rna8883, rna8883 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8883
Unique Name	rna8883
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1498
Alignment location	KK037250.1:386728..388583 +

Link to JBrowse

Properties


Property Name	Value
Product	5 -nucleotidase domain-containing
Orig transcript id	gnl\|cribi\|Naga_100431g2.10745.mrna
Orig protein id	gnl\|cribi\|Naga_100431g2.10745
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:386728..388583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100431g2	gene8612	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8883	rna8883-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21819.1	cds8853	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:386728..388583+
coding sequence from alignment at KK037250.1:386728..388583+

mRNA sequence

>rna8883 ID=rna8883|Name=rna8883|organism=Nannochloropsis gaditana|type=mRNA|length=1498bp
ATGCGGAGGGGTACTTGGCCCATAGGGTGGGCGAGGTCCTCCACGGCCGG
TACGAAGGGCGCGGCCTTGGCGCCCGCCTCGATCACGCCGGACTTGGGTT
TCGCTTTTGGAGAAGAAAAATCGCACTGCCTGCTCTACGGCGAGGCTGAG
CCGCGCCTTCCCCCACTAGGGAGGCCGGACGCCTTGGGCCCGTCGTCCCA
TTTGGGGTGCCACACGCTCACTTCTGCCTTGTGCTGCCCTGCCTGCATCC
TCGGCGTCAAGGGACGCGGTGTCTTCAGCTCCGTCCTCGTGGCCCACGAC
ACGCAAGCCGTCCCCACCTCTCCCCTCGGGCCCTCGCCCAGGACGGTGGC
CATCAAGGTCTTGCGGGGCAACGACTTGATGTTGCAGGCAGGCCTGAAAG
AGGCGGCACTCCTCCGCGCCCTGACAGAAGGGGACAAGAGGGACGAGGGG
CACGTGGTTCGCTTTCACGAGGAGTTCAGGCTGGGGGGTCACGTGTGCGT
GGTGATGGAGGCGATGCACCTGAACCTGAGGAAGCTTTTGAAGACCTATG
GGCCCTCGCAGGGACTGGCCATCAAGGCCGTCCTTTCCTACGCGCAACAG
CTGCTCGTCGGCCTGGCCTACCTGGAGCAGCAAGGCGTCGCGCACGCTGA
CCTCAAGCCCGACAATTTAGTCGTGGATACCTCCATGTCCGTCTTGAAGA
TCTGCGACTTCGGCTCGGCGCTCCACACCAACGAGCTGGGAGGGAACGAG
GCAGAGGAGGCAGCTACTAGCACGCCGTACCTGCAATCACGCTTCTATCG
GGCCCCCGAGGTGATACTGGGGTACCCGCCCCGCGGGCCGGCCATGGACA
TGTGGAGCGCGGGCACTACTATGTATGAGCTCTACACGGCCCGGGTGCTC
TTCCCCGGCCGGCACAACAACGAGGTGCTTCGACAAATGATGGAAGTGAG
GGGTCCGTTCTCGCGGAAGTTGCTAAAAAAGGCCAGCCCAGGGCTCAGGA
GCCAACATTTCGACGAGGAGGGCATGTTCCTGGCGCGTGAATTGGACAAG
GGGAGTCAAGTGGAAAGCGTGCGGGCACTACCCCCTCCCACGGGCCCAAG
TAGGCAATTAGGGGAGATGCTCTGCTCCCCCAAGATCATGGCCAGAATGC
CGTCACAAACTCGGCAACAGGTCGAGCTTTTGCGTGGTTTTTTGGAGCAA
GCTTTAGTCTTGGACCCAGCCAAGCGAGCGAGACCCGTCCAGGCGCTCCA
ACTTTTCAAGGGAAGAGGGAGCGGAGGGAAAAAGTGAGGGAGAGAAGTGC
GATTTGCACTCGCATACTAGATGAACTTTGTGCTTTGTCGGTAAGCGTGC
GGTCGCTGCATGTTCATAGCGGTAGAACGGGGATGATTGTGTCATAGGGG
GGGTAATGTGCGCGGGATATATGACGGCCTGGAAAGGAGAGCACTTTTGT
AATGATAAATAAAACCGAGCAAAGACAATCACACACATGTAATTTCAA

protein sequence of rna8883

>rna8883-protein ID=rna8883-protein|Name=rna8883|organism=Nannochloropsis gaditana|type=polypeptide|length=592bp
MSFRISKARVTFRAVRNASKGSGRLYRCFRTVSTSTKRGPSLSDITHPHP
RVNRLLREYLAKMEQESADLPNSLQQPGYQVKQSLPRKDRIFVNNSINLG
KVDVLGFDYDYTLVSYTHKMEGLIYSMAKDYLIEHSGYPSEMKTRRMYDP
RFAVRGLAVDVDRGWVLKLSYIHQIALRTVFCGRRRLSKEEVVAAYGDGA
HVSPQYRNNHMKPLLDLFALSEACLVADVLDYLNELNIHHDRQAVVEDVL
QAISHVHTSGEMHKTVVRDPPTYMLPSPHLRETLMRFRDVGKKLFLCSNS
NFEYVSGGLQFLLGADWQEFFDVVIVSAGKPGFYTSNRPFRQVDKRTGKI
RWTEVTTLEKGKVYSHGSLEGLTKLTGWQGPRVLYIGDQIWADLVGGRRN
QGWRTGAVIRELEYELVVQQSKKYRQYAHQAVTVTELLRLVQEEMEKIRT
EADVRVSDGLEEYLRYLQTEMSKMFNANFGSVFRSGGEPTLFAFSLRRYA
DLYLSKLENFRFYSPMHRFYPQRGISMPHDPYIPAIGRPPPATGDEKASG
GQEWASVGINAVPEDKTSRKEGRAGVSSVSCMAGGTRRRQDS

mRNA from alignment at KK037250.1:386728..388583+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8883 ID=rna8883|Name=rna8883|organism=Nannochloropsis gaditana|type=mRNA|length=1856bp|location=Sequence derived from alignment at KK037250.1:386728..388583+ (Nannochloropsis gaditana)
ATGTCCTTTCGCATAAGCAAGGCGAGAGTGACCTTTAGAGCGGTCAGAAA
TGCCAGTAAGGGTAGCGGCAGATTATACCGGTGCTTTCGCACAGTCTCTA
CCAGCACCAAGCGTGGTCCATCATTGAGCGACATTACACACCCCCATCCG
CGGGTAAATCGGCTACTCCGCGAATACTTGGCCAAAATGGAGCAAGAGAG
TGCAGATTTACCTAATTCCCTGCAGCAACCGGGGTACCAAGTGAAGCAAA
GCCTGCCGCGCAAAGACCGCATATTCGTCAATAACTCGATAAATCTGGGC
AAAGTCGACGTATTAGGTTTTGATTATGATTATACACTTGTGAGTTACAC
CCACAAAATGGAAGGGCTGATTTACAGCATGGCCAAGGACTACCTGATCG
AGCATTCGGGTTACCCGTCAGAAATGAAGACACGTCGAATGTACGATCCA
CGCTTTGCTGTTCGAGGGCTAGCGGTAGATGTAGACCGAGGATGGGTGCT
GAAGCTTAGCTACATACACCAAATAGCACTCCGGACAGTATTCTGTGGGC
GTCGGCGCCTGAGCaaagaggaagtggtggcTGCGTACGGCGACGGTGCT
CATGTCTCTCCACAATACCGGAACAACCACATGAAACCGCTTCTGGATTT
GTTTGCCTTGTCGGAGGCTTGTCTAGTTGCGGATGTCCTGGATTACTTGA
ACGAGTTGAATATTCACCATGACCGGCAGGCAGTAGTGGAAGACGTCTTA
CAAGCAATCAGTCATGTCCACACAAGTGGAGAGATGCATAAGACCGTGGT
GCGAGACCCTCCCACCTACATGCTACCCTCTCCACACCTGCGCGAAACAT
TGATGCGTTTCCGCGATGTCGGGAAAAAGCTGTTTCTGTGCTCCAACTCC
AATTTTGAGTACGTTTCTGGCGGCCTGCAATTTTTGCTGGGGGCGGACTG
GCAGGAGTTCTTTGACGTGGTCATCGTCTCTGCGGGAAAGCCAGGGTTCT
ACACATCCAACCGACCCTTCCGTCAGGTAGACAAGCGTACGGGGAAGATT
CGTTGGACGGAAGTGACCACAttagagaaagggaaggtctATTCGCACGG
CTCCCTGGAAGGCCTGACCAAATTGACGGGCTGGCAGGGGCCGCGGGTCT
TGTACATCGGCGACCAGATCTGGGCGGACCTGGTGGGGGGTCGACGGAAT
CAGGGATGGCGCACTGGAGCCGTCATCCGAGAGTTGGAGTACGAGTTGGT
GGTGCAGCAGTCCAAAAAATACAGGCAGTACGCCCATCAAGCCGTCACGG
TCACGGAACTGCTGCGCCTGGttcaggaggaaatggagaagaTCCGGACC
GAGGCCACGCAGGCGGCCGCGAAGAccaccggggggggggaggtaagGCC
TCGGAGACGCTCCCTTACCTATTGCAAGAGGCGGACGTGCGAGTCTCgga
cggcctggaggagTATCTGCGGTACTTACAGACGGAGATGTCCAAGATGT
TCAACGCAAACTTCGGCTCTGTCTTTCGTTCGGGGGGGGAGCCCACGCTC
TTTGCATTCTCATTGCGACGGTATGCGGACCTGTACCTGAGTAAGCTGGA
GAACTTCCGTTTCTACTCTCCCATGCACCGCTTTTATCCGCAACGGGGCA
TCTCCATGCCGCACGACCCTTACATCCCGGCGATCGggcgcccccctccc
gcgacGGGCGACGAAAAAGCAAGCGGGGGCCAGGAATGGGCGAGCGTGGG
CATAAATGCCGTGCCTGAAGACAAGAcatcgaggaaggaaggccgTGCGG
GGGTATCGTCAGTGTCGTGTATGGCTGGTGGAACTAGACGGCGCCAGGAT
TCCTAG

Coding sequence (CDS) from alignment at KK037250.1:386728..388583+

>rna8883 ID=rna8883|Name=rna8883|organism=Nannochloropsis gaditana|type=CDS|length=3558bp|location=Sequence derived from alignment at KK037250.1:386728..388583+ (Nannochloropsis gaditana)
ATGTCCTTTCGCATAAGCAAGGCGAGAGTGACCTTTAGAGCGGTCAGAAA
TGCCAGTAAGGGTAGCGGCAGATTATACCGGTGCTTTCGCACAGTCTCTA
CCAGCACCAAGCGTGGTCCATCATTGAGCGACATTACACACCCCCATCCG
CGGGTAAATCGGCTACTCCGCGAATACTTGGCCAAAATGGAGCAAGAGAG
TGCAGATTTACCTAATTCCCTGCAGCAACCGGGGTACCAAGTGAAGCAAA
GCCTGCCGCGCAAAGACCGCATATTCGTCAATAACTCGATAAATCTGGGC
AAAGTCGACGTATTAGGTTTTGATTATGATTATACACTTGTGAGTTACAC
CCACAAAATGGAAGGGCTGATTTACAGCATGGCCAAGGACTACCTGATCG
AGCATTCGGGTTACCCGTCAGAAATGAAGACACGTCGAATGTACGATCCA
CGCTTTGCTGTTCGAGGGCTAGCGGTAGATGTAGACCGAGGATGGGTGCT
GAAGCTTAGCTACATACACCAAATAGCACTCCGGACAGTATTCTGTGGGC
GTCGGCGCCTGAGCaaagaggaagtggtggcTGCGTACGGCGACGGTGCT
CATGTCTCTCCACAATACCGGAACAACCACATGAAACCGCTTCTGGATTT
GTTTGCCTTGTCGGAGGCTTGTCTAGTTGCGGATGTCCTGGATTACTTGA
ACGAGTTGAATATTCACCATGACCGGCAGGCAGTAGTGGAAGACGTCTTA
CAAGCAATCAGTCATGTCCACACAAGTGGAGAGATGCATAAGACCGTGGT
GCGAGACCCTCCCACCTACATGCTACCCTCTCCACACCTGCGCGAAACAT
TGATGCGTTTCCGCGATGTCGGGAAAAAGCTGTTTCTGTGCTCCAACTCC
AATTTTGAGTACGTTTCTGGCGGCCTGCAATTTTTGCTGGGGGCGGACTG
GCAGGAGTTCTTTGACGTGGTCATCGTCTCTGCGGGAAAGCCAGGGTTCT
ACACATCCAACCGACCCTTCCGTCAGGTAGACAAGCGTACGGGGAAGATT
CGTTGGACGGAAGTGACCACAttagagaaagggaaggtctATTCGCACGG
CTCCCTGGAAGGCCTGACCAAATTGACGGGCTGGCAGGGGCCGCGGGTCT
TGTACATCGGCGACCAGATCTGGGCGGACCTGGTGGGGGGTCGACGGAAT
CAGGGATGGCGCACTGGAGCCGTCATCCGAGAGTTGGAGTACGAGTTGGT
GGTGCAGCAGTCCAAAAAATACAGGCAGTACGCCCATCAAGCCGTCACGG
TCACGGAACTGCTGCGCCTGGttcaggaggaaatggagaagaTCCGGACC
GAGGCGGACGTGCGAGTCTCggacggcctggaggagTATCTGCGGTACTT
ACAGACGGAGATGTCCAAGATGTTCAACGCAAACTTCGGCTCTGTCTTTC
GTTCGGGGGGGGAGCCCACGCTCTTTGCATTCTCATTGCGACGGTATGCG
GACCTGTACCTGAGTAAGCTGGAGAACTTCCGTTTCTACTCTCCCATGCA
CCGCTTTTATCCGCAACGGGGCATCTCCATGCCGCACGACCCTTACATCC
CGGCGATCGggcgcccccctcccgcgacGGGCGACGAAAAAGCAAGCGGG
GGCCAGGAATGGGCGAGCGTGGGCATAAATGCCGTGCCTGAAGACAAGAc
atcgaggaaggaaggccgTGCGGGGGTATCGTCAGTGTCGTGTATGGCTG
GTGGAACTAGACGGCGCCAGGATTCCTAGATGTCCTTTCGCATAAGCAAG
GCGAGAGTGACCTTTAGAGCGGTCAGAAATGCCAGTAAGGGTAGCGGCAG
ATTATACCGGTGCTTTCGCACAGTCTCTACCAGCACCAAGCGTGGTCCAT
CATTGAGCGACATTACACACCCCCATCCGCGGGTAAATCGGCTACTCCGC
GAATACTTGGCCAAAATGGAGCAAGAGAGTGCAGATTTACCTAATTCCCT
GCAGCAACCGGGGTACCAAGTGAAGCAAAGCCTGCCGCGCAAAGACCGCA
TATTCGTCAATAACTCGATAAATCTGGGCAAAGTCGACGTATTAGGTTTT
GATTATGATTATACACTTGTGAGTTACACCCACAAAATGGAAGGGCTGAT
TTACAGCATGGCCAAGGACTACCTGATCGAGCATTCGGGTTACCCGTCAG
AAATGAAGACACGTCGAATGTACGATCCACGCTTTGCTGTTCGAGGGCTA
GCGGTAGATGTAGACCGAGGATGGGTGCTGAAGCTTAGCTACATACACCA
AATAGCACTCCGGACAGTATTCTGTGGGCGTCGGCGCCTGAGCaaagagg
aagtggtggcTGCGTACGGCGACGGTGCTCATGTCTCTCCACAATACCGG
AACAACCACATGAAACCGCTTCTGGATTTGTTTGCCTTGTCGGAGGCTTG
TCTAGTTGCGGATGTCCTGGATTACTTGAACGAGTTGAATATTCACCATG
ACCGGCAGGCAGTAGTGGAAGACGTCTTACAAGCAATCAGTCATGTCCAC
ACAAGTGGAGAGATGCATAAGACCGTGGTGCGAGACCCTCCCACCTACAT
GCTACCCTCTCCACACCTGCGCGAAACATTGATGCGTTTCCGCGATGTCG
GGAAAAAGCTGTTTCTGTGCTCCAACTCCAATTTTGAGTACGTTTCTGGC
GGCCTGCAATTTTTGCTGGGGGCGGACTGGCAGGAGTTCTTTGACGTGGT
CATCGTCTCTGCGGGAAAGCCAGGGTTCTACACATCCAACCGACCCTTCC
GTCAGGTAGACAAGCGTACGGGGAAGATTCGTTGGACGGAAGTGACCACA
ttagagaaagggaaggtctATTCGCACGGCTCCCTGGAAGGCCTGACCAA
ATTGACGGGCTGGCAGGGGCCGCGGGTCTTGTACATCGGCGACCAGATCT
GGGCGGACCTGGTGGGGGGTCGACGGAATCAGGGATGGCGCACTGGAGCC
GTCATCCGAGAGTTGGAGTACGAGTTGGTGGTGCAGCAGTCCAAAAAATA
CAGGCAGTACGCCCATCAAGCCGTCACGGTCACGGAACTGCTGCGCCTGG
ttcaggaggaaatggagaagaTCCGGACCGAGGCGGACGTGCGAGTCTCg
gacggcctggaggagTATCTGCGGTACTTACAGACGGAGATGTCCAAGAT
GTTCAACGCAAACTTCGGCTCTGTCTTTCGTTCGGGGGGGGAGCCCACGC
TCTTTGCATTCTCATTGCGACGGTATGCGGACCTGTACCTGAGTAAGCTG
GAGAACTTCCGTTTCTACTCTCCCATGCACCGCTTTTATCCGCAACGGGG
CATCTCCATGCCGCACGACCCTTACATCCCGGCGATCGggcgcccccctc
ccgcgacGGGCGACGAAAAAGCAAGCGGGGGCCAGGAATGGGCGAGCGTG
GGCATAAATGCCGTGCCTGAAGACAAGAcatcgaggaaggaaggccgTGC
GGGGGTATCGTCAGTGTCGTGTATGGCTGGTGGAACTAGACGGCGCCAGG
ATTCCTAG

Synonyms

Publications