rna8921, rna8921 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8921
Unique Name	rna8921
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3093
Alignment location	KK037250.1:490593..492666 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100188g2.2458.mrna
Orig protein id	gnl\|cribi\|Naga_100188g2.2458
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:490593..492666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100188g2	gene8650	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8921	rna8921-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21775.1	cds8891	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:490593..492666+
coding sequence from alignment at KK037250.1:490593..492666+

mRNA sequence

>rna8921 ID=rna8921|Name=rna8921|organism=Nannochloropsis gaditana|type=mRNA|length=3093bp
ATGGCCTACACCGGGGCGGACGTGGAGCTGGCGGAGGCGGAGGCGATCTG
GCGGGGTCTGGAATCCGCCGATGCCTTTCGACGAGCATGGATCCGACGGC
CCGACTCGGCATTGTCTCGGCTTGTGCGCACGCGGGTGTATCAGGAATGG
CCCCGGCGGCTGTGGTGGCAACGGGAGGCGGAGGCCCGCATCGCGCAGCA
TCATCTCCGTGTACTCCAAGTGCGGGCTTTGGCCGGGCTCTGGCGCTGGC
GTGCCCGCTCCAATGAGGCCCATGCCGCCCGGAAGGTCTCAGCATATACC
ACCTCGGGGATCCAGACCCGGGTCTGGGGTCGGTGGCGCCGGGTCACGCG
GCGGCTGCGGCATCAAAGGCGTCTCCGGGCCGTCCGTCTCCTGCGACGCG
TGCGAAACGGGCTCCACGAATGGCAGGCTTGGGCGGTAAATCGGCGGAAA
AGAAGGGAAAGCCTAAAAGAAATGGAGGCCCGCAGACTGTCGCGTCGCAC
CCTTCGGGCGTGGCACAAGGCTCTGGCCAAACAGCGCTTTATGGGCGCGG
TGGATCGGGAAGTCAACGCCTCTCTTTGGGCCTCGGCGACTGGGGAAAGG
GACGGCAACATGCACGATGGAATCGACAGGGAGGCTGTCGCCGCGTGCGC
CAAGGCGGATCGGCTGTGGCGCTCGTTCGTCTGGCGGCGATGGCGACGGC
GGGCACGGTGGGCGAAGGCACAAGAGCAGGAATGGGTCAACAAGGTGGAA
AAGGCACATCAATTGGCCGTAGTAGGAAGAGGCTGGAGCGAATGGCGTGC
GGTTTGGAAGAGACGCGAGTTGGAACATCGTCTGGGGGGGCGTGCGAGGG
ATGGGCGAAGTACGCAAGTGCCGAGGAGTTTGTGTCGACTCGCCTCCCGG
ATCGAGAAGCATGCGTTGGCCCGCAAGGAACACGCCTTCGTCCGGTGGCG
GCTGGAGACGTTGTGGGCACAGGAACGAAACGATTTAGTGGAGCGCTTGG
TCCTTATCCTGATTCGGGGGCACCGACGGCGGGCGTTGCGGGAATGGCAA
TCAAGGGTCGTTCAGATGGCGCGAAATGAACGCACTCTGGTCAAAGCCAA
ACGCCGGTATCGAAAGCGGATGATGGAACAGGTGCTGTGGGCATGGGCGT
GCCTGGCCAAGCGGGAACGGGCCCTGCGACAGACCCAAGCGACCGTGACA
CAGCGGATACGCCAACAGCGGCAGCGTTGCGTCCTCCTCGCCTGGCGTGG
GGCGTGGCAAGGCCGGCAGGTGGAGGCAGTTGCGGAAACGCAGACACGCA
GGCACCTGCAATGGTATGCGGCAACGAAGGAGCGGGAGGCCTTGAAACGG
GTCTTGCGACAGTGGGTAAGCTGGGTGCGCAGGAAGCAGCGAGAGGGGCT
AGGAGGCGGCCAGGCGGTGGGATATCAGGGGGGCCTGGGGAGTATGGGCG
GGTCTGCGGTGACTGGTTATGGTGTTTCCTTGAGGAAAGCTCGAGGGGGA
AGGGATGGGAGGAACGGTGGGAAGAAGAAGAAGGACTGCGGAGGAGCCCA
GCGTAAGCCAGAGGGCGGTAGGCATCAGGTCCTGCAGCAAGTTGAAGGAG
AGCTGTCGGAGGAGGCCGGCCAGGGGGAAGACCTTGGAATGCATCTGGGG
CGTATGCCAGAGCAAAGGAAAGGAAGATATCGGGGGCAAAGGGAGAGGGA
GCCGGGACGGAGGCCCTCCGGCCACATCCGGGAACCTCGAAAAGGGGCTG
TCAGGACCAGGAAGCTCCAAGGACTTTCCCCGCAACTCCAGGAAGATCTC
AGAAGGAAGCGACGACAATTGGAGGTCGAGGAAAGTAATAGGGTAAATGA
AACCTTCCACAACACCTTACTTCTATTGAAAGAGCTGTCTGCGGAGGCCG
AAGGAGATGATGTCAGAGAGGGCATGCAACTTGATGAAAGACCTGAGCGC
CATGTCGCCGGAAATAAGATCGTACCCAGAAATCAGATTGAAGAGTTGGT
GGAGGGTTTTGGACGGGCGGAGCAAGGCCGAGAAAATTTCGGGGAAGAGA
CATCACACCGGGAGCTGGCAAGTGCGGAAGACGAGGTCCGTAGGTTGCGC
GCGTTGGTAGCAGATCTTGAAAAATCCGCTCTTGGAATTGAAGGGGTCGA
AGGGCATAGAAATTCTCCTGAGACCTATCTAGAGTGCAAGGCGCAAAGTA
TGCACCGGGAAAATTGGATGGTGCAAGAATTGGAGGAGCGAACGCCAATT
TGGGCACTCGATGCGGATCTCCCGGGATTAGCAGGAAGATCAATTGCCAA
CGAGACTCACATGGAGCGGATTCCTTTAGGGCCATTGCAATCCCGCAATT
TGCAAGGCATCGCTTCTGGTACGGGCGCCAAATGTCTGATTGACGTGTTG
CCAGATTCGCCTGCACAGTTTCAGGAGCATTGCGAGAAGGAAGTGGGCGC
AAGTTACCTCGATGACGAGGAAGAGACAGACCTGGAGGCTCTCGAAGTCA
TGCGCGGGGAAATATCCCTCCTGGAGCATCGTATTAAATTTCGATTTCAG
CAAAAATCTGCACGGGGAGAGATTTGTGCGGCATAGATAACCAGACTGTC
ACAAGGCTTGTCGCTGGAATGATTGTCGACGCAATGGATAGCAGCTCAAG
AGCGAAGCTTGTACACACTGTACCAAGAAATTAAAAAACTTTAAAGTGTA
ACATTTCATTGGATACTGACATAGACACGATAATGTGGCGTTTTTTTGGG
GGTTCGAGTGAAATCTCTGAGCCATCCAATGGGGAGGTTGGGCTCGAGTG
AGAGCGGCACGGTAGCGATTCCTGCCGTTAAATTCGGACTGAGGTGTGTC
ACCTATAACAAGCTTACGTGGGCTCTCGCACATTTGTAGCGACCACATGC
GCGACCAATATCCCATATGTCTGTCCATATCTTTCATTCAGTAAGGACGA
GCGTATAGAATTTATAGGCTCGTGTCATGAATGCCTCCGATACATCGCTC
TAGGCAAAGTGCGTAAGTGTTGCTCTCGTCTCCTGGTGCATAGCTAGCTT
CCGTGCTTGTAAATTACGATTTTCTTCGCTACATTTTATCACC

protein sequence of rna8921

>rna8921-protein ID=rna8921-protein|Name=rna8921|organism=Nannochloropsis gaditana|type=polypeptide|length=412bp
MPSVAAPLCAASNSKSVMSSILSAPAAWAADSVSLPAKKESPNKATSSTP
LKKRKSSHDDTLSPGITSSEPPIRRPKYAPTALSPGKISAAVTGAGHHKK
VLPTIIRIVGACNESPRMGVKRRALTAHPSSCKRVKSMVAEVVHPHGQDT
QPPPPPRPLEEPFILGVPPTCSNNNSSSGKNGNNSSRVAKAMKDIDMQVK
SSNGSMNGSPSSGSVNSVSTPSKCTLSLRSSSQGSISPPTLRGRGSAAKE
QPAPEPVPVVLTEVMEDAMDRISTRLLADDLAGMAQLLSFVAQAQVQCQE
HLELFNMAMKKVNEAPALRKDFCDFEKVWSCVDVVYGRRPSAIFADLIDP
RFPVVHTYHQHIFLRLFMHYAVTRLQLLRDMVMEKSGGPDVEEVGLVDTF
LKFWFQRAPAYL

mRNA from alignment at KK037250.1:490593..492666+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8921 ID=rna8921|Name=rna8921|organism=Nannochloropsis gaditana|type=mRNA|length=2074bp|location=Sequence derived from alignment at KK037250.1:490593..492666+ (Nannochloropsis gaditana)
CGATGCAGCATACAATTGAGCGACATTAatagagaaaaggaagggaatcT
GTGGGATACGGCCATGTTTGCGTGTGCTATCCATACGTTGGAAAAGACCG
CTGCTTGTGCCCTCTTTATCCGCTCCTATATACTTATCCGTGTGATGTCG
TACAGAATTGAATTGACTCATCTTGGGATTGACACTCATCTATCACTTAC
GTGCAACATTCTTTATCGCTACCCCATTCGCTCGCAGAGTCCTAATAGTC
GCACCAAGTTAGTACCCGTTTTCGCATCCGACGTACAAAATGCCATCTGT
CGCAGCGCCACTCTGTGCAGCTAGCAATAGCAAGTCTGTCATGAGTAGTA
TCCTATCTGCACCAGCGGCTTGGGCTGCAGACTCTGTATCGCTCCCAGCC
AAAAAAGAGTCTCCAAACAAAGCAACGTCATCAACGCCGCTCAAAAAACG
GAAGTCGTCGCATGACGACACGCTTTCTCCCGGCATTACGTCTTCCGAGC
CTCCCATCCGACGCCCAAAATACGCGCCgaccgccctctctcctggaAAG
ATTTCCGCGGCTGTCACGGGCGCCGGGCATCACAAGAAGGTCTTGCCTAC
GATTATCCGCATTGTCGGCGCCTGCAATGAAAGCCCCAGAATGGGTGTCA
AACGCCGGGCCCTGACCGCACATCCCTCTTCTTGCAAGCGGGTAAAAAGC
ATGGTTGCCGAGGTTGTACACCCCCATGGTCAAGACAcgcagccgccacc
gcccccaagGCCCCTCGAAGAACCCTTCATCCTCGGCGTCCCCCCCACgt
gcagcaacaacaacagcagcagcggtaAAAACGGCAACAACAGCTCCAGG
GTAGCCAAAGCAATGAAAGACATCGATATGCAAGTCAAGAGCAGTAATGG
AAGCATGAACGGGAGCCCTTCGTCAGGCAGCGTCAATTCAGTCAGTACGC
CGTCCAAGTGCACATTGTCTTTGCGATCCTCTTCGCAAGGAAGCATAAGC
CCACCCACattgagagggaggggctcggCAGCAAAAGAGCAACCGGCACC
GGAGCCAGTCCCAGTGGTTCTTACAGAAGTCATGGAAGATGCCATGGATC
GGATCTCCACGAGGCTCCTCGCAGACGACTTGGCCGGCATGGCCCAGCTG
CTCTCCTTCGTCGCTCAAGCTCAAGTACAGTGCCAGGAGCATTTGGAACT
CTTTAACATGGCCATGAAGAAAGTAAACGAGGCTCCTGCGCTACGAAAGG
ATTTTTGCGATTTCGAGAAAGTCTGGAGCTGTGTGGATGTCGTGTATGGG
CGGCGACCCTCGGCGATTTTTGCCGATTTAATAGACCCTCGTTTTCCTGT
GGTACACACGTACCACCAACACATCTTCTTGCGCCTATTCATGCACTACG
CTGTTACACGCCTGCAACTGCTGCGAGACATGGTGATGGAGAAAAGCGGG
GGTccagacgtggaggaagtaGGCTTGGTAGATACTTTCCTAAAGTTTTG
GTTCCAACGGGCCCCTGCATACCTATGAGACTGAGGGTCTCACACAGACA
AGCCTTTCAGGACACACGTGCTTCTTCCTGCCTATTTAATAGGGGTATGG
AAATTCTGGCTACCAGGGTAAAAACCATCTTAAAATGGCTGAAAACTTTT
GTCGTCCCGCTATGGGCGAGTAACCGCTATTTGAGAGTTATGAGTACGAA
AATTACATATACTTTTTTATATTTATATACAGACGGGACTTTATGAATGA
GAAATTAGGCTGAAAAGAATGGCAATCGGGTCGTCTAGCCATAGAATTCT
GCCAATGGCTATATAGCCCAGGGGTATCGAACTTTTAAAATATGCGTTAT
CAAGCTGTGTCTCACACCTTCATATATCCGTATTGGGGCAGCAGCTGCTT
GCTCAAGTCAAGTATGCGCTTTGTAAAAAAGGCTACTCCGCACATACGTG
GAAAATACCAAGCGGATTTGCTACACAAACGCACTATAATGTTGGTCATA
ACATCAAACGCGCTGTCTAAGCTTGTAGGCAATCATAATGATAAAGTGCT
TAGTGAAAAAGAAAGATCTTTATC

Coding sequence (CDS) from alignment at KK037250.1:490593..492666+

>rna8921 ID=rna8921|Name=rna8921|organism=Nannochloropsis gaditana|type=CDS|length=1239bp|location=Sequence derived from alignment at KK037250.1:490593..492666+ (Nannochloropsis gaditana)
ATGCCATCTGTCGCAGCGCCACTCTGTGCAGCTAGCAATAGCAAGTCTGT
CATGAGTAGTATCCTATCTGCACCAGCGGCTTGGGCTGCAGACTCTGTAT
CGCTCCCAGCCAAAAAAGAGTCTCCAAACAAAGCAACGTCATCAACGCCG
CTCAAAAAACGGAAGTCGTCGCATGACGACACGCTTTCTCCCGGCATTAC
GTCTTCCGAGCCTCCCATCCGACGCCCAAAATACGCGCCgaccgccctct
ctcctggaAAGATTTCCGCGGCTGTCACGGGCGCCGGGCATCACAAGAAG
GTCTTGCCTACGATTATCCGCATTGTCGGCGCCTGCAATGAAAGCCCCAG
AATGGGTGTCAAACGCCGGGCCCTGACCGCACATCCCTCTTCTTGCAAGC
GGGTAAAAAGCATGGTTGCCGAGGTTGTACACCCCCATGGTCAAGACAcg
cagccgccaccgcccccaagGCCCCTCGAAGAACCCTTCATCCTCGGCGT
CCCCCCCACgtgcagcaacaacaacagcagcagcggtaAAAACGGCAACA
ACAGCTCCAGGGTAGCCAAAGCAATGAAAGACATCGATATGCAAGTCAAG
AGCAGTAATGGAAGCATGAACGGGAGCCCTTCGTCAGGCAGCGTCAATTC
AGTCAGTACGCCGTCCAAGTGCACATTGTCTTTGCGATCCTCTTCGCAAG
GAAGCATAAGCCCACCCACattgagagggaggggctcggCAGCAAAAGAG
CAACCGGCACCGGAGCCAGTCCCAGTGGTTCTTACAGAAGTCATGGAAGA
TGCCATGGATCGGATCTCCACGAGGCTCCTCGCAGACGACTTGGCCGGCA
TGGCCCAGCTGCTCTCCTTCGTCGCTCAAGCTCAAGTACAGTGCCAGGAG
CATTTGGAACTCTTTAACATGGCCATGAAGAAAGTAAACGAGGCTCCTGC
GCTACGAAAGGATTTTTGCGATTTCGAGAAAGTCTGGAGCTGTGTGGATG
TCGTGTATGGGCGGCGACCCTCGGCGATTTTTGCCGATTTAATAGACCCT
CGTTTTCCTGTGGTACACACGTACCACCAACACATCTTCTTGCGCCTATT
CATGCACTACGCTGTTACACGCCTGCAACTGCTGCGAGACATGGTGATGG
AGAAAAGCGGGGGTccagacgtggaggaagtaGGCTTGGTAGATACTTTC
CTAAAGTTTTGGTTCCAACGGGCCCCTGCATACCTATGA

Synonyms

Publications