rna8892, rna8892 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8892
Unique Name	rna8892
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1394
Alignment location	KK037250.1:405209..408175 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100399g4.1191.mrna
Orig protein id	gnl\|cribi\|Naga_100399g4.1191
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:405209..408175 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100399g4	gene8622	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21813.1	cds8862	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8892	rna8892-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:405209..408175-
coding sequence from alignment at KK037250.1:405209..408175-

mRNA sequence

>rna8892 ID=rna8892|Name=rna8892|organism=Nannochloropsis gaditana|type=mRNA|length=1394bp
GGCGGGCCCTGCCCCCCACTGCAGCCTCCGCAGCGCACGCCCAGGGCAGA
GGCGGAGGATAGGAACCGTCTGGCCGCCGCCCAATGGAGGCAGTGTCGCT
CCCTCCTCTTCTCGGGTGCTCCTGGATGCGCCGATTTGGCGCTTGCCCTC
CTACCCCCTCCCAAATTCCACGGCCCATCCACCCACGAGAGCGCGGAGAA
CTTCCCCTCGGGAGACCTGCCTTCCCCGTCCCTTCTGTGCAGCAATCCCT
GCATGGAAGCCGTACGATGGGCCTGTCGGGACGCCGAAGGCACCTACATT
CCGCTGCTGAGAGGTCTTCCCCACGACTTCTGCGCGCGAAACCAAGAAGG
AAAATATTGCTTGGAGGCATACATGCCCCTTCTGTCAGGGTGTCCCTCTT
CAGTAAACTGCACTGCCTCCCTTTCCCCCCTCTGCGGGGCCCTCCAAGAC
ACGGGCTGTTGCTTCCAGCATCTATTGCCCCGCCATCCACAAGCTGCCGA
CCTCAGCTTCCATTGTCCTCGCTCCCAAGACACCCCCCCGGCCTGTCCCC
CTCCGCCGGACACGCTCTTTGGACCGGGCAGCCTGCCTCTCTCGGCCGAG
CCCGTCACCTCTCTTTCCTCCTGGGGCCGCAGTCTCACGGCGAGCGAGAT
CGTCCTTCTGGGTAGCCTGAGCCTCCTCTCCCTCCTCCTTGTGGCCGTTG
TGCCGAGATGGGCCCGCGCCCTGGCCTCGCGGGGTTCTCTTGGGGCGTGG
TACCAACACCTACTGCGAACAATCTCCAGGAGACCCTCGGTTTCCTCCGT
CGGAGGGGATGGCGTGGCGGGTGAAACTGATAGCCTCACCAAGGAGATAG
AGCGAGGCACTCCGAGAGCACAGTGTGTGTGATTACCTAAAGCACCTTGT
AAAGAAAATTTGTGATTTTAGGGGTTCTTCTCTTTTCTTATTTTTCTTCG
GAAATGATTGGCAAGCAATCAGTAAGTGCCGAGGGCGTCGTTACTTGAAA
CGCGCCAAATAAATTCGGTATGCGTTGGCACACAATTTTCACGCACCGCC
CTCCTTCTATTTCTCTGCATGCCGGTGAGGGCATTCCTTATTGAAGTATA
GAATGATGACATAAAGTGCTGCCCATTCTTTGTGTGAAAGATTATTGCTT
ATTGCCAATCAAGAAGTCTGCCTTTCTTTCGGCGCATGTCCTTGTCTGTT
GGTTCAGCCAAGGTTCTTGTGCTTTTTATGCAGATGTGTATGCCTCTATG
TTTACTAATCTGGCCTAAGCCCACCGTCTTACCACGCCTTTCACCATAGT
CATAGCATGACCTGGTCGTTGGGCTCCTATTTCCTAATGTTTTGATCTGA
CCGCAACGAAACATATCTGGAGTAATGTAATAAGTAATACACCG

protein sequence of rna8892

>rna8892-protein ID=rna8892-protein|Name=rna8892|organism=Nannochloropsis gaditana|type=polypeptide|length=738bp
MDLFQEEEMNCAPSAEFLMSYGQIPISEEAGRVSRLSSWTLPGAKSTKHS
YAHVSGAGTLTQATALAAVRMEDQSSPLAVDGIACSLNDRKDGRQDLGTV
PEALSDGNTNSLITSFPAKTPTSCLGQHEERARAKFGHLAAPESSIDKVM
AEPDKTAVSLSKTSKTITPLANSPTGSFQEIIPGSQRLGDPSLFRPPSEV
ACPAFKPAKILSRRSSAKDANAQYPSNLSALQPHQDVEKVETSTRRNHGR
KDQRKAMQRVRAEVLRILDSDTGESPPFIDYKKTGSEENISSDKDTRGEK
ESDLIAGQERSSLLLSSTLSLQSEQKLVDAASVWGAGGNPPSSSFSSFAA
LHSLEGSRANQLGATSAVPSASPWGPPLVFTPVQPDGPTASSSTTNQESD
KIQAKNASEGPRGLDGLMEGLTRVVLDPGSCQTSKVLPKSSLAPSFCRPT
APTRPPPPLTADTSEKESASAAIPQEEIPALAAGALHDGAGGQDARPSGG
QSQEEEEPASPHRRRRTRRGRRGQGRRKRAAEARLARRLGLPLDLEEGFS
QGGQEDVFMYSPSHKREDLPLLTHDLTAPLPATAMLTTLLDSRRHYPNTP
TVTYGPQQEEHIPGRPPRNPPLVSTSRPRLPPDSYAHAPLHQPQRPGSLA
CQSLRMGCAGSTLSGRQYLDTEDAIVPATEGKSMAHLLRDGWYPPMASSR
LPAPSRPRASDSVNASLDLPVSAGYPPGRGLDVRRAYA

mRNA from alignment at KK037250.1:405209..408175-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8892 ID=rna8892|Name=rna8892|organism=Nannochloropsis gaditana|type=mRNA|length=2967bp|location=Sequence derived from alignment at KK037250.1:405209..408175- (Nannochloropsis gaditana)
CCACAGGCAATCTCCCTAGAAGCCCTGCACTGCGGCCCATGGCCACCTAG
GAACGGTTGCCAAACGGGGCAATCTGGTCAGACTTGCCAAATCGAGCCTG
CCGCTCTCAAGATATCTGTCCTATTTAATTAAAAGAATCTCTGAGCAAGA
CCATGGACCTCTTTCAAGAGGAAGAGATGAATTGCGCGCCCTCCGCCGAG
TTTCTCATGTCCTACGGCCAAATTCCTATCAGCGAGGAGGCAGGGCGAGT
GTCTCGACTATCGAGCTGGACCCTTCCGGGCGCCAAATCAACCAAGCACT
CTTATGCACATGTTTCAGGTGCAGGTACTTTGACTCAAGCAACTGCATTG
GCAGCGGTACGAATGGAGGATCAAAGCAGCCCTCTTGCTGTAGATGGTAT
CGCCTGCAGCCTTAACGACCGCAAAGATGGAAGGCAGGACTTAGGGACCG
TCCCAGAAGCTCTCTCAGACGGCAACACAAATTCTTTAATAACATCCTTT
CCTGCTAAGACTCCAACTTCCTGTCTGGGTCAGCATGAAGAGAGAGCCAG
GGCAAAATTTGGCCATTTAGCAGCCCCAGAAAGTTCTATTGACAAAGTTA
TGGCGGAGCCAGACAAGACAGCGGTCTCATTATCTAAGACATCAAAGACC
ATTACACCCCTTGCAAATTCACCGACGGGATCTTTCCAAGAAATCATTCC
AGGATCGCAACGTTTGGGCGACCCTTCCCTGTTTCGGCCTCCCTCAGAAG
TCGCCTGTCCTGCTTTCAAACCCGCCAAAATCCTGTCCAGACGTTCCAGC
GCAAAAGATGCGAATGCACAATATCCTTCCAATCTTTCAGCACTGCAGCC
CCATCAAGACGTGGAGAAAGTGGAAACGTCGACCAGACGGAACCACGGCC
GTAAAGATCAACGGAAAGCCATGCAAAGGGTGCGCGCCGAGGTGCTACGC
ATCTTGGACTCCGACACCGGAGAGAGTCCGCCCTTTATTGACTACAAGAA
GACTGGGAGTGAGGAAAATATAAGCTCAGATAAGGACACCAGGGGAGAGA
AAGAGAGCGACCTGATCGCCGGGCAAGAGCGCTCTTCCCTGTTGCTTTCT
TCGACCCTCTCCCTCCAGTCAGAGCAAAAATTAGTAGACGCAGCTAGCGT
GTGGGGCGCTGGTGGGAATCCGCCTTCTTCGTCTTTTTCTTCTTTTGCTG
CGTTACATTCCTTGGAAGGCAGCCGCGCGAACCAGCTCGGCGCCACCTCT
GCAGTGCCCAGCGCCTCACCGTGGGGTCCCCCGCTCGTGTTTACGCCCGT
CCAGCCCGATGGGCCCACCGCAAGCTCCTCCACGACGAACCAAGAAAGTG
ACAAGATCCAAGCCAAAAACGCAAGCGAGGGCCCGCGTGGGCTCGACGGG
CTGATGGAAGGCCTCACTCGGGTGGTGCTGGACCCCGGCTCCTGCCAGAC
CAGTAAGGTCCTTCCCAAGTCGTCATTGGCGCCTTCATTCTGTCGCCCCA
CTGCACCCACACGCCCGCCCCCGCCTCTTACGGCTGATACTTCCGAAAAG
GAGTCGGCCTCGGCTGCCATCCCCCAGGAGGAGATTCCTGCCCTGGCAGC
AGGCGCATTGCACGACGGGGCCGGGGGCCAGGATGCGCGTCCCTCCGGCG
GTCAGTCACAGGAGGAAGAAGAGCCCGCCTCGCCACACAGAAGACGCAGG
ACCCGGCGGGGGCGTCGGGGTCAAGGGCGTCGAAAGCGAGCGGCGGAGGC
ACGGCTGGCCCGGCGCTTGGGTCTACCTTTGGACCTGGAGGAGGGCTTTT
CGCAAGGCGGACAAGAAGACGTTTTCATGTACTCGCCGTCCCATAAACGG
GAGGACTTGCCTCTCCTCACTCACGATCTGACCGCGCCCCTTCCGGCCAC
CGCGATGCTGACAACATTGCTCGATTCCAGGCGTCACTATCCAAACACTC
CAACCGTCACATACGGCCCGCAACAGGAAGAGCACATCCCCGGCCGCCCC
CCCCGGAATCCTCCCTTGGTCTCCACGTCCCGCCCCCGGTTACCTCCCGA
TTCTTACGCCCACGCGCCTCTTCACCAGCCGCAACGACCCGGCAGCCTTG
CTTGCCAGTCGCTGCGCATGGGTTGCGCCGGGTCAACGCTCTCAGGCCGC
CAGTATTTGGACACTGAGGACGCCATCGTCCCTGCCACTGAGGGCAAATC
TATGGCGCACCTTCTCCGGGATGGCTGGTACCCGCCGATGGCATCTTCGC
GCTTGCCTGCACCTTCTCGGCCCCGTGCATCGGACTCCGTAAACGCATCT
CTTGACTTGCCTGTGTCGGCGGGCTATCCACCAGGGCGGGGTTTAGACGT
GCGCCGTGCGTATGCATAAACACAAGCATCGACATGAAGACGGAGACGGG
CAGAGAGGCACGCTTAAGAAGGGACACGGGATCGCACAAATAGCATCTGG
AAAGGAAGAGAGATAACGAACCATTTGAGAAGCGTGGAGGCGGTGTATTA
CTTATTACATTACTCCAGATATGTTTCGTTGCGGTCAGATCAAAACATTA
GGAAATAGGAGCCCAACGACCAGGTCATGCTATGACTATGGTGAAAGGCG
TGGTAAGACGGTGGGCTTAGGCCAGATTAGTAAACATAGAGGCATACACA
TCTGCATAAAAAGCACAAGAACCTTGGCTGAACCAACAGACAAGGACATG
CGCCGAAAGAAAGGCAGACTTCTTGATTGGCAATAAGCAATAATCTTTCA
CACAAAGAATGGGCAGCACTTTATGTCATCATTCTATACTTCAATAAGGA
ATGCCCTCACCGGCATGCAGAGAAATAGAAGGAGGGCGGTGCGTGAAAAT
TGTGTGCCAACGCATACCGAATTTATTTGGCGCGTTTCAAGTAACGACGC
CCTCGGCACTTACTGATTGCTTGCCAATCATTTCCGAAGAAAAATAAGAA
AAGAGAAGAACCCCTAA

Coding sequence (CDS) from alignment at KK037250.1:405209..408175-

>rna8892 ID=rna8892|Name=rna8892|organism=Nannochloropsis gaditana|type=CDS|length=2217bp|location=Sequence derived from alignment at KK037250.1:405209..408175- (Nannochloropsis gaditana)
ATGGACCTCTTTCAAGAGGAAGAGATGAATTGCGCGCCCTCCGCCGAGTT
TCTCATGTCCTACGGCCAAATTCCTATCAGCGAGGAGGCAGGGCGAGTGT
CTCGACTATCGAGCTGGACCCTTCCGGGCGCCAAATCAACCAAGCACTCT
TATGCACATGTTTCAGGTGCAGGTACTTTGACTCAAGCAACTGCATTGGC
AGCGGTACGAATGGAGGATCAAAGCAGCCCTCTTGCTGTAGATGGTATCG
CCTGCAGCCTTAACGACCGCAAAGATGGAAGGCAGGACTTAGGGACCGTC
CCAGAAGCTCTCTCAGACGGCAACACAAATTCTTTAATAACATCCTTTCC
TGCTAAGACTCCAACTTCCTGTCTGGGTCAGCATGAAGAGAGAGCCAGGG
CAAAATTTGGCCATTTAGCAGCCCCAGAAAGTTCTATTGACAAAGTTATG
GCGGAGCCAGACAAGACAGCGGTCTCATTATCTAAGACATCAAAGACCAT
TACACCCCTTGCAAATTCACCGACGGGATCTTTCCAAGAAATCATTCCAG
GATCGCAACGTTTGGGCGACCCTTCCCTGTTTCGGCCTCCCTCAGAAGTC
GCCTGTCCTGCTTTCAAACCCGCCAAAATCCTGTCCAGACGTTCCAGCGC
AAAAGATGCGAATGCACAATATCCTTCCAATCTTTCAGCACTGCAGCCCC
ATCAAGACGTGGAGAAAGTGGAAACGTCGACCAGACGGAACCACGGCCGT
AAAGATCAACGGAAAGCCATGCAAAGGGTGCGCGCCGAGGTGCTACGCAT
CTTGGACTCCGACACCGGAGAGAGTCCGCCCTTTATTGACTACAAGAAGA
CTGGGAGTGAGGAAAATATAAGCTCAGATAAGGACACCAGGGGAGAGAAA
GAGAGCGACCTGATCGCCGGGCAAGAGCGCTCTTCCCTGTTGCTTTCTTC
GACCCTCTCCCTCCAGTCAGAGCAAAAATTAGTAGACGCAGCTAGCGTGT
GGGGCGCTGGTGGGAATCCGCCTTCTTCGTCTTTTTCTTCTTTTGCTGCG
TTACATTCCTTGGAAGGCAGCCGCGCGAACCAGCTCGGCGCCACCTCTGC
AGTGCCCAGCGCCTCACCGTGGGGTCCCCCGCTCGTGTTTACGCCCGTCC
AGCCCGATGGGCCCACCGCAAGCTCCTCCACGACGAACCAAGAAAGTGAC
AAGATCCAAGCCAAAAACGCAAGCGAGGGCCCGCGTGGGCTCGACGGGCT
GATGGAAGGCCTCACTCGGGTGGTGCTGGACCCCGGCTCCTGCCAGACCA
GTAAGGTCCTTCCCAAGTCGTCATTGGCGCCTTCATTCTGTCGCCCCACT
GCACCCACACGCCCGCCCCCGCCTCTTACGGCTGATACTTCCGAAAAGGA
GTCGGCCTCGGCTGCCATCCCCCAGGAGGAGATTCCTGCCCTGGCAGCAG
GCGCATTGCACGACGGGGCCGGGGGCCAGGATGCGCGTCCCTCCGGCGGT
CAGTCACAGGAGGAAGAAGAGCCCGCCTCGCCACACAGAAGACGCAGGAC
CCGGCGGGGGCGTCGGGGTCAAGGGCGTCGAAAGCGAGCGGCGGAGGCAC
GGCTGGCCCGGCGCTTGGGTCTACCTTTGGACCTGGAGGAGGGCTTTTCG
CAAGGCGGACAAGAAGACGTTTTCATGTACTCGCCGTCCCATAAACGGGA
GGACTTGCCTCTCCTCACTCACGATCTGACCGCGCCCCTTCCGGCCACCG
CGATGCTGACAACATTGCTCGATTCCAGGCGTCACTATCCAAACACTCCA
ACCGTCACATACGGCCCGCAACAGGAAGAGCACATCCCCGGCCGCCCCCC
CCGGAATCCTCCCTTGGTCTCCACGTCCCGCCCCCGGTTACCTCCCGATT
CTTACGCCCACGCGCCTCTTCACCAGCCGCAACGACCCGGCAGCCTTGCT
TGCCAGTCGCTGCGCATGGGTTGCGCCGGGTCAACGCTCTCAGGCCGCCA
GTATTTGGACACTGAGGACGCCATCGTCCCTGCCACTGAGGGCAAATCTA
TGGCGCACCTTCTCCGGGATGGCTGGTACCCGCCGATGGCATCTTCGCGC
TTGCCTGCACCTTCTCGGCCCCGTGCATCGGACTCCGTAAACGCATCTCT
TGACTTGCCTGTGTCGGCGGGCTATCCACCAGGGCGGGGTTTAGACGTGC
GCCGTGCGTATGCATAA

Synonyms

Publications