rna8896, rna8896 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8896
Unique Name	rna8896
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1724
Alignment location	KK037250.1:414303..415602 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100065g26.7395.mrna
Orig protein id	gnl\|cribi\|Naga_100065g26.7395
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:414303..415602 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100065g26	gene8626	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21804.1	cds8866	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8896	rna8896-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:414303..415602-
coding sequence from alignment at KK037250.1:414303..415602-

mRNA sequence

>rna8896 ID=rna8896|Name=rna8896|organism=Nannochloropsis gaditana|type=mRNA|length=1724bp
GAACATGCAATAAATGCAACAACCAAGGCACTGACTGACCTTCAGAAATT
GAACATTTGCAGGAATGGTCTGGCGCACCATGCCACCCGCATACATGCAA
TTTGCAACCAAGATCTGCCTCTTCCTGGGCATCATTTCTGTCATCCGGCC
TGTCCGTGCATTTTCTTCGAGTCGGTCCCCCCCACCTCAGTCTCCGTATG
ACCGGCGAAGCCCGCCTATCAACCCCTCCACTCCGCCCACCCACGCGGAC
CTTGAGCAAGGCCGTGGCAGTAATTTGTACCGGCCATTCAATCCATTGCT
TGGACCAGGCAGCCGCGTGGCTATTGATGGCGCAAATGCCCCCGGAGAGG
GCAGTACGCTGGCAAGGCTGATCACCATAAAGCTATTCAAGTCGCAGATG
CGGCCCTATTTGGTCATTCCTTCGCTGAGCAAGGTACCAACGGGCCTTGG
TTTCGATCAGTACCGGGGCCTGTCCCGTTATATTTGCACGGCGCCTGTGG
ATAAAATGAAAGAGGGCGACGGTCGGTTTCCCCCCGAAATCGATGGATTG
GTGCTTTGCTCCGAGAGAGGGTACACAGCGCACGATATTCGAGCAATCCT
GGCGCGTGTGGACGATGGAAAGGAGGAAAGTCGAGGAGGAATAGAAAGCC
GAGCGGAAGCAGGGGAGAAGACCGGATTGAAACGTGTCGTGATGCTTTCA
AGCCTCGGGGTGAACAGACGCGAGGATATGATGTGGAAAATCTGGCAATT
CGGCGTAGATTTGGAGGCAAGACACCAGGCCGAGCAAGAGCTCATCGCAC
AAGCACACCGGCGGGGCTTCACATACACACTCATCCGCGTCGGCCCCTTG
AGGGGCGGGGGCGGCGAAGAAGGCCTTGGCAACGATTTCTACGAGCAGAA
CGAGGGGCGCCACCATCCCCTGAACCCCTTCCCCTCCCTCGCCGCGAAGA
GGGACGAGGCCTTCGACCTGACCCGCCGGGGCTTCACCTTCTCCTACTGC
GACAATATCCAGGGGGAAACGGGGAGGGTGCTGGCTGCGGAGACCTTCGT
CAAGGCCCTGGGCTCAGCCCATGTCGAGGACGTGGCCATCGCCCTTGTGA
GCGAGCAGGGCCGAACGTGGCCCAACTTCCAGGTGGCGCCGTGGGATTTG
TTCTAGCCTGAGGCCCGCCGGTCTGGAAGGGTCTGCCCCTCTGGGCATTA
TTGTCGGTAATGGAGAGGAAGCTTGTGCGCTGTGAAGGAACGGAAGGCGC
GACGCCTCCCCGAAGAGGGGTCTCGGAGGAAGGAAGGGAGGTTGCCAAGC
GGGTGGGGCCTTCGCTGCCTAGAGAGATACGGTCTTAGGCACGACCTATG
CATATGTAATTTGTTTAAAATTTCGATTCATTCGTGATGTACAGCTTTGC
AGGTATTGTTGTGAAGCCACGATATGTAGGATAATTTCGCTTAGTACAGT
ATTGTAGAGACCCGGGGCTGCCCCGCGTGAAAAATTCGGGATACTGAGGC
AATAGCAAGGTAAATAGGATGACCTATTGAACTGAAGCCGGCAATTCATA
TGATAGTTTCGCTGTAAGGGGACCGGGAGGAGGACGACGGCATTCGTGCG
GAGGCGCATGACAGGCAGAGATGCCAAGGCTGTTTATAAGATGTGCCGCT
CGTGAACAAATGATAGCATCTTGGTAACAAAGTGACGTCCTAAAACAATC
CGACAATATTATCATCGTGAAGCG

protein sequence of rna8896

>rna8896-protein ID=rna8896-protein|Name=rna8896|organism=Nannochloropsis gaditana|type=polypeptide|length=101bp
MTREASAPKEGQGGKRGGWGGSRRTKTPCRTVAAKRFTMIILSDCFRTSL
CYQDAIICSRAAHLINSLGISACHAPPHECRRPPPGPLTAKLSYELPASV
Q

mRNA from alignment at KK037250.1:414303..415602-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8896 ID=rna8896|Name=rna8896|organism=Nannochloropsis gaditana|type=mRNA|length=1300bp|location=Sequence derived from alignment at KK037250.1:414303..415602- (Nannochloropsis gaditana)
GAGGTGGGGATGGACTCTCTCTGAGCCTTCTTGCCCGTCCTAGGTCCCCT
CGGCAACGAGCATCCTCATATTGCCCTGTTTGGTATTCCAATCCTCTGCA
ACTCCTCTATCACTACAGTATCCTATGGGAAAGAAGTCCGACGTGGTTTT
GCCTGCTCGCGAGTACGCCCCTTTGGAGGCGCGGACGGATATTGTTGCTT
GGACCAAGGGAAGAGAGGCTCGGTAAGTCGAAGCTTGCGTTGACATAACA
TAGATGCCTTCAGGCCCACACGGCCTTCTCTACATATAGCAGTCTTCTGA
TACAAGAGAATGTATTGCGGTTGTCTGATTTTTCCTCATATGCGCCACTC
TTTAACGGGTGCAGGAGTTGGGGTGCAGGAGTTTTGAGGCAACGACATTG
ATGCGTGTCGTGGCAGGGCTTATCTTTCATTTTAGGGGTCTATTCACCTG
TCAATCCGCGTATTACCACAAATCCACATATCAGAGCACGAGAAGAGGCG
ATTGCTATCGAAATGGTGAAGAATTTGCGCGATCAAGTGTCCTGGTGCCA
ACGCAAGCACCCGGTTACTCATTATTATGATTGCGCCGAGCTGGTGGGAA
AGTACTTAAAGCTCGTCAGGGTAAGGAGCCTTCTAAATAAGGGATCAATC
AAGCTTTGAATTATTATGGAAGAGAGTAGAAAATGTGAATGAGGTCTGGG
TTCTGACTGTAGCCCCTGGACTTATCATTCCATGCCCTCCTGACAACAGG
ATCCTTTGCGCGGCGTAAAGCTACCAGGCGCTGCATCCGAAGAATGAGAA
ATGAAACAAGAGCTCTTGGGTCTTGAGGATGACGCGGGAGGCTTCAGCAC
CGAAGGAGGGCCAAGGGGGAAAGCGCGGGGGATGGGGAGGGAGCCGAAGA
ACGAAGACACCATGTAGAACCGTTGCCGCGAAGCGCTTCACGATGATAAT
ATTGTCGGATTGTTTTAGGACGTCACTTTGTTACCAAGATGCTATCATTT
GTTCACGAGCGGCACATCTTATAAACAGCCTTGGCATCTCTGCCTGTCAT
GCGCCTCCGCACGAATGCCGTCGTCCTCCTCCCGGTCCCCTTACAGCGAA
ACTATCATATGAATTGCCGGCTTCAGTTCAATAGGTCATCCTATTTACCT
TGCTATTGCCTCAGTATCCCGAATTTTTCACGCGGGGCAGCCCCGGGTCT
CTACAATACTGTACTAAGCGAAATTATCCTACATATCGTGGCTTCACAAC
AATACCTGCAAAGCTGTACATCACGAATGAATCGAAATTTTAAACAAATT

Coding sequence (CDS) from alignment at KK037250.1:414303..415602-

>rna8896 ID=rna8896|Name=rna8896|organism=Nannochloropsis gaditana|type=CDS|length=306bp|location=Sequence derived from alignment at KK037250.1:414303..415602- (Nannochloropsis gaditana)
ATGACGCGGGAGGCTTCAGCACCGAAGGAGGGCCAAGGGGGAAAGCGCGG
GGGATGGGGAGGGAGCCGAAGAACGAAGACACCATGTAGAACCGTTGCCG
CGAAGCGCTTCACGATGATAATATTGTCGGATTGTTTTAGGACGTCACTT
TGTTACCAAGATGCTATCATTTGTTCACGAGCGGCACATCTTATAAACAG
CCTTGGCATCTCTGCCTGTCATGCGCCTCCGCACGAATGCCGTCGTCCTC
CTCCCGGTCCCCTTACAGCGAAACTATCATATGAATTGCCGGCTTCAGTT
CAATAG

Synonyms

Publications