGCTTTTCGACCGTGACCAT
GTGGCTGGCGAACGTGATCTGTATCGGACTCTTGCTCTTGTGGAGTCCTC
ACGTGGGTTTGTCAGAGTTGTGGACTGCTTTAAGTGTCTTTATGGCTATC
CAGTGGGTCAGTGGCGTGATTCGCTTCGCGTCAGGCACGGGGGTATGGAA
ACTTTTGAGGGAACGAGGTGGGCGACAGCGTGCAAGGTGA
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protein sequence of rna8930

>rna8930-protein ID=rna8930-protein|Name=rna8930|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MAPLTRTHVFVGVIACCVLVGLVEAFLPAGVKQALHRRAGRVTLSTRPSK
PTLAAAKLVDPPPPLQARPDWLPKIPEGCDSDYECEGTESCCDFIFFKMC
CSDGGHTQEAWTPVPIPVRPGDGYQQGGGFGGNGGYSGGGGLYR
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mRNA from alignment at KK037250.1:511384..514664+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8930 ID=rna8930|Name=rna8930|organism=Nannochloropsis gaditana|type=mRNA|length=3281bp|location=Sequence derived from alignment at KK037250.1:511384..514664+ (Nannochloropsis gaditana)
ACAAGAAGGGTgtcgctctttctcttccactCTGAAAACTGCGAAACATT
TGGCCACGCGCGGGCACACGTCCACTATCTGGACTTACGTTGCACGTCTT
CCTTTTTGTGCATATGACGCGCTTTATCTTGTATTTATCTCGTGTCATGG
AAGTTGGTTTCGGAGCGAGGCGGTCTTTTAAGGCGGCGCCCTCTCCGCGT
GTAGAGCGTGTCACTCACGTGCTGATGCCTGCAAATACTTCGCCACGCCG
ACAGGAACACACTGAGCGACATCAGGCAATCGCAGAGCATTGTCTTACCG
TTCTGAGCGGTGAGCCTCACGTAAAAGAACTCGTACTTCCACGTCTTCAT
AAAAGCGGCGTAGACATTAAATTGGCGTCGTGAGTGAAATTTGCCTGGAA
AGAACCCGCGTTTTCTGCTTCGGGTTATCTTTATAATAGAATCAACGACT
CTGCCACTTGCCAACATCACTGCATCATGGCACCATTGACACGGACACAT
GTGTTTGTTGGCGTCATTGCCTGCTGTGTTTTAGTTGGACTTGTGGAGGC
TTTTCTGCCGGCGGGCGTGAAACAGGCGTTGCACCGTCGCGCCGGACGAG
TCACACTTAGCACCCGGCCTTCAAAACCTACCCTGGCCGCAGCAAAATTG
GTCGACCCGCCACCACCCTTGCAAGCTCGTCCAGACTGGTTGCCAAAGAT
CCCTGAAGGTTGCGACTCGGACTATGAGTGCGAAGGAACCGAAAGCTGCT
GTGacttcatcttcttcaagATGTGTTGCTCCGATGGAGGGCACACGCAG
GAGGCGTGGACCCCGGTACCCATACCGGTGAGGCCTGGCGATGGTTATca
acaggggggagggtttgGCGGCAACGGAGGCTACTcaggcggcggaggcc
tCTACCGATGAAGAGAgcagagggacgaggaggggaggggggcccgTCCT
TAAAGCTAACGAGCGCGTCGGTCGATAGTTTGAGTGGATTCTATTGTGTC
AGGTTGACACGTACTAGCATTGTTGTGATTTTTGTAGGAATTTTTGTACA
TAGCCCGACCCCACCACTGGAGTCAAAAGTTCCTGAGGGTGCCAGTAGCG
GCAGTGGTATGCCACACATTTCTCACGGTTTTGTCATCAAGTACTTTGCC
AGCTGTCGTGCCCTTGTTTTGGCAATGGTCCTCGTTCAACTCGTCAGTGT
GCGAGGAATGGAACGACGCAGACGCGGACTGTGGTAAAGCAGCGTGAGAC
ATCAAGATCGGAAAGAACTGTCTTCTAGTGTCATAGGTCTTGCGGACTGT
CTTCTTGTGTCGTACGTCTTGCGGGACCTCCCTCAGCAATGAGGAGCAGA
TCGTTATGATTGAAACGTTTGAAGCAGGTGATCGATTCAAGTGGCACAGG
CAGGTCAAATGAGGTGTGCGCGTGGTGTAGCGCCTTAGCCTGTCTCTTGT
AGTCATCCCTTTTTGTAAATAGTCGAGTCGGAGAAAGGTGGCCTTACGCC
CCGTGCTCGAGATACTCTCATGTTCATACGCGACGGAGATTTGATTTCAA
GTATTTTACAGATTCTGTTGGGTAGCAATTAATAGCGAAAAGGCAAGTCA
GCTCACGGTCCTGGGTGAGGGTCTGAAGAATGACTGGACTTGGACAAGAG
TCGAGAGTGCTGAAAGGACGGATGCCAAAGTGAGGCCAGACGTGGACAGA
TTTGGCGCCCTTTCCGGCGCCCTTCTGCATTATGAAGCCTTCCATCCGTT
CTTGGCCCCAAAAAACATCCACCATGGCCGTGGTTGTCGCCGAAAAGCTG
AAATAATTACAGTAGCCAATGCTTTCGGCATGGCTTGGACTGCATGATAT
GTGGTTTGGTTCTTCTGTACAAAAGTCCTTCACATTAGAGAGAAAGGTCG
CGGGGAGATGGATAAAATGAAAACAAGCACTTGTTTCGATGGACTGACTT
TCTACACCAGTAAATTTTTCGGTTTTTGCGTACAGAGAATGTTTATCTCG
CATGGCTCAAGTTTGACTGTGAGCACTTTGAACGCGTAACGACTGATATT
CACCCCAAGacacctttctcctccagcaggccctccacgtcttcgCACAA
GAAGGCTGCACCCAAACACGCATCCACTTGGGCCACACATTCCTGtactt
cccccttctcatATACCAGTAGCATGGGAAGTGCTGCGGTGTCTAAACGT
AAATTGCTACGGGGAAGATTGAGTCCTTGATGGAGGCGCAGAAAACAAAC
GGCAGGATAATTTCGAGCCAGATAAGGTAGAATGGAATTTAGGAGTCGGC
AAGCGGGAAGATGAGGCTCGTAGACGTGCACGACAACCTTTGTTGTAGGA
GAGGATTCCAAAAGGGCATCAATCTTATCGACCATATCTGTCCCTGAAGT
TTCTTCGACCTCTCCAAACAGGATACGGGGTCTTACGGCCGCTTGCTGCA
CTGATAGCTGCTTCATATCTGCCAGCCAGCGCACGCGTTGCAACTCAACG
AAGTCATCATCTCCAGCATTGATTGATGGGCTGTCTTCATCCTTTGAATC
CAAGATGTTCGGCCAGCTCGAGGACTCTATCCTTGTTTTTGATTTGCTGG
TACCGCCGTCTGCGATACGAAAAAGCACATATTGTCGATGCTcgttttcc
tctcttttcaagTCCTGCATAGCCTTAGCATGGGCTTTATAATCTGCCAA
AACACCTTTGGGACCAGTTTTAGAGCCAAATCTATCACCGTGTCGGTTCG
GAGGACATCGCATTTCCATGATGCAATCTTCTGCATTAAAAGACCATGGc
tgctcgtcctcgcccttctcAAAACCATCTGAAACAGCGTGGTGACCATC
TTCGGTCCAACTTGTGTAGCGACCCGGTACATTGGACTGGAAAAATGTGT
TTTCTAATGTAGCACCTTTACCGTTCATGCTTGAGTTGTCGTCCTAAGGG
GATATGGGTCAAAAGGTTTTCTTTTTTTAGGATTCTGCAACCCCCCAAAT
AGCGCGTAGAAAGTATAAATGGGCCCACCACAAGGATTACATATGTCTGT
CCAAGCTTGTAAAAGATAATTCCGTTTGATAATCGCTGTATGGTGGAAAC
CGCTTGTTGACAAACATTCGCTTGAGCCGCTTTCAGGACATTTTGTATGA
AAAAGACGGAACACATCACAAAACTTCAACTTTTCGACACAAAAACCTCC
TCTATGTGAAAAACATGACATTGAAAAATGTTAGGACGAGTCCATCAATC
AAGTTAAAATAAACACACATCGTTACAAACA
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Coding sequence (CDS) from alignment at KK037250.1:511384..514664+

>rna8930 ID=rna8930|Name=rna8930|organism=Nannochloropsis gaditana|type=CDS|length=435bp|location=Sequence derived from alignment at KK037250.1:511384..514664+ (Nannochloropsis gaditana)
ATGGCACCATTGACACGGACACATGTGTTTGTTGGCGTCATTGCCTGCTG
TGTTTTAGTTGGACTTGTGGAGGCTTTTCTGCCGGCGGGCGTGAAACAGG
CGTTGCACCGTCGCGCCGGACGAGTCACACTTAGCACCCGGCCTTCAAAA
CCTACCCTGGCCGCAGCAAAATTGGTCGACCCGCCACCACCCTTGCAAGC
TCGTCCAGACTGGTTGCCAAAGATCCCTGAAGGTTGCGACTCGGACTATG
AGTGCGAAGGAACCGAAAGCTGCTGTGacttcatcttcttcaagATGTGT
TGCTCCGATGGAGGGCACACGCAGGAGGCGTGGACCCCGGTACCCATACC
GGTGAGGCCTGGCGATGGTTATcaacaggggggagggtttgGCGGCAACG
GAGGCTACTcaggcggcggaggcctCTACCGATGA
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Synonyms
Publications