rna8882, rna8882 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna8882
Unique Name	rna8882
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1566
Alignment location	KK037250.1:384542..386501 +

Link to JBrowse

Properties


Property Name	Value
Product	serine threonine-protein kinase
Orig transcript id	gnl\|cribi\|Naga_100431g1.10747.mrna
Orig protein id	gnl\|cribi\|Naga_100431g1.10747
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037250.1	supercontig	KK037250.1:384542..386501 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100431g1	gene8611	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna8882	rna8882-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM21821.1	cds8852	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037250.1:384542..386501+
coding sequence from alignment at KK037250.1:384542..386501+

mRNA sequence

>rna8882 ID=rna8882|Name=rna8882|organism=Nannochloropsis gaditana|type=mRNA|length=1566bp
ATGGGATCTGACAAGAGTACTGCAAAGGGAAATTTGGACCTGAGCAAGCA
ACAACAAGGATACCAGGACGGGAGGACTTGGAATATGCGTACAATGCGAC
TCAGCCATGCTGGCTGTGCGCTTTTAACGATGACATGTGCGCATGGCTTT
ACGCGTCCATATTTCCGCACGACAAGGATCGATATTAGACGGGCGCGAAA
TGAGCCCCAGTCAGCGCCCTTGCCTTTATCCTGCGGCTGTGTCCATCTCT
CGCGCAGTAAGCGCCTTCAAGGACATAGCTTTAAGGAAGACGAAGCCTCA
GCAACCATTCAGGCCAACAACGAATGGACAGAGCCGTGGACGGGTGCCGA
AAGCAATGACCTGGTCCGCATCATTTTCGACTGCTACGAAAAAGACAGGA
TGCTCATCGACCCCTGGCTCCTCTCCGAGCTTTTACTCGAGACCGGCGCG
TACAGCAGTCAGATTGAGGACGCCGCCAAGGACACGAGGGACGAGACGCC
TATCTTTGGGGAGCACGGGGAGCCTGCCTGCAGCGAGAAAATCTGGAACC
GCAGCCTGGTCATGGCGGACTATGGCCTTGATGTGGACGTAGGGTCCGTG
CTGTCGTTGATCAAGGAGGCGTTTCAACTCGGTGCATCCTACCCTGTGCG
GTACCGCCTGGAGAGAATTGTGGACCGGGACTGGCAGAAGGAGGTGCAAG
AGAGTTGGAAGCCGCTCTTGCTGGGAGACCGGCTGCTGGTCAAGTTCACG
TGGCACGAGGAGGAGGACGTGAAGGCCCTCTTGGCCTCCCGCACGGCTGT
GGAGGACGTGAAAGTGCTGGCATTGGAAGGTGGCGCGGCCTTTGGGAGTG
GCGAACACCCAACGACGGTCATGTGCTGCGCCTGGTTGCAGAGTCATCTG
GCAGCAGAGTCCGCCAAAGCGGGAACCGATGGAGGGGAAGGACTCAGTGT
GTGTGACTATGGGGCAGGTAGTGGGATCTTGGCTATGGCAGCGTTGCTGT
TCGGGGCGGGCACGGCTTTTGGCGTGGAGATCGATGTGTTTGCGATACAG
AGCGCCTATCGTAACGCGGAGATGAACGGGCTGCAGATGGCATTTGTGCA
GCCAGTGGAGACTAGAACTGAGGGCACCGAAGGTGGAATTGCATGCGTGA
CGTATCAACTGGTACAGCCGGATGGCAGCGTGGACGAGGAGGACGAAGAG
GTACAGATTGCACCTACAGACGTGATGCTGGCTAACATCTTGAAGCGACC
GCTTATAGAGCTCTCGAAGCAAATTTCGAGCCTGACAAAGCTGGAGGGTG
GTAAGGTGGCGCTAGCGGGATTATTGGAAGAGCAAGCCGAGGATGTCATG
GCGGCCTACCGGCCGTACTTCCCAGATATCGCGCCGGCAGATCAAGAGGG
GGAGTGGGTTTTGCTGGTGGGGACAAGGAATGACGTGCCCGTCGTACTCC
CGTGACGAAAACTGGAGGAGACATCTCTTCTGAGAAATGCAAAGTACACA
GCGAACATTAAATTAGAAAAGGTCAAGAAAATTTGCAGAAATGAAGCATT
CGATACGGACGTGCTT

protein sequence of rna8882

>rna8882-protein ID=rna8882-protein|Name=rna8882|organism=Nannochloropsis gaditana|type=polypeptide|length=428bp
MRRGTWPIGWARSSTAGTKGAALAPASITPDLGFAFGEEKSHCLLYGEAE
PRLPPLGRPDALGPSSHLGCHTLTSALCCPACILGVKGRGVFSSVLVAHD
TQAVPTSPLGPSPRTVAIKVLRGNDLMLQAGLKEAALLRALTEGDKRDEG
HVVRFHEEFRLGGHVCVVMEAMHLNLRKLLKTYGPSQGLAIKAVLSYAQQ
LLVGLAYLEQQGVAHADLKPDNLVVDTSMSVLKICDFGSALHTNELGGNE
AEEAATSTPYLQSRFYRAPEVILGYPPRGPAMDMWSAGTTMYELYTARVL
FPGRHNNEVLRQMMEVRGPFSRKLLKKASPGLRSQHFDEEGMFLARELDK
GSQVESVRALPPPTGPSRQLGEMLCSPKIMARMPSQTRQQVELLRGFLEQ
ALVLDPAKRARPVQALQLFKGRGSGGKK

mRNA from alignment at KK037250.1:384542..386501+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna8882 ID=rna8882|Name=rna8882|organism=Nannochloropsis gaditana|type=mRNA|length=1960bp|location=Sequence derived from alignment at KK037250.1:384542..386501+ (Nannochloropsis gaditana)
ATGCGGAGGGGTACTTGGCCCATAGGGTGGGCGaggtcctccacggccgg
tacgaaggtgaggagaggaggaagacaggggccggggagggagggaacga
gggaaggagggagggggggcggggagggcgggtaaGAGTGTGCTCACCGG
AGGGGGGATATGACTCCAATCTAATACCCGTGCTGGCAGGGCGCGGCCTT
GGCGCCCGCCTCGATCACGCCGGACTTGGGTTTCGCTTTTGGAGAAGAAA
AATCGCACTGCCTGCTCTACGGCGAGGCTGAGCCGCGCCTTCCCCCACTA
GGGAGGCCGGACGCCTTGGGCCCGTCGTCCCATTTGGGGTGCCACACGCT
CACTTCTGCCTTGTGCTGCCCTGCCTGCGTGTATCTACTATGTGCCAGGG
TCTGACCCGTTACTCCCCCATACTGTTTGGCTCCGCCTCCGTGAATGCCT
GCAGTCTCCTTCCGCGTCCCTGGGGTCCTCGCCGCTTGTctcactctccc
tcccctcccgcccctcctgctcAGATCCTCGGCGTCAAGGGACGCGGTGT
CTTCAGCTCCGTCCTCGTGGCCCACGACACGCAAGCCGtccccacctctc
ccctcggGCCCTCGCCCAGGACGGTGGCCATCAAGGTCTTGCGGGGCAAC
GACTTGATGTTGCAGGCAGGCCTGAAAGAGGCGGCACTCCTCCGCGCCCT
GACAGAAGGGGAcaagagggacgaggggcaCGTGGTTCGCTTTCACGAGG
AGTTCAGGCTGGGGGGTCACGTGTGcgtggtgatggaggcgatgcACCTG
AACCTGAGGAAGCTTTTGAAGACCTATGGGCCCTCGCAGGGACTGGCCAT
CAAGGCCGTCCTTTCCTACGCGCAACAGGTAAGCATGTTTCGCGAAGCTC
GTTTGTGTCATGCGTGTGTCCGAACTGTGTCGCCCGGAAGCGCTTTCCAC
TGAGGGAGGCCCTGCCTGTGAGGCGGGTACAGACTGCGGGCGcgacctcc
cctcgctccgcTTCCGTCCGTCTCACTCCCTTGCACCCTCTCGAACCCAT
GTCCCTCCTCAGCTGCTCGTCGGCCTGGCCTACCTGGAGCAGCAAGGCGT
CGCGCACGCTGACCTCAAGCCCGACAATTTAGTCGTGGATACCTCCATGT
CCGTCTTGAAGATCTGCGACTTCGGCTCGGCGCTCCACACCAACGAgctg
ggagggaacgaggcagaggaggcagctACTAGCACGCCGTACCTGCAATC
ACGCTTCTATCGGGCCCCCGAGGTGATACTGGGGTACCCGCCCCGCGGGC
CGGCCATGGACATGTGGAGCGCGGGCACTACTATGTATGAGCTCTACACG
GCCCGGGTGCTCTTCCCCGGCCGGCACAACAACGAGGTGCTTCGACAAAT
GATGGAAGTGAGGGGTCCGTTCTCGCGGAAGTTGCTAAAAAAGGCCAGCC
CAGGGCTCAGGAGCCAACAtttcgacgaggagggcatgtTCCTGGCGCGT
GAATTGGACAAGGGGAGTCAAGTGGAAAGCGTGCGGGCActaccccctcc
cacgggcCCAAGTAGGCAATTAGGGGAGATGCTCTGCTCCCCCAAGATCA
TGGCCAGAATGCCGTCACAAACTCGGCAACAGGTCGAGCTTTTGCGTGGT
TTTTTGGAGCAAGCTTTAGTCTTGGACCCAGCCAAGCGAGCGAGACCCGT
CCAGGCGCTCCAACTTttcaagggaagagggagcggagggaaaaagtgag
GGAGAGAAGTGCGATTTGCACTCGCATACTAGATGAACTTTGTGCTTTGT
CGGTAAGCGTGCGGTCGCTGCATGTTCATAGCGGTAGAACGGGGATGATT
GTGTCATAGGGGGGGTAATGTGCGCGGGATATATGACGGCCTGGAAAGGA
GAGCACTTTTGTAATGATAAATAAAACCGAGCAAAGACAATCACACACAT
GTAATTTCAA

Coding sequence (CDS) from alignment at KK037250.1:384542..386501+

>rna8882 ID=rna8882|Name=rna8882|organism=Nannochloropsis gaditana|type=CDS|length=5148bp|location=Sequence derived from alignment at KK037250.1:384542..386501+ (Nannochloropsis gaditana)
ATGCGGAGGGGTACTTGGCCCATAGGGTGGGCGaggtcctccacggccgg
tacgaagGGCGCGGCCTTGGCGCCCGCCTCGATCACGCCGGACTTGGGTT
TCGCTTTTGGAGAAGAAAAATCGCACTGCCTGCTCTACGGCGAGGCTGAG
CCGCGCCTTCCCCCACTAGGGAGGCCGGACGCCTTGGGCCCGTCGTCCCA
TTTGGGGTGCCACACGCTCACTTCTGCCTTGTGCTGCCCTGCCTGCATCC
TCGGCGTCAAGGGACGCGGTGTCTTCAGCTCCGTCCTCGTGGCCCACGAC
ACGCAAGCCGtccccacctctcccctcggGCCCTCGCCCAGGACGGTGGC
CATCAAGGTCTTGCGGGGCAACGACTTGATGTTGCAGGCAGGCCTGAAAG
AGGCGGCACTCCTCCGCGCCCTGACAGAAGGGGAcaagagggacgagggg
caCGTGGTTCGCTTTCACGAGGAGTTCAGGCTGGGGGGTCACGTGTGcgt
ggtgatggaggcgatgcACCTGAACCTGAGGAAGCTTTTGAAGACCTATG
GGCCCTCGCAGGGACTGGCCATCAAGGCCGTCCTTTCCTACGCGCAACAG
CTGCTCGTCGGCCTGGCCTACCTGGAGCAGCAAGGCGTCGCGCACGCTGA
CCTCAAGCCCGACAATTTAGTCGTGGATACCTCCATGTCCGTCTTGAAGA
TCTGCGACTTCGGCTCGGCGCTCCACACCAACGAgctgggagggaacgag
gcagaggaggcagctACTAGCACGCCGTACCTGCAATCACGCTTCTATCG
GGCCCCCGAGGTGATACTGGGGTACCCGCCCCGCGGGCCGGCCATGGACA
TGTGGAGCGCGGGCACTACTATGTATGAGCTCTACACGGCCCGGGTGCTC
TTCCCCGGCCGGCACAACAACGAGGTGCTTCGACAAATGATGGAAGTGAG
GGGTCCGTTCTCGCGGAAGTTGCTAAAAAAGGCCAGCCCAGGGCTCAGGA
GCCAACAtttcgacgaggagggcatgtTCCTGGCGCGTGAATTGGACAAG
GGGAGTCAAGTGGAAAGCGTGCGGGCActaccccctcccacgggcCCAAG
TAGGCAATTAGGGGAGATGCTCTGCTCCCCCAAGATCATGGCCAGAATGC
CGTCACAAACTCGGCAACAGGTCGAGCTTTTGCGTGGTTTTTTGGAGCAA
GCTTTAGTCTTGGACCCAGCCAAGCGAGCGAGACCCGTCCAGGCGCTCCA
ACTTttcaagggaagagggagcggagggaaaaagtgaATGCGGAGGGGTA
CTTGGCCCATAGGGTGGGCGaggtcctccacggccggtacgaagGGCGCG
GCCTTGGCGCCCGCCTCGATCACGCCGGACTTGGGTTTCGCTTTTGGAGA
AGAAAAATCGCACTGCCTGCTCTACGGCGAGGCTGAGCCGCGCCTTCCCC
CACTAGGGAGGCCGGACGCCTTGGGCCCGTCGTCCCATTTGGGGTGCCAC
ACGCTCACTTCTGCCTTGTGCTGCCCTGCCTGCATCCTCGGCGTCAAGGG
ACGCGGTGTCTTCAGCTCCGTCCTCGTGGCCCACGACACGCAAGCCGtcc
ccacctctcccctcggGCCCTCGCCCAGGACGGTGGCCATCAAGGTCTTG
CGGGGCAACGACTTGATGTTGCAGGCAGGCCTGAAAGAGGCGGCACTCCT
CCGCGCCCTGACAGAAGGGGAcaagagggacgaggggcaCGTGGTTCGCT
TTCACGAGGAGTTCAGGCTGGGGGGTCACGTGTGcgtggtgatggaggcg
atgcACCTGAACCTGAGGAAGCTTTTGAAGACCTATGGGCCCTCGCAGGG
ACTGGCCATCAAGGCCGTCCTTTCCTACGCGCAACAGCTGCTCGTCGGCC
TGGCCTACCTGGAGCAGCAAGGCGTCGCGCACGCTGACCTCAAGCCCGAC
AATTTAGTCGTGGATACCTCCATGTCCGTCTTGAAGATCTGCGACTTCGG
CTCGGCGCTCCACACCAACGAgctgggagggaacgaggcagaggaggcag
ctACTAGCACGCCGTACCTGCAATCACGCTTCTATCGGGCCCCCGAGGTG
ATACTGGGGTACCCGCCCCGCGGGCCGGCCATGGACATGTGGAGCGCGGG
CACTACTATGTATGAGCTCTACACGGCCCGGGTGCTCTTCCCCGGCCGGC
ACAACAACGAGGTGCTTCGACAAATGATGGAAGTGAGGGGTCCGTTCTCG
CGGAAGTTGCTAAAAAAGGCCAGCCCAGGGCTCAGGAGCCAACAtttcga
cgaggagggcatgtTCCTGGCGCGTGAATTGGACAAGGGGAGTCAAGTGG
AAAGCGTGCGGGCActaccccctcccacgggcCCAAGTAGGCAATTAGGG
GAGATGCTCTGCTCCCCCAAGATCATGGCCAGAATGCCGTCACAAACTCG
GCAACAGGTCGAGCTTTTGCGTGGTTTTTTGGAGCAAGCTTTAGTCTTGG
ACCCAGCCAAGCGAGCGAGACCCGTCCAGGCGCTCCAACTTttcaaggga
agagggagcggagggaaaaagtgaATGCGGAGGGGTACTTGGCCCATAGG
GTGGGCGaggtcctccacggccggtacgaagGGCGCGGCCTTGGCGCCCG
CCTCGATCACGCCGGACTTGGGTTTCGCTTTTGGAGAAGAAAAATCGCAC
TGCCTGCTCTACGGCGAGGCTGAGCCGCGCCTTCCCCCACTAGGGAGGCC
GGACGCCTTGGGCCCGTCGTCCCATTTGGGGTGCCACACGCTCACTTCTG
CCTTGTGCTGCCCTGCCTGCATCCTCGGCGTCAAGGGACGCGGTGTCTTC
AGCTCCGTCCTCGTGGCCCACGACACGCAAGCCGtccccacctctcccct
cggGCCCTCGCCCAGGACGGTGGCCATCAAGGTCTTGCGGGGCAACGACT
TGATGTTGCAGGCAGGCCTGAAAGAGGCGGCACTCCTCCGCGCCCTGACA
GAAGGGGAcaagagggacgaggggcaCGTGGTTCGCTTTCACGAGGAGTT
CAGGCTGGGGGGTCACGTGTGcgtggtgatggaggcgatgcACCTGAACC
TGAGGAAGCTTTTGAAGACCTATGGGCCCTCGCAGGGACTGGCCATCAAG
GCCGTCCTTTCCTACGCGCAACAGCTGCTCGTCGGCCTGGCCTACCTGGA
GCAGCAAGGCGTCGCGCACGCTGACCTCAAGCCCGACAATTTAGTCGTGG
ATACCTCCATGTCCGTCTTGAAGATCTGCGACTTCGGCTCGGCGCTCCAC
ACCAACGAgctgggagggaacgaggcagaggaggcagctACTAGCACGCC
GTACCTGCAATCACGCTTCTATCGGGCCCCCGAGGTGATACTGGGGTACC
CGCCCCGCGGGCCGGCCATGGACATGTGGAGCGCGGGCACTACTATGTAT
GAGCTCTACACGGCCCGGGTGCTCTTCCCCGGCCGGCACAACAACGAGGT
GCTTCGACAAATGATGGAAGTGAGGGGTCCGTTCTCGCGGAAGTTGCTAA
AAAAGGCCAGCCCAGGGCTCAGGAGCCAACAtttcgacgaggagggcatg
tTCCTGGCGCGTGAATTGGACAAGGGGAGTCAAGTGGAAAGCGTGCGGGC
ActaccccctcccacgggcCCAAGTAGGCAATTAGGGGAGATGCTCTGCT
CCCCCAAGATCATGGCCAGAATGCCGTCACAAACTCGGCAACAGGTCGAG
CTTTTGCGTGGTTTTTTGGAGCAAGCTTTAGTCTTGGACCCAGCCAAGCG
AGCGAGACCCGTCCAGGCGCTCCAACTTttcaagggaagagggagcggag
ggaaaaagtgaATGCGGAGGGGTACTTGGCCCATAGGGTGGGCGaggtcc
tccacggccggtacgaagGGCGCGGCCTTGGCGCCCGCCTCGATCACGCC
GGACTTGGGTTTCGCTTTTGGAGAAGAAAAATCGCACTGCCTGCTCTACG
GCGAGGCTGAGCCGCGCCTTCCCCCACTAGGGAGGCCGGACGCCTTGGGC
CCGTCGTCCCATTTGGGGTGCCACACGCTCACTTCTGCCTTGTGCTGCCC
TGCCTGCATCCTCGGCGTCAAGGGACGCGGTGTCTTCAGCTCCGTCCTCG
TGGCCCACGACACGCAAGCCGtccccacctctcccctcggGCCCTCGCCC
AGGACGGTGGCCATCAAGGTCTTGCGGGGCAACGACTTGATGTTGCAGGC
AGGCCTGAAAGAGGCGGCACTCCTCCGCGCCCTGACAGAAGGGGAcaaga
gggacgaggggcaCGTGGTTCGCTTTCACGAGGAGTTCAGGCTGGGGGGT
CACGTGTGcgtggtgatggaggcgatgcACCTGAACCTGAGGAAGCTTTT
GAAGACCTATGGGCCCTCGCAGGGACTGGCCATCAAGGCCGTCCTTTCCT
ACGCGCAACAGCTGCTCGTCGGCCTGGCCTACCTGGAGCAGCAAGGCGTC
GCGCACGCTGACCTCAAGCCCGACAATTTAGTCGTGGATACCTCCATGTC
CGTCTTGAAGATCTGCGACTTCGGCTCGGCGCTCCACACCAACGAgctgg
gagggaacgaggcagaggaggcagctACTAGCACGCCGTACCTGCAATCA
CGCTTCTATCGGGCCCCCGAGGTGATACTGGGGTACCCGCCCCGCGGGCC
GGCCATGGACATGTGGAGCGCGGGCACTACTATGTATGAGCTCTACACGG
CCCGGGTGCTCTTCCCCGGCCGGCACAACAACGAGGTGCTTCGACAAATG
ATGGAAGTGAGGGGTCCGTTCTCGCGGAAGTTGCTAAAAAAGGCCAGCCC
AGGGCTCAGGAGCCAACAtttcgacgaggagggcatgtTCCTGGCGCGTG
AATTGGACAAGGGGAGTCAAGTGGAAAGCGTGCGGGCActaccccctccc
acgggcCCAAGTAGGCAATTAGGGGAGATGCTCTGCTCCCCCAAGATCAT
GGCCAGAATGCCGTCACAAACTCGGCAACAGGTCGAGCTTTTGCGTGGTT
TTTTGGAGCAAGCTTTAGTCTTGGACCCAGCCAAGCGAGCGAGACCCGTC
CAGGCGCTCCAACTTttcaagggaagagggagcggagggaaaaagtga

Synonyms

Publications