rna8895, rna8895 (mRNA) Nannochloropsis gaditana

Overview
Namerna8895
Unique Namerna8895
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length788
Alignment locationKK037250.1:412836..414669 +

Link to JBrowse

Properties
Property NameValue
ProductNAD(P)-binding domain protein
Orig transcript idgnl|cribi|Naga_100065g27.7390.mrna
Orig protein idgnl|cribi|Naga_100065g27.7390
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:412836..414669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100065g27gene8625Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8895rna8895-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21799.1cds8865Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8895 ID=rna8895|Name=rna8895|organism=Nannochloropsis gaditana|type=mRNA|length=788bp
TATGCTCCCAGTCGTCACTTTATTCCATTACATGTCATGCACGTGTTGTT
GCGTGTCATGTCCCGAACTTACTGGAGTCTGCACAACATCTGAAAATTGA
CAGGGTGTCCTTTACCTCTTTCTTAGTGCATGAGCCTCCCCTTGCCCTGG
AGCGCCCGCCGTGCTATCTGCCTCTCTGTCTCCAGCATCTTGGCCACAGC
GAAAAGTACCGCTTTTGCGTACCCGACAAGCACTTTTTCTGCCGATACAC
GTACGCGCGGGCTCGCTGTCATGACCCACAGAGCGTCTCGTAACGATAAC
GTTGGCGGGGCTGGTATAACCCTCAACCCTGTAGGCGGGCCTGCTCAATC
CTCCATCATTTGGATGCACGGCCTAGGCGACTCCGGCGAAGGGTGGGCCG
GGGCCTTTGATCCTAAAGTATTCCCCACCACCCGCATGATCTTTCCCACC
GCACCTACTCGGCCCATCACCTTAAATGGAGGCTTTCCGATGCCGGGATG
GTTTGACATCAATGGTCTGGATGAAAGCAGTCCGGAAGACAGAGCGGGCT
TTGAAGAGGCCAAGCAACGCATCGCACGAATAGTGCAAGGGGAAGTCGAG
GCAGGCGTGCCGGCAGATAAGATTGTCTTGGGAGGCTTTTCGCAAGGAGG
GGCTGTCACGCTGCACTTAGCCCTGAGAAGCGAGGTTCGATTGGGCGGGG
CTGTCATTTTATCCGGATGGTTGCCACTTAAGGCGGACTACCCTGCTGCC
TTGACGGAAGTTGGGAAAGCCATGCCATACTTCCACGG
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protein sequence of rna8895

>rna8895-protein ID=rna8895-protein|Name=rna8895|organism=Nannochloropsis gaditana|type=polypeptide|length=363bp
MVWRTMPPAYMQFATKICLFLGIISVIRPVRAFSSSRSPPPQSPYDRRSP
PINPSTPPTHADLEQGRGSNLYRPFNPLLGPGSRVAIDGANAPGEGSTLA
RLITIKLFKSQMRPYLVIPSLSKVPTGLGFDQYRGLSRYICTAPVDKMKE
GDGRFPPEIDGLVLCSERGYTAHDIRAILARVDDGKEESRGGIESRAEAG
EKTGLKRVVMLSSLGVNRREDMMWKIWQFGVDLEARHQAEQELIAQAHRR
GFTYTLIRVGPLRGGGGEEGLGNDFYEQNEGRHHPLNPFPSLAAKRDEAF
DLTRRGFTFSYCDNIQGETGRVLAAETFVKALGSAHVEDVAIALVSEQGR
TWPNFQVAPWDLF
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mRNA from alignment at KK037250.1:412836..414669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8895 ID=rna8895|Name=rna8895|organism=Nannochloropsis gaditana|type=mRNA|length=1834bp|location=Sequence derived from alignment at KK037250.1:412836..414669+ (Nannochloropsis gaditana)
GAACATGCAATAAATGCAACAACCAAGGCACTGACTGACCTTCAGAAATT
GAACATTTGCAGGAATGGTCTGGCGCACCATGCCACCCGCATACATGCAA
TTTGCAACCAAGATCTGCCTCTTCCTGGGCATCATTTCTGTCATCCGGCC
TGTCCGTGCATTTTCTTCGAGTCGGTCCCCCCCACCTCAGTCTCCGTATG
ACCGGCGAAGCCCGCCTATCAACCCCTCCACTCCGCCCACCCACGCGGAC
CTTGAGCAAGGCCGTGGCAGTAATTTGTACCGGCCATTCAATCCATTGCT
TGGACCAGGCAGCCGCGTGGCTATTGATGGCGCAAATGCCCCCGGAGAGG
GCAGTACGCTGGCAAGGCTGATCACCATAAAGCTATTCAAGTCGCAGATG
CGGCCCTATTTGGTCATTCCTTCGCTGAGCAAGGTACCAACGGGCCTTGG
TTTCGATCAGTACCGGGGCCTGTCCCGTTATATTTGCACGGCGCCTGTGG
ATAAAATGAAAGAGGGCGACGGTCGGTTTCCCCCCGAAATCGATGGATTG
GTGCTTTGCTCCGAGAGAGGGTACACAGCGCACGATATTCGAGCAATCCT
GGCGCGTGTGGacgatggaaaggaggaaagtcgaggaggaatAGAAAGCC
GAgcggaagcaggggagaagacCGGATTGAAACGTGTCGTGATGCTTTCA
AGCCTCGGGGTGAACAGACGCGAGGATATGATGTGGAAAATCTGGCAATT
CGGCGTAGATTTGGAGGCAAGAGTGAGTAAAGAAAGAAGacgtgaggaag
aggaggaagtaagTGGATGGCCCCCGAAGGGTGAGGGGAGAGAGTACTGA
CTGCTTGTCTTCCTCAACCTGTTGACCCACAGCACCAGGCCGAGCAAGAG
CTCATCGCACAAGCACACCGGCGGGGCTTCACATACACACTCATCCGCGT
CGGCCCCttgaggggcgggggcggcgaagaaggccttgGCAACGATTTCT
ACGAGCAGAACGAGGGGCGCCACCATCCCCTgaaccccttcccctccctc
gccgcgaagagggacgaggccttCGACCTGACCCGCCGGGGCTTCACCTT
CTCCTACTGCGACAATATCCAGGGGGAAACGGGGAGGGTGCTGGCTGCGG
AGACCTTCGTCAAGGCCCTGGGCTCAGCCCATgtcgaggacgtggccatC
GCCCTTGTGAGCGAGCAGGGCCGAACGTGGCCCAACTTCCAGGTGGCGCC
GTGGGATTTGTTCTAGCCTGAGGCCCGCCGGTCTGGAAGGGTCTGCCCCT
CTGGGCATTATTGTCGGTaatggagaggaagcttGTGCGCTGTGAAGGAA
CGGAAGGCGCGACGCCTCCCCGAAGAGGGGtctcggaggaaggaagggag
gttgcCAAGCGGGTGGGGCCTTCGCTGCCTAGAGAGATACGGTCTTAGGC
ACGACCTATGCATATGTAATTTGTTTAAAATTTCGATTCATTCGTGATGT
ACAGCTTTGCAGGTATTGTTGTGAAGCCACGATATGTAGGATAATTTCGC
TTAGTACAGTATTGTAGAGACCCGGGGCTGCCCCGCGTGAAAAATTCGGG
ATACTGAGGCAATAGCAAGGTAAATAGGATGACCTATTGAACTGAAGCCG
GCAATTCATATGATAGTTTCGCTGTAAggggaccgggaggaggacgacgg
catTCGTGCGGAGGCGCATGACAGGCAGAGATGCCAAGGCTGTTTATAAG
ATGTGCCGCTCGTGAACAAATGATAGCATCTTGGTAACAAAGTGACGTCC
TAAAACAATCCGACAATATTATCATCGTGAAGCG
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Coding sequence (CDS) from alignment at KK037250.1:412836..414669+

>rna8895 ID=rna8895|Name=rna8895|organism=Nannochloropsis gaditana|type=CDS|length=2184bp|location=Sequence derived from alignment at KK037250.1:412836..414669+ (Nannochloropsis gaditana)
ATGGTCTGGCGCACCATGCCACCCGCATACATGCAATTTGCAACCAAGAT
CTGCCTCTTCCTGGGCATCATTTCTGTCATCCGGCCTGTCCGTGCATTTT
CTTCGAGTCGGTCCCCCCCACCTCAGTCTCCGTATGACCGGCGAAGCCCG
CCTATCAACCCCTCCACTCCGCCCACCCACGCGGACCTTGAGCAAGGCCG
TGGCAGTAATTTGTACCGGCCATTCAATCCATTGCTTGGACCAGGCAGCC
GCGTGGCTATTGATGGCGCAAATGCCCCCGGAGAGGGCAGTACGCTGGCA
AGGCTGATCACCATAAAGCTATTCAAGTCGCAGATGCGGCCCTATTTGGT
CATTCCTTCGCTGAGCAAGGTACCAACGGGCCTTGGTTTCGATCAGTACC
GGGGCCTGTCCCGTTATATTTGCACGGCGCCTGTGGATAAAATGAAAGAG
GGCGACGGTCGGTTTCCCCCCGAAATCGATGGATTGGTGCTTTGCTCCGA
GAGAGGGTACACAGCGCACGATATTCGAGCAATCCTGGCGCGTGTGGacg
atggaaaggaggaaagtcgaggaggaatAGAAAGCCGAgcggaagcaggg
gagaagacCGGATTGAAACGTGTCGTGATGCTTTCAAGCCTCGGGGTGAA
CAGACGCGAGGATATGATGTGGAAAATCTGGCAATTCGGCGTAGATTTGG
AGGCAAGACACCAGGCCGAGCAAGAGCTCATCGCACAAGCACACCGGCGG
GGCTTCACATACACACTCATCCGCGTCGGCCCCttgaggggcgggggcgg
cgaagaaggccttgGCAACGATTTCTACGAGCAGAACGAGGGGCGCCACC
ATCCCCTgaaccccttcccctccctcgccgcgaagagggacgaggccttC
GACCTGACCCGCCGGGGCTTCACCTTCTCCTACTGCGACAATATCCAGGG
GGAAACGGGGAGGGTGCTGGCTGCGGAGACCTTCGTCAAGGCCCTGGGCT
CAGCCCATgtcgaggacgtggccatCGCCCTTGTGAGCGAGCAGGGCCGA
ACGTGGCCCAACTTCCAGGTGGCGCCGTGGGATTTGTTCTAGATGGTCTG
GCGCACCATGCCACCCGCATACATGCAATTTGCAACCAAGATCTGCCTCT
TCCTGGGCATCATTTCTGTCATCCGGCCTGTCCGTGCATTTTCTTCGAGT
CGGTCCCCCCCACCTCAGTCTCCGTATGACCGGCGAAGCCCGCCTATCAA
CCCCTCCACTCCGCCCACCCACGCGGACCTTGAGCAAGGCCGTGGCAGTA
ATTTGTACCGGCCATTCAATCCATTGCTTGGACCAGGCAGCCGCGTGGCT
ATTGATGGCGCAAATGCCCCCGGAGAGGGCAGTACGCTGGCAAGGCTGAT
CACCATAAAGCTATTCAAGTCGCAGATGCGGCCCTATTTGGTCATTCCTT
CGCTGAGCAAGGTACCAACGGGCCTTGGTTTCGATCAGTACCGGGGCCTG
TCCCGTTATATTTGCACGGCGCCTGTGGATAAAATGAAAGAGGGCGACGG
TCGGTTTCCCCCCGAAATCGATGGATTGGTGCTTTGCTCCGAGAGAGGGT
ACACAGCGCACGATATTCGAGCAATCCTGGCGCGTGTGGacgatggaaag
gaggaaagtcgaggaggaatAGAAAGCCGAgcggaagcaggggagaagac
CGGATTGAAACGTGTCGTGATGCTTTCAAGCCTCGGGGTGAACAGACGCG
AGGATATGATGTGGAAAATCTGGCAATTCGGCGTAGATTTGGAGGCAAGA
CACCAGGCCGAGCAAGAGCTCATCGCACAAGCACACCGGCGGGGCTTCAC
ATACACACTCATCCGCGTCGGCCCCttgaggggcgggggcggcgaagaag
gccttgGCAACGATTTCTACGAGCAGAACGAGGGGCGCCACCATCCCCTg
aaccccttcccctccctcgccgcgaagagggacgaggccttCGACCTGAC
CCGCCGGGGCTTCACCTTCTCCTACTGCGACAATATCCAGGGGGAAACGG
GGAGGGTGCTGGCTGCGGAGACCTTCGTCAAGGCCCTGGGCTCAGCCCAT
gtcgaggacgtggccatCGCCCTTGTGAGCGAGCAGGGCCGAACGTGGCC
CAACTTCCAGGTGGCGCCGTGGGATTTGTTCTAG
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Synonyms
Publications