rna891, rna891 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna891
Unique Name	rna891
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	741
Alignment location	CM002456.1:656683..659994 +

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100017g88.321.mrna
Orig protein id	gnl\|cribi\|Naga_100017g88.321
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:656683..659994 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g88	gene854	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna891	rna891-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29823.1	cds891	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:656683..659994+
coding sequence from alignment at CM002456.1:656683..659994+

mRNA sequence

>rna891 ID=rna891|Name=rna891|organism=Nannochloropsis gaditana|type=mRNA|length=741bp
ATGAGAGCAACGAAACGCGTGGGGGCTAGTTATCTGGGTCTCATTCTGTT
GTCGAGCCTGCACCAGGTCGCCGCCTTCAGTCCGCTTGCAGTGCCAGGGG
CTTCGAGTGGGATGCTTTCGACACATTCTCGCGGGACACTGAAGGTGAAG
CCGTCGCTGCCATGTAGAACGCTTCTATCTACAGTCTCGGAATCGACAGA
TGCGCCTTCGTCCAAAAAGACGGCACCCACAATGGAGAAAGATGTGTTGA
AGTCGGAGTGTGGGATGGACTACGTGCCCTTGGCCAACATGTTGCTCATC
GGCGACTTCAAAGGAGCGGACCAGTTTACGCGGGATGCCCTCATCCAGAT
AGCGGGGGAGAATGCGCGGAAACGGGGCTACGTGTATTTTACTGAAGTGA
AGGGTCTCCCGGAGGCTGACATGGCGACCATCGAGAAGCTTTGGCTCAAG
TACAGTAAAGGAAAGTTTGGGTACACGGTCCAACGCGCGATCTGGAACCA
AGTGACAGTTGGCAAGGATTTCGAGCGTTTTTGTCGGAAAATTGGGTGGA
ATACGGTGGAGAACGGGATTGAACGCAAACTCAAGTGGTTTGGAAAGTCA
GAATTTATTTATGATTTGGAGAAAGCGCCGGTTGGTCATCTGCCGCTGAC
TTCCGCGCTTCGGGGGACTTCTCTCCTGAAAAATCTGTTGACCTACCCCC
TATGGGCTACCGAGTGGAACAAGGAGGAAAAGAAAGAATAA

protein sequence of rna891

>rna891-protein ID=rna891-protein|Name=rna891|organism=Nannochloropsis gaditana|type=polypeptide|length=1103bp
MPVIMVERSSSKATLICAMLCAATVTAQAFIGPSTPCFKPWILRLSHRLH
EASNNQAGTAPPSSQAIAPSKKPSSSFISKTIPPSASVGDLLEYLGDHST
RRRAARRLLRQSEQVPADGLVALLKATCRLGNTNGSQKILAMLRETGTQP
DAALYEALLRIANKRYMWDLSLALLCEAEQRDALTLTSAMLGGTLYTCLQ
CARAQEAVKLLKRFEQHGATPGSNLMVLMVRLLSDKNMVPALREVRKAIG
ALSVEGDARLYTELVSAFGRASSYDDVVASARLVEGTGVVEKGRIYSTAV
ASLLKGNLTAPARKLYIQALEDGAVIGGKGFEALVAGAAASTDPLEGVFY
LNEMRKHVASAPASEAEGSMEKGLLVPAHVYRRLIGACLRSRHLSEAADL
VIEYYSQSPAAFADAVPFNNLVKAICDAGSAQDRALAVQVFEALSAVQPA
GAFVGNSFTSMVLIGAYRRVQELDKIVAMHESMRRADVDVWLPAAGNIMH
AYARQGKVEEELDTFQALAASPAQVVLGESRKHLGAKGKRKKTPFAANPS
PLLASSTVEAPSSSKEEKHLFLWSRILSRAMYLSAELGRLDVASLVLALL
QKYSGLRAASPADYMNLIKAFGQAKRPGDALRVLHVMNQGKGDAKPSTLH
YNAVLHAFSRVERLEEAEAVFQEMRMRQVPMDSTTFNMLISGFERARQPD
RALALYDEMERRGIPVDKYVLNSLISVTADLRNRTLANGLLTRLRTLAGD
PQETWNDVMFGAHMHALVKADVASRREALALLETFKSGGRTPNTIMYNEA
LHATYRLVREDPEGMAEKALGLYHEMLAQGQASAPSPLTYRRLFKCLKQA
CRFQELVDVAASLPREMLVSQERLGIPVIVASLRAGQPDRARDLLGDLVL
KPNTSYSTYRWATFIYCAKLDPPDVAAAETIIGLVEEQGWKPDRGFYASL
LRGCWLSAPKQIEKAFDVYHNMPLEYQGGDPAAVAALCHVDRGRLDRVTE
LLRAMRERNDVAAPDLLATLLGNLLSCESWKNALSVVELMIDFDIALTPP
QRRKITSLVHANPKGPALEVLEGLGLLRVRNGDHANGGMDADLAGREEEG
EKE

mRNA from alignment at CM002456.1:656683..659994+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna891 ID=rna891|Name=rna891|organism=Nannochloropsis gaditana|type=mRNA|length=3312bp|location=Sequence derived from alignment at CM002456.1:656683..659994+ (Nannochloropsis gaditana)
ATGCCCGTTATTATGGTGGAAAGATCATCTAGTAAAGCAACACTCATATG
CGCGATGCTCTGCGCTGCCACTGTCACTGCACAAGCATTTATCGGCCCCA
GCACTCCCTGCTTCAAGCCCTGGATCCTGCGCTTATCTCACCGACTGCAC
GAGGCAAGCAACAACCAGGCTGGCACAGCCCCACCGTCCTCTCAGGCAAT
AGCTCCCTCAAAgaagccgtcctcctcatttaTCTCAAAGACCATTCCCC
CTTCGGCCTCTGTCGGTGACTTGCTCGAGTACTTAGGGGACCATTCCACA
CGCCGAAGAGCCGCACGCCGGCTTCTGAGGCAGTCAGAGCAGGTGCCAGC
AGACGGTCTCGTCGCGTTGTTGAAGGCAACTTGCAGACTCGGAAACACAA
ATGGGTCCCAGAAAATTCTGGCCATGCTGCGGGAAACGGGCACGCAACCG
GACGCGGCCCTCTACGAGGCCCTCCTCAGGATCGCCAACAAGCGCTACAT
GTGGGACCTGTCGCTTGCTCTTCTCTGCGAAGCAGAGCAAAGAGATGCCC
TGACCTTGACGTCGGCCATGCTTGGTGGGACGCTTTACACGTGCCTACAG
TGCGCGCGAGCTCAGGAGGCTGTCAAGCTATTGAAGCGCTTTGAACAGCA
TGGGGCCACGCCAGGGAGCAATCTGATGGTGCTGATGGTACGGCTGCTGA
GTGACAAAAATATGGTGCCAGCCTTAAGGGAGGTCCGAAAAGCCATTGGC
GCGCTGAGTGTAGAGGGCGATGCAAGGCTTTACACGGAATTGGTTTCGGC
CTTCGGGCGCGCGAGCAGCTATGACGACGTGGTGGCGAGCGCgaggctgg
tggaggggacgggtgtggtggagaagggtAGGATCTACAGTACGGCGGTA
GCGTCGCTGCTAAAAGGAAATTTGACTGCCCCTGCACGGAAGCTGTACAT
CCAAGCGCTTGAAGATGGTGCCGTAattggagggaaggggttcGAGGCCC
TGGTGGCCGGGGCGGCCGCCTCGACCGACCCTCTGGAGGGTGTCTTTTAC
CTCAATGAGATGAGGAAACACGTCGCTTCCGCACCTGCCtctgaggcgga
gggaagcatGGAGAAAGGCCTGCTCGTACCGGCTCACGTCTACCGGAGGC
TTATAGGCGCCTGTCTTCGCAGCAGGCACCTTTCAGAGGCCGCAGACTTG
GTCATCGAGTACTACAGCCAGAGCCCCGCCGCTTTTGCTGATGCCGTCCC
TTTCAACAACCTGGTCAAGGCGATCTGCGACGCGGGTTCCGCGCAGGACC
GGGCCCTGGCTGTGCAGGTCTTCGAGGCCCTCTCGGCCGTCCAGCCCGCC
GGAGCTTTCGTCGGGAACTCGTTCACCAGCATGGTCCTGATTGGAGCCTA
CCGGCGGGTGCAGGAGCTGGACAAGATCGTGGCTATGCACGAGAGCATGC
GCAGGGCGGATGTTGATGTCTGGCTGCCGGCGGCTGGCAACATTATGCAC
GCATACGCTCGGcaagggaaggtggaggaggagctcgacaCTTTTCAAGC
CCTGGCGGCTTCGCCCGCCCAGGTCGTCTTGGGTGAATCTCGCAAACACT
TGGGAGCAAAAGgtaagaggaaaaagacacCCTTTGCCGCCAACCCCTCG
CCcttgcttgcctcctccaccgtcgaGGCTCCCAGCTCctcaaaggagga
gaagcaccTGTTCCTGTGGAGCCGTATCCTCTCGCGCGCAATGTACCTCT
CTGCGGAGCTTGGTCGCCTCGACGTGGCATCCCTGGTGCTGGCTCTTCTT
CAGAAGTACTCGGGTCTACGAGCAGCCAGTCCTGCGGATTACATGAACCT
GATCAAGGCCTTCGGTCAGGCGAAGCGGCCGGGGGACGCGCTACGAGTCC
TGCATGTCATGAACCAAGGCAAGGGCGACGccaagccctccacccttcAC
TACAACGCCGTGCTGCACGCGTTTTCGCGAGTGGAGCGTttggaagaagc
ggaggcggtTTTCCAAGAGATGAGAATGCGTCAAGTACCGATGGACAGCA
CCACTTTCAACATGCTCATCTCGGGCTTTGAGAGAGCGCGGCAGCCAGAT
CGGGCGTTGGCCCTCTACGATGAAATGGAGCGGCGGGGTATCCCCGTCGA
CAAGTACGTTTTGAACAGTTTGATCAGCGTGACTGCGGACCTTAGGAACC
GTACTCTTGCGAACGGACTATTGACACGCCTGAGAACCCTCGCTGGTGAT
CCGCAAGAGACCTGGAATGACGTCATGTTCGGCGCCCACATGCACGCCCT
GGTCAAGGCGGATGTGGCCAGTCGACGCGAGGCGCTCGCGCTCCTAGAAA
CCTTCAAATCTGGTGGTCGGACTCCCAATACGATCATGTACAACGAAGCG
CTGCACGCCACGTATCGGTTGGTGCGAGAGGATCCTGAGGgcatggcgga
gaaagctTTGGGGCTTTACCACGAGATGCTGGCGCAAGGCCAGGCCtccg
caccctccccccttacCTACCGCCGTCTATTCAAGTGCTTGAAACAAGCT
TGCCGCTTTCAAGAGTTGGTGGacgtggccgcctccctaCCTCGGGAGAT
GCTGGTTTCCCAGGAACGGCTCGGGATTCCTGTGATCGTTGCCTCCCTGC
GTGCGGGCCAGCCAGACCGTGCGCGAGACCTCTTAGGTGACCTCGTCTTA
AAGCCCAACACCTCGTACTCGACATACCGATGGGCCACGTTCATTTATTG
CGCGAAGTTGGATCCGCCCGATGTGGCAGCGGCAGAAACCATTATAGGCT
TGGTCGAGGAGCAAGGCTGGAAACCCGACCGAGGTTTTTATGCTTCGTTG
TTGCGAGGCTGCTGGTTATCGGCCCCGAAACAAATCGAGAAAGCTTTCGA
TGTCTATCATAATATGCCGCTTGAATATCAAGGTGGAGACCCCGCGGCTG
TGGCTGCGCTCTGTCATGTGGACCGCGGTAGATTGGACAGGGTAACGGAA
TTGCTCCGAGCGATGAGAGAGCGAAATGATGTGGCTGCTCCAGACCTCCT
CGCCACGCTCCTGGGGAATCTCCTCTCGTGCGAAAGCTGGAAAAATGCGT
TGTCTGTGGTGGAATTGATGATCGATTTCGATATTGCTCTGACGCCGCCT
CAGCGTCGCAAAATCACTTCTCTCGTCCACGCGAATCCCAAAGGGCCAGC
TCTCGAAGTGCTAGAGGGACTCGGATTACTGCGTGTGCGCAACGGAGATC
ATGCAAATGGTGGAATGGATGCAGATCTGGCGGGtcgggaagaggaaggc
gagaaaGAATAA

Coding sequence (CDS) from alignment at CM002456.1:656683..659994+

>rna891 ID=rna891|Name=rna891|organism=Nannochloropsis gaditana|type=CDS|length=3312bp|location=Sequence derived from alignment at CM002456.1:656683..659994+ (Nannochloropsis gaditana)
ATGCCCGTTATTATGGTGGAAAGATCATCTAGTAAAGCAACACTCATATG
CGCGATGCTCTGCGCTGCCACTGTCACTGCACAAGCATTTATCGGCCCCA
GCACTCCCTGCTTCAAGCCCTGGATCCTGCGCTTATCTCACCGACTGCAC
GAGGCAAGCAACAACCAGGCTGGCACAGCCCCACCGTCCTCTCAGGCAAT
AGCTCCCTCAAAgaagccgtcctcctcatttaTCTCAAAGACCATTCCCC
CTTCGGCCTCTGTCGGTGACTTGCTCGAGTACTTAGGGGACCATTCCACA
CGCCGAAGAGCCGCACGCCGGCTTCTGAGGCAGTCAGAGCAGGTGCCAGC
AGACGGTCTCGTCGCGTTGTTGAAGGCAACTTGCAGACTCGGAAACACAA
ATGGGTCCCAGAAAATTCTGGCCATGCTGCGGGAAACGGGCACGCAACCG
GACGCGGCCCTCTACGAGGCCCTCCTCAGGATCGCCAACAAGCGCTACAT
GTGGGACCTGTCGCTTGCTCTTCTCTGCGAAGCAGAGCAAAGAGATGCCC
TGACCTTGACGTCGGCCATGCTTGGTGGGACGCTTTACACGTGCCTACAG
TGCGCGCGAGCTCAGGAGGCTGTCAAGCTATTGAAGCGCTTTGAACAGCA
TGGGGCCACGCCAGGGAGCAATCTGATGGTGCTGATGGTACGGCTGCTGA
GTGACAAAAATATGGTGCCAGCCTTAAGGGAGGTCCGAAAAGCCATTGGC
GCGCTGAGTGTAGAGGGCGATGCAAGGCTTTACACGGAATTGGTTTCGGC
CTTCGGGCGCGCGAGCAGCTATGACGACGTGGTGGCGAGCGCgaggctgg
tggaggggacgggtgtggtggagaagggtAGGATCTACAGTACGGCGGTA
GCGTCGCTGCTAAAAGGAAATTTGACTGCCCCTGCACGGAAGCTGTACAT
CCAAGCGCTTGAAGATGGTGCCGTAattggagggaaggggttcGAGGCCC
TGGTGGCCGGGGCGGCCGCCTCGACCGACCCTCTGGAGGGTGTCTTTTAC
CTCAATGAGATGAGGAAACACGTCGCTTCCGCACCTGCCtctgaggcgga
gggaagcatGGAGAAAGGCCTGCTCGTACCGGCTCACGTCTACCGGAGGC
TTATAGGCGCCTGTCTTCGCAGCAGGCACCTTTCAGAGGCCGCAGACTTG
GTCATCGAGTACTACAGCCAGAGCCCCGCCGCTTTTGCTGATGCCGTCCC
TTTCAACAACCTGGTCAAGGCGATCTGCGACGCGGGTTCCGCGCAGGACC
GGGCCCTGGCTGTGCAGGTCTTCGAGGCCCTCTCGGCCGTCCAGCCCGCC
GGAGCTTTCGTCGGGAACTCGTTCACCAGCATGGTCCTGATTGGAGCCTA
CCGGCGGGTGCAGGAGCTGGACAAGATCGTGGCTATGCACGAGAGCATGC
GCAGGGCGGATGTTGATGTCTGGCTGCCGGCGGCTGGCAACATTATGCAC
GCATACGCTCGGcaagggaaggtggaggaggagctcgacaCTTTTCAAGC
CCTGGCGGCTTCGCCCGCCCAGGTCGTCTTGGGTGAATCTCGCAAACACT
TGGGAGCAAAAGgtaagaggaaaaagacacCCTTTGCCGCCAACCCCTCG
CCcttgcttgcctcctccaccgtcgaGGCTCCCAGCTCctcaaaggagga
gaagcaccTGTTCCTGTGGAGCCGTATCCTCTCGCGCGCAATGTACCTCT
CTGCGGAGCTTGGTCGCCTCGACGTGGCATCCCTGGTGCTGGCTCTTCTT
CAGAAGTACTCGGGTCTACGAGCAGCCAGTCCTGCGGATTACATGAACCT
GATCAAGGCCTTCGGTCAGGCGAAGCGGCCGGGGGACGCGCTACGAGTCC
TGCATGTCATGAACCAAGGCAAGGGCGACGccaagccctccacccttcAC
TACAACGCCGTGCTGCACGCGTTTTCGCGAGTGGAGCGTttggaagaagc
ggaggcggtTTTCCAAGAGATGAGAATGCGTCAAGTACCGATGGACAGCA
CCACTTTCAACATGCTCATCTCGGGCTTTGAGAGAGCGCGGCAGCCAGAT
CGGGCGTTGGCCCTCTACGATGAAATGGAGCGGCGGGGTATCCCCGTCGA
CAAGTACGTTTTGAACAGTTTGATCAGCGTGACTGCGGACCTTAGGAACC
GTACTCTTGCGAACGGACTATTGACACGCCTGAGAACCCTCGCTGGTGAT
CCGCAAGAGACCTGGAATGACGTCATGTTCGGCGCCCACATGCACGCCCT
GGTCAAGGCGGATGTGGCCAGTCGACGCGAGGCGCTCGCGCTCCTAGAAA
CCTTCAAATCTGGTGGTCGGACTCCCAATACGATCATGTACAACGAAGCG
CTGCACGCCACGTATCGGTTGGTGCGAGAGGATCCTGAGGgcatggcgga
gaaagctTTGGGGCTTTACCACGAGATGCTGGCGCAAGGCCAGGCCtccg
caccctccccccttacCTACCGCCGTCTATTCAAGTGCTTGAAACAAGCT
TGCCGCTTTCAAGAGTTGGTGGacgtggccgcctccctaCCTCGGGAGAT
GCTGGTTTCCCAGGAACGGCTCGGGATTCCTGTGATCGTTGCCTCCCTGC
GTGCGGGCCAGCCAGACCGTGCGCGAGACCTCTTAGGTGACCTCGTCTTA
AAGCCCAACACCTCGTACTCGACATACCGATGGGCCACGTTCATTTATTG
CGCGAAGTTGGATCCGCCCGATGTGGCAGCGGCAGAAACCATTATAGGCT
TGGTCGAGGAGCAAGGCTGGAAACCCGACCGAGGTTTTTATGCTTCGTTG
TTGCGAGGCTGCTGGTTATCGGCCCCGAAACAAATCGAGAAAGCTTTCGA
TGTCTATCATAATATGCCGCTTGAATATCAAGGTGGAGACCCCGCGGCTG
TGGCTGCGCTCTGTCATGTGGACCGCGGTAGATTGGACAGGGTAACGGAA
TTGCTCCGAGCGATGAGAGAGCGAAATGATGTGGCTGCTCCAGACCTCCT
CGCCACGCTCCTGGGGAATCTCCTCTCGTGCGAAAGCTGGAAAAATGCGT
TGTCTGTGGTGGAATTGATGATCGATTTCGATATTGCTCTGACGCCGCCT
CAGCGTCGCAAAATCACTTCTCTCGTCCACGCGAATCCCAAAGGGCCAGC
TCTCGAAGTGCTAGAGGGACTCGGATTACTGCGTGTGCGCAACGGAGATC
ATGCAAATGGTGGAATGGATGCAGATCTGGCGGGtcgggaagaggaaggc
gagaaaGAATAA

Synonyms

Publications