rna893, rna893 (mRNA) Nannochloropsis gaditana

Overview
Namerna893
Unique Namerna893
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length327
Alignment locationCM002456.1:662790..663103 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100022g2.839.mrna
Orig protein idgnl|cribi|Naga_100022g2.839
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:662790..663103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100022g2gene856Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna893rna893-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29740.1cds893Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna893 ID=rna893|Name=rna893|organism=Nannochloropsis gaditana|type=mRNA|length=327bp
ATGATGACACCAATCCACAACGAAGACAGCGCGTGGAAACACGATCTGCG
TCGTCCCCGTGACACACTAAGACCTCTCGACATCTCCTGCATACATCTGC
AGACGACAAGAGAGCATCAGGGGCTAAGGGAGACATGGAATAGCGTCAAC
CCATCGACAGCGCATTCCATATTCTCCCTAAGTTCCCCTGTGGAGCGATT
GCTTCGATCAGTGAAGATCACCTGGCCCTTTCCTCACCCTTGTGGCGACG
GCTGCATTTGTGCACTGTTGCCCCAAGAACTATGCATCGAAGGCACACGC
CCTGGAAGCCCCGACACCTCTGTTTGA
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protein sequence of rna893

>rna893-protein ID=rna893-protein|Name=rna893|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MSESVRHPTSFLLSKNIAHCVRTHSTVKSHVRYNKTIFYYGKVCMLRRKE
HNALRGMHRLSYLFERQLTSMC
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mRNA from alignment at CM002456.1:662790..663103+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna893 ID=rna893|Name=rna893|organism=Nannochloropsis gaditana|type=mRNA|length=314bp|location=Sequence derived from alignment at CM002456.1:662790..663103+ (Nannochloropsis gaditana)
ATGTCCGAGTCCGTCCGTCACCCGACGTCCTTCTTGTTGTCCAAGAACAT
TGCACACTGCGTCAGGACACACTCAACAGTCAAATCACATGTTCGTTACA
ATAAGACAATATTCTATTGTACCATGTCGACACTACAAAAGAACACACAC
ATCTCTCGATAGATTAATTCGAAACCGATACGTTCCTATAATCCCTTGGG
CGCACTGATGGAGATGGCAAGGTGTGTATGCTGCGACGCAAAGAACACAA
TGCATTAAGAGGAATGCACCGCTTGTCATATCTTTTTGAGAGACAGCTCA
CTAGCATGTGTTAA
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Coding sequence (CDS) from alignment at CM002456.1:662790..663103+

>rna893 ID=rna893|Name=rna893|organism=Nannochloropsis gaditana|type=CDS|length=438bp|location=Sequence derived from alignment at CM002456.1:662790..663103+ (Nannochloropsis gaditana)
ATGTCCGAGTCCGTCCGTCACCCGACGTCCTTCTTGTTGTCCAAGAACAT
TGCACACTGCGTCAGGACACACTCAACAGTCAAATCACATGTTCGTTACA
ATAAGACAATATTCTATTATGGCAAGGTGTGTATGCTGCGACGCAAAGAA
CACAATGCATTAAGAGGAATGCACCGCTTGTCATATCTTTTTGAGAGACA
GCTCACTAGCATGTGTTAAATGTCCGAGTCCGTCCGTCACCCGACGTCCT
TCTTGTTGTCCAAGAACATTGCACACTGCGTCAGGACACACTCAACAGTC
AAATCACATGTTCGTTACAATAAGACAATATTCTATTATGGCAAGGTGTG
TATGCTGCGACGCAAAGAACACAATGCATTAAGAGGAATGCACCGCTTGT
CATATCTTTTTGAGAGACAGCTCACTAGCATGTGTTAA
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Synonyms
Publications