rna889, rna889 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna889
Unique Name	rna889
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2404
Alignment location	CM002456.1:652348..654490 -

Link to JBrowse

Properties


Property Name	Value
Product	dihydroxy-2-butanone kinase
Orig transcript id	gnl\|cribi\|Naga_100017g85.337.mrna
Orig protein id	gnl\|cribi\|Naga_100017g85.337
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:652348..654490 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g85	gene852	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29839.1	cds889	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna889	rna889-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:652348..654490-
coding sequence from alignment at CM002456.1:652348..654490-

mRNA sequence

>rna889 ID=rna889|Name=rna889|organism=Nannochloropsis gaditana|type=mRNA|length=2404bp
ATGTCCTTAATAGTTGGCGTCGATAAGAAAGACGCCAGCGGAGGAATTCG
CAGCTATAGAGGACGTGATCTTTGTGAAGGAGGACAGCGTGCGGACACTT
CTTCCACAGGGCCGACATTGAACGCAGACCGTGGAAAGGCTGCTGATCAA
GACGGGGAAGACAAGGGCTTTGACCTCGCAGCAAGTAATTACGCCTTCAA
ACGTGCTGCTCCGCCACCGGTTGTCACGAAGGCGGTGCCCGACGTCCCCA
TTCTCTTCCAAGGATGGGTAGTAGATGAGCGGAGGGAGGACTCAAAAGTG
AAAAGGTTTCTTGTGCTAGAAGGCACGACGTTGACTTTCTACGAAGATGA
GAAAAACACGAGCCCCGTGGTCGGCCAGGCAAACGTTGAAAAGTTCCATC
TTTGTGGGGAATCCATTTTGGACTGTGTTCACTCGCCTGATGACATAAGT
AAGCTTGTCCTAATCGTAAAATGTGGCGGCGGGGCAGGAGCTTTGCCTAG
TCGTAATGCCCTTCATTTCTCTTGTGAAAATGGGCAGGAAAAAGACGAGT
GGATCGAGCGGATCCAGGAGACAATCGAATCCATCAAGCGACGCAGTGAG
CATGAGTCTATGGGAGTCTTTCCCGGGTACTGCTCGGTCCTGTCAACTCC
CACAACACGCAACGGCGAGCTGTGCATGCAGGCAGGGACTCCCGCGTCAG
AGACGCGACGGCAAGTGTCAGCCCTATCTTCTTCTTCAGGTGGCAAATGT
GCCGCCTTTTTACCCTTTTCAAAGGCAACATTGCAAGCTTTTCATCAGCA
AGAGCAGCCAACGCGTGAAGAAATAGAATCAAGTCAAATACAAAAGCAGA
CGCATACCCATGAAACCCCTCCTGTCCCATCATCTTGGGCTCTCCCCACC
CAGTCGTCCCAAAAATTGCATTCACCTTCACCTTTGGCGCAAACCCCACC
TTGCAGCACGAGTAATACGTCGTTTCCGCAGGCCGTCGATGGAAGATACC
CCTCGGCGGGGCAGCAAGGGCCGCAGGGTGTGCATGCGTCACCTATTGCC
TTTTCCTCCTCCCAACATGCTACCCCTTGGGGGAAAACTGCCGAAGAGAA
ATCGGGACAAACTCTGAAAGAAAAGGGTCTTACAAGTATCATGGAGGCTT
TTAAACCCACCTTTCACCTTAAGGCCGACCAGGCTGGCTCTGTGCATGCA
GTCGACGTCGAGACAGGGACTGGGATGGACCAGACCACGGGGGCTGTCCT
GGCCGCAACGCTCCAGAGCCTGCCTACTGCCGCGCAGGAAAAGAGAGAAG
CAGCCATCAATCATCCACAAGAGGCGTCCTCAAAGAGGAGGCTTACACTG
GATGCCCTGGAAGAGCTCGAAGGGGGGAAACGCCGGCCCGTCCCGGATCG
AGAGGACATCATCAGCATGCAAGAGCGGAAGGAGCGCGTGGAAGAAGGCA
TGCGACGGACTTCGCTTTGTAATTTGATGAACCAACCGGCAGGAGCGGAT
AGGAGAATTACAAGGGCAGGGGTTCGTTGCAATACCGCGAGTCAATCGCG
ACACGGCCATCGAAGCTACCAAGGCTGGGTGAAGATGTTCCGGCGCAAGT
GGTTCATGGTCTTGTTGCCTCCAGGGAAGCCTGTGATAAGCAGTGCGGAG
CCCGAGGAAGCCGTACCACTTAATTGCTCACAATCAGGAAAGGATGCGTT
GCCTGGAGTACCTCACGTAGCACGAGCGTCCGACTCAATGATAGTGACAG
GAATGGAGGCACTACCTCGTCTCGCATTATACCATAGTCCGAAAGACCTA
CAAAACCACAAGCCTCCCAAAGAAATGATAAGTTTATCTGCTGATTCCAT
CATAGACTCTCGCAGGTTATCTACATCTATCAACCCTAGTATCGCCACAA
AGAGCAGCGGGAGCAAGACTTCGTCTTCTACAAAACCATGTATCGACGCC
GCGGAGTCCTCGTTTGTCGACACGCAGGAGCCGGACACCGTGATCGACAT
TTTACTAACAAGCAGTCGAACAGGATTGCTTAAAACCTACACCATTCAGT
GCTTTTCTGTCGAGGAGGAAAATCGATGGATTTCAGAGCTTCAGCAAGCA
ATTGGCTCGCTGGCAGGCGATGAGGAATACGGAAACAGTCCGAGTCTCTT
CAACGGTCTGGATGGCCTTTCCCACGAGCTCTGTGAACACCTTATGACCC
ATACGTGCTGCATACTTTCATAACTGATAGTTTCAAAATTGATATTGCCG
CGCATGCGCATTCCTGCGCGCAAAATTATCAGTTTCTCCATTTTTTGTCT
GCAAATTTCTGTGCCACAATTGCATCTTTCAAGCTTCGGTAAGAAGTTTC
ATGCATTTGATAAATTTTAATTTTTAAAGAAACACACAAAGTTTTTCAAT
GATA

protein sequence of rna889

>rna889-protein ID=rna889-protein|Name=rna889|organism=Nannochloropsis gaditana|type=polypeptide|length=632bp
MSPFKRSQGIWMLDCNLPPSCALNSHTSTVSHVRRFKLMAAFNKCRVKKL
INDPKDIVEEAVEGMLLSHPKTLTRLEGLHVILRTDFDALKSKQIALISG
GGSGHEPAHCGFVADGMLTAAVLGGVFASPSVASILAAIRAVTGPRGSLL
IVKRYTGDLLNFGMAREQALSEGMHVEMVVVADDCALSPSKGITGRRGVA
GTVLVHKIAGAAAAAGLPLLDVKREAEEAIANMGSLGLALSVCTVPGSEP
SVRLDGDTIEMGMGIHGEEGIERMPLFPVNALVERMVRIIVSTEEKGGHG
YLPLSPHQDIALLVNNMGATPAIELSLVVRRAVKVLEEPPILARVCRIFV
GPFMTSLEMAGVSITILRVQTQTLARLDASSTAPGWLSAEIRTPDVKRVP
VPVPLPPEIDAGSTREQAAHGQQVLPCDVWAQYLASSQAVARALIQAKQQ
LNDLDAIGGDGDCGMTLERGARAVLSLCSSESGMTPPPNASTFVTSLANA
VSDSMGGTFGALLEILLRALARSLMEQHASVPAPGEWATALQHGIERMTF
YGGARPGYRTMLDALMPASEALVAREGLKRAAEAARVGAERTKKFVALAG
RANYVSPSVTQGHNDPGAEAVAIAFAAMKEEL

mRNA from alignment at CM002456.1:652348..654490-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna889 ID=rna889|Name=rna889|organism=Nannochloropsis gaditana|type=mRNA|length=2143bp|location=Sequence derived from alignment at CM002456.1:652348..654490- (Nannochloropsis gaditana)
CATCTCCAAGGGCCCACAACCCGTGCAAAGCTACATTAAATTTCGATGTG
GGGTATTCTCTCTGAAAGTTGCTCTCAAAGAAAGAAGCCACTTCTCTAAT
GTCACCGTTCAAGCGAAGTCAGGGTATTTGGATGCTGGATTGTAACCTCC
CGCCTTCGTGCGCGTTGAACTCACACACCAGTACTGTTTCTCATGTCAGA
AGGTTTAAACTTATGGCCGCGTTTAACAAATGTAGGGTGAAAAAACTCAT
CAATGATCCTAAAGATATCGTCGAGGAAGCGGTGGAAGGCATGTTGCTGA
GTCATCCCAAAACCTTGACCCGCCTGGAAGGCCTGCACGTCATCTTGCGC
ACTGATTTTGATGCACTGAAATCGAAGCAGATAGCGCTCATCTCAGGTGG
AGGAAGTGGTCATGAGCCAGCACACTGTGGCTTTGTTGCAGACGGAATGC
TTACCGCGGCTGTTCTTGGTGGTGTATTTGCCTCACCAAGTGTTGCGAGC
ATTTTGGCGGCCATCCGGGCGGTGACAGGGCCCAGGGGGTCTCTGCTCAT
CGTCAAGCGCTACACAGGCGATCTCCTTAACTTTGGCATGGCTCGCGAGC
AAGCACTGAGCGAGGGCATGCATGTTGAGATGGTGGTGGTGGCAGATGAC
TGCGCCTTGTCTCCAAGCAAGGGGATCACGGGCAGGCGGGGGGTCGCGGG
GACCGTACTGGTGCACAAGATAGCGGGTGCCGCCGCCGCCGCAGGATTAC
CGTTACTGGATGTTAAACGGGAGGCAGAGGAAGCGATCGCCAACATGGGC
AGTTTGGGCCTGGCCCTTTCTGTTTGCACGGTACCTGGTTCCGAGCCCTC
GGTGCGGTTAGACGGCGATACCATCGAGATGGGAATGGGGATCCACGGCG
AGGAGGGAATAGAGCGTATGCCTCTTTTTCCGGTCAACGCTTTGGTCGAG
CGAATGGTCCGCATAATCGTCAGCACTGAAGAGAAGGGAGGACATGGTTA
TCTTCCGTTGAGTCCACATCAAGACATCGCCTTGCTGGTAAACAACATGG
GAGCGACGCCTGCAATCGAGCTGAGCCTAGTAGTCCGGCGCGCGGTGAAG
GTACTGGAGGAGCCTCCTATCCTTGCTAGGGTCTGTCGGATCTTCGTGGG
ACCCTTCATGACCTCCCTTGAGATGGCCGGGGTGTCGATCACTATTCTTC
GGGTTCAGACTCAGACGTTGGCTCGATTGGATGCCTCCAGCACGGCGCCC
GGGTGGCTCTCGGCGGAAATACGAACCCCAGATGTAAAACGTGTCCCTGT
ACCTGTGCCCTTACCTCCCGAGATAGATGCCGGGTCCACGCGTGAACAAG
CCGCACACGGGCAACAGGTGCTTCCCTGCGATGTCTGGGCGCAGTATCTC
GCTTCAAGTCAGGCTGTCGCTCGCGCCTTAATTCAGGCCAAGCAGCAATT
GAATGACCTGGACGCCATTGGGGGGGATGGAGATTGCGGTATGACTCTGG
AGCGAGGAGCCAGGGCGGTTCTTTCTTTGTGTTCTAGCGAGTCAGGAATG
ACGCCGCCGCCTAATGCCTCTACATTCGTTACCTCTTTGGCGAATGCCGT
GAGCGACTCAATGGGTGGGACTTTTGGAGCACTTCTCGAAATTTTATTGC
GTGCTTTGGCGCGCTCCCTTATGGAACAGCATGCTTCAGTACCTGCGCCA
GGAGAATGGGCAACGGCCCTTCAACACGGCATAGAGCGGATGACTTTCTA
TGGAGGGGCCCGACCAGGGTACCGTACCATGTTGGACGCATTAATGCCCG
CAAGCGAGGCTTTGGTCGCCCGCGAAGGCTTGAAAAGAGCCGCAGAGGCA
GCTAGGGTAGGCGCGGAAAGAACGAAAAAGTTTGTGGCGTTGGCAGGGCG
TGCCAACTATGTGTCGCCCTCCGTGACACAAGGCCACAATGACCCGGGCG
CAGAAGCCGTGGCCATTGCCTTCGCGGCGATGAAGGAAGAATTGTAGAGT
GAGCAAGTGGAGCAATATCATTGAAAAACTTTGTGTGTTTCTTTAAAAAT
TAAAATTTATCAAATGCATGAAACTTCTTACCGAAGCTTGAAAGATGCAA
TTGTGGCACAGAAATTTGCAGACAAAAAATGGAGAAACTGATA

Coding sequence (CDS) from alignment at CM002456.1:652348..654490-

>rna889 ID=rna889|Name=rna889|organism=Nannochloropsis gaditana|type=CDS|length=1899bp|location=Sequence derived from alignment at CM002456.1:652348..654490- (Nannochloropsis gaditana)
ATGTCACCGTTCAAGCGAAGTCAGGGTATTTGGATGCTGGATTGTAACCT
CCCGCCTTCGTGCGCGTTGAACTCACACACCAGTACTGTTTCTCATGTCA
GAAGGTTTAAACTTATGGCCGCGTTTAACAAATGTAGGGTGAAAAAACTC
ATCAATGATCCTAAAGATATCGTCGAGGAAGCGGTGGAAGGCATGTTGCT
GAGTCATCCCAAAACCTTGACCCGCCTGGAAGGCCTGCACGTCATCTTGC
GCACTGATTTTGATGCACTGAAATCGAAGCAGATAGCGCTCATCTCAGGT
GGAGGAAGTGGTCATGAGCCAGCACACTGTGGCTTTGTTGCAGACGGAAT
GCTTACCGCGGCTGTTCTTGGTGGTGTATTTGCCTCACCAAGTGTTGCGA
GCATTTTGGCGGCCATCCGGGCGGTGACAGGGCCCAGGGGGTCTCTGCTC
ATCGTCAAGCGCTACACAGGCGATCTCCTTAACTTTGGCATGGCTCGCGA
GCAAGCACTGAGCGAGGGCATGCATGTTGAGATGGTGGTGGTGGCAGATG
ACTGCGCCTTGTCTCCAAGCAAGGGGATCACGGGCAGGCGGGGGGTCGCG
GGGACCGTACTGGTGCACAAGATAGCGGGTGCCGCCGCCGCCGCAGGATT
ACCGTTACTGGATGTTAAACGGGAGGCAGAGGAAGCGATCGCCAACATGG
GCAGTTTGGGCCTGGCCCTTTCTGTTTGCACGGTACCTGGTTCCGAGCCC
TCGGTGCGGTTAGACGGCGATACCATCGAGATGGGAATGGGGATCCACGG
CGAGGAGGGAATAGAGCGTATGCCTCTTTTTCCGGTCAACGCTTTGGTCG
AGCGAATGGTCCGCATAATCGTCAGCACTGAAGAGAAGGGAGGACATGGT
TATCTTCCGTTGAGTCCACATCAAGACATCGCCTTGCTGGTAAACAACAT
GGGAGCGACGCCTGCAATCGAGCTGAGCCTAGTAGTCCGGCGCGCGGTGA
AGGTACTGGAGGAGCCTCCTATCCTTGCTAGGGTCTGTCGGATCTTCGTG
GGACCCTTCATGACCTCCCTTGAGATGGCCGGGGTGTCGATCACTATTCT
TCGGGTTCAGACTCAGACGTTGGCTCGATTGGATGCCTCCAGCACGGCGC
CCGGGTGGCTCTCGGCGGAAATACGAACCCCAGATGTAAAACGTGTCCCT
GTACCTGTGCCCTTACCTCCCGAGATAGATGCCGGGTCCACGCGTGAACA
AGCCGCACACGGGCAACAGGTGCTTCCCTGCGATGTCTGGGCGCAGTATC
TCGCTTCAAGTCAGGCTGTCGCTCGCGCCTTAATTCAGGCCAAGCAGCAA
TTGAATGACCTGGACGCCATTGGGGGGGATGGAGATTGCGGTATGACTCT
GGAGCGAGGAGCCAGGGCGGTTCTTTCTTTGTGTTCTAGCGAGTCAGGAA
TGACGCCGCCGCCTAATGCCTCTACATTCGTTACCTCTTTGGCGAATGCC
GTGAGCGACTCAATGGGTGGGACTTTTGGAGCACTTCTCGAAATTTTATT
GCGTGCTTTGGCGCGCTCCCTTATGGAACAGCATGCTTCAGTACCTGCGC
CAGGAGAATGGGCAACGGCCCTTCAACACGGCATAGAGCGGATGACTTTC
TATGGAGGGGCCCGACCAGGGTACCGTACCATGTTGGACGCATTAATGCC
CGCAAGCGAGGCTTTGGTCGCCCGCGAAGGCTTGAAAAGAGCCGCAGAGG
CAGCTAGGGTAGGCGCGGAAAGAACGAAAAAGTTTGTGGCGTTGGCAGGG
CGTGCCAACTATGTGTCGCCCTCCGTGACACAAGGCCACAATGACCCGGG
CGCAGAAGCCGTGGCCATTGCCTTCGCGGCGATGAAGGAAGAATTGTAG

Synonyms

Publications