rna888, rna888 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna888
Unique Name	rna888
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1618
Alignment location	CM002456.1:649953..652475 +

Link to JBrowse

Properties


Property Name	Value
Product	Pleckstrin like protein
Orig transcript id	gnl\|cribi\|Naga_100017g84.292.mrna
Orig protein id	gnl\|cribi\|Naga_100017g84.292
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:649953..652475 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100017g84	gene851	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna888	rna888-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29794.1	cds888	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:649953..652475+
coding sequence from alignment at CM002456.1:649953..652475+

mRNA sequence

>rna888 ID=rna888|Name=rna888|organism=Nannochloropsis gaditana|type=mRNA|length=1618bp
TCTGAGACAAGCAGTTTCCAGACTCTTTTTTTCGCAAGGAAGCGCACTCT
ATATGATTATTGGTACCATGTTTTGTTAGGAAATGGCATTCCAAGGACGG
AAAGATGCTGGGAGGAGATAGTCGCCGGCGGGGTTGCTTGAGCATTTGAT
CTTTCCGAGGCCAACTGCTGCTCCTATCCTCCTTCCTTCTCACTATGTCT
CAATATTTCCTTTATTTCTCCAACTTCTTTCCTCTAAATTTTGCGCACGG
TGCGTGCGCTCGCAATTTACTTGCGCAGTGCATTTTATGCGACTGGTGGC
AATGCCAGCCTCCTCAGTCCCCTTTTTTTCTTGGAAGAACCCTGTATGCC
ATGTTCGACCATCCTCTTGGTGGAGATCTTCCTGCCACAATGCTTTCACG
TGCGATTTTTTTGCCCTTTTTGAAGGTGTTCTCGGTTTTCTATCTTTATG
GAGAGTGCTCGACAGTGACATGCCAATATTTCACGCATGTGTTATTTCTT
TAAGCATGCTTCGCCATGTTCCATCCTTCAGGCGTGTGCCCCTGTTTTCC
GCATCGCGACCTGGAGGCTGCAACCTATAAAGTACTGGAAAACCTCAGAG
AAAGACTGGTAACCTCCTTCAGGCCTTACCCTCGTTCATCCTCGGTACTA
AGTCGCTTCATCGACCCTCCCTTACTCCATCCCCAGATCGTACCTTCACG
TAACAACCTCCCACCCGACTTACCACAAGCATGCGCTCTGTTGCCTTCAT
CGTCGCCACCACGGCAGCCATGTCTACTGCTTTTGTCCTCCCCTCTGCGC
CCAAGGCACCTCAGACCCAGCTGGCTGCGAAGAGCAAGGCCGTCCCTTTC
CTGGAAGCCCCCAAGGCCCTGGATGGCTCCCTTCCCGCGGACGTTGGCTT
CGACCCCCTGAACTTGTCGGACATCGATTTTGACTTCACCTACTTGATGG
TGCCTACCAAGTGGGACGAGTCTCGCACGGGGCTTTCGGCGCTCAAGTGG
TTCCGGGAGGCTGAGATCAAGCACGGGCGCTTTGCCATGCTTGCCGTCTT
GGGATGGGTGGCTGTGGACATGGGTCTGCGCCTTCCCGTGGCCAAGTACG
CGGGGTACAACGCCGTGCAGGCCCACGACGTGTTCGTGAAGAGCGGAGAC
ATGACGGTAGGGCTCCTGGCCATCGGCTTCCTGGAGGTGGTGATGGGCGC
AGGCATCTACGAAATGAGCAAAGGTTCTGATCGGGCGGCCGGCGACTTCA
GCTTCGACCCCTTGGGCCTGGGCAAGGACCCCGCCAAGTACGCACGCTAC
CAGGTGTCGGAAATCAAGAACGGGCGCCTGGCCATGCTTGCTTTCGGCGG
CATCGCTACGCAGGCTGTGCTGACCAACGGAGGCTTTCCTTACTACCAGT
AACTTATACCAGCTCACTTTAGTAATTTATTTTGATGAGAAGCGTGCATG
CAGCGCAAGCTGAAATGTGCAAAGCGTCCGCGCCCGGTGGGAAACCTGGG
ACATTCTATTGTAAAAGAAAAAAGAGGAGAAGCTCTCCTTCTCACCGCAG
CCTTGGACTAGAGTGTTTTTCGTGCAGCCTTACTTTGTTTGTAGCTCACA
TGACCACCGAGTCTACTG

protein sequence of rna888

>rna888-protein ID=rna888-protein|Name=rna888|organism=Nannochloropsis gaditana|type=polypeptide|length=740bp
MSLIVGVDKKDASGGIRSYRGRDLCEGGQRADTSSTGPTLNADRGKAADQ
DGEDKGFDLAASNYAFKRAAPPPVVTKAVPDVPILFQGWVVDERREDSKV
KRFLVLEGTTLTFYEDEKNTSPVVGQANVEKFHLCGESILDCVHSPDDIS
KLVLIVKCGGGAGALPSRNALHFSCENGQEKDEWIERIQETIESIKRRSE
HESMGVFPGYCSVLSTPTTRNGELCMQAGTPASETRRQVSALSSSSGGKC
AAFLPFSKATLQAFHQQEQPTREEIESSQIQKQTHTHETPPVPSSWALPT
QSSQKLHSPSPLAQTPPCSTSNTSFPQAVDGRYPSAGQQGPQGVHASPIA
FSSSQHATPWGKTAEEKSGQTLKEKGLTSIMEAFKPTFHLKADQAGSVHA
VDVETGTGMDQTTGAVLAATLQSLPTAAQEKREAAINHPQEASSKRRLTL
DALEELEGGKRRPVPDREDIISMQERKERVEEGMRRTSLCNLMNQPAGAD
RRITRAGVRCNTASQSRHGHRSYQGWVKMFRRKWFMVLLPPGKPVISSAE
PEEAVPLNCSQSGKDALPGVPHVARASDSMIVTGMEALPRLALYHSPKDL
QNHKPPKEMISLSADSIIDSRRLSTSINPSIATKSSGSKTSSSTKPCIDA
AESSFVDTQEPDTVIDILLTSSRTGLLKTYTIQCFSVEEENRWISELQQA
IGSLAGDEEYGNSPSLFNGLDGLSHELCEHLMTHTCCILS

mRNA from alignment at CM002456.1:649953..652475+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna888 ID=rna888|Name=rna888|organism=Nannochloropsis gaditana|type=mRNA|length=2523bp|location=Sequence derived from alignment at CM002456.1:649953..652475+ (Nannochloropsis gaditana)
ATGTCCTTAATAGTTGGCGTCGATAAGAAAGACGCCAGCGGAGGAATTCG
CAGCTATAGAGGACGTGATCTttgtgaaggaggacagcgtGCGGACACTT
CTTCCACAGGGCCGACATTGAACGCAGACCGTGGAAAGGCTGCTGATCAA
GAcggggaagacaagggctTTGACCTCGCAGCAAGTAATTACGCCTTCAA
ACGTGCTGCTCCGCCACCGGTTGTCACGAAGGCGGTGCCCGACGTCCCCA
TTCTCTTCCAAGGATGGGTAGTAGatgagcggagggaggactcaAAAGTG
AAAAGGTGCGTCGAGACAATTTCCTGTTTTGAAGCGATTTATTTAAACGA
TCCCTCTCAATTAATGTTCCTGCTCTCTGGAAATCTTTGCGTGCTATTAA
TCGCCAGCTTACACACAATTCCAGGTTTCTTGTGCTAGAAGGCACGACGT
TGACTTTCTACGAAGATGAGAAAAACACGAGCCCCGTGGTCGGCCAGGCA
AACGTTGAAAAGTTCCATCTTTGTGGGGAATCCATTTTGGACTGTGTTCA
CTCGCCTGATGACATAAGTAAGCTTGTCCTAATCGTAAAATGTGGcggcg
gggcaggagctTTGCCTAGTCGTAATGCCCTTCATTTCTCTTGTGAAAAT
GggcaggaaaaagacgagtgGATCGAGCGGATCCAGGAGACAATCGAATC
CATCAAGCGACGCAGTGAGCATGAGTCTATGGGAGTCTTTCCCGGGTACT
GCTCGGTCCTGTCAACTCCCACAACACGCAACGGCGAGCTGTGCATGCAG
GCAGGGACTCCCGCGTCAGAGACGCGACGGCAAGTGTCAGCCctatcttc
ttcttcaggtGGCAAATGTGCCGCCTTTTTACCCTTTTCAAAGGCAACAT
TGCAAGCTTTTCATCAGCAAGAGCAGCCAACGCGTGAAGAAATAGAATCA
AGTCAAATACAAAAGCAGACGCATACCCATGAAACCCCTCCTGTCCCATC
ATCTTGGGCTCTCCCCACCCAGTCGTCCCAAAAATTGCATTCACCTTCAC
CTTTGGCGCAAACCCCACCTTGCAGCACGAGTAATACGTCGTTTCCGCAG
GCCGTCGATGGAAGATACCCCTCGGCGGGGCAGCAAGGGCCGCAGGGTGT
GCATGCGTCACCtattgccttttcctcctcccaacatGCTACCCCTTGGG
GGAAAACTGCCGAAGAGAAATCGGGACAAACTCTGAAAGAAAAGGGTCTT
ACAAGTATCATGGAGGCTTTTAAACCCACCTTTCACCTTAAGGCCGACCA
GGCTGGCTCTGTGCATGCAGTCGACGTCGAGACAGGGACTGGGATGGACC
AGACCACGGGGGCTGTCCTGGCCGCAACGCTCCAGAGCCTGCCTACTGCC
GcgcaggaaaagagagaagcaGCCATCAATCATCCACAAGAGGCGTCCTC
AAAGAGGAGGCTTACACTGGATGCCCTGGAAGAGCTCGAAGGGGGGAAAC
GCCGGCCCGTCCCGGATCGAGAGGACATCATCAGCATGCAAGAGCGGAAG
GAGCGCGTGGAAGAAGGCATGCGACGGACTTCGCTTTGTAATTTGATGAA
CCAACCGGCAGGAGCGGATAGGAGAATTACAAGGGCAGGGGTTCGTTGCA
ATACCGCGAGTCAATCGCGACACGGCCATCGAAGCTACCAAGGCTGGGTG
AAGATGTTCCGGCGCAAGTGGTTCATGGTCTTGTTGCCTCCAGGGAAGCC
TGTGATAAGCAGTGCGGAGCCCGAGGAAGCCGTACCACTTAATTGCTCAC
AATCAGGAAAGGATGCGTTGCCTGGAGTACCTCACGTAGCACGAGCGTCC
GACTCAATGATAGTGACAGGAATGGAGGCACTACCTCGTCTCGCATTATA
CCATAGTCCGAAAGACCTACAAAACCACAAGCCTCCCAAAGAAATGATAA
GTTTATCTGCTGATTCCATCATAGACTCTCGCAGGTTATCTACATCTATC
AACCCTAGTATCGCCACAAAGAGCAGCGGGAGCAAGACTTCGTCTTCTAC
AAAACCATGTATCGACGCCGCGGAGTCCTCGTTTGTCGACACGCAGGAGC
CGGACACCGTGATCGACATTTTACTAACAAGCAGTCGAACAGGATTGCTT
AAAACCTACACCATTCAGTGCTTTTctgtcgaggaggaaaatcgATGGAT
TTCAGAGCTTCAGCAAGCAATTGGCTCGCTGGCAGGCGATGAGGAATACG
GAAACAGTCCGAGTCTCTTCAACGGTCTGGATGGCCTTTCCCACGAGCTC
TGTGAACACCTTATGACCCATACGTGCTGCATACTTTCATAACTGATAGT
TTCAAAATTGATATTGCCGCGCATGCGCATTCCTGCGCGCAAAATTATCA
GTTTCTCCATTTTTTGTCTGCAAATTTCTGTGCCACAATTGCATCTTTCA
AGCTTCGGTAAGAAGTTTCATGCATTTGATAAATTTTAATTTTTAAAGAA
ACACACAAAGTTTTTCAATGATA

Coding sequence (CDS) from alignment at CM002456.1:649953..652475+

>rna888 ID=rna888|Name=rna888|organism=Nannochloropsis gaditana|type=CDS|length=4446bp|location=Sequence derived from alignment at CM002456.1:649953..652475+ (Nannochloropsis gaditana)
ATGTCCTTAATAGTTGGCGTCGATAAGAAAGACGCCAGCGGAGGAATTCG
CAGCTATAGAGGACGTGATCTttgtgaaggaggacagcgtGCGGACACTT
CTTCCACAGGGCCGACATTGAACGCAGACCGTGGAAAGGCTGCTGATCAA
GAcggggaagacaagggctTTGACCTCGCAGCAAGTAATTACGCCTTCAA
ACGTGCTGCTCCGCCACCGGTTGTCACGAAGGCGGTGCCCGACGTCCCCA
TTCTCTTCCAAGGATGGGTAGTAGatgagcggagggaggactcaAAAGTG
AAAAGGTTTCTTGTGCTAGAAGGCACGACGTTGACTTTCTACGAAGATGA
GAAAAACACGAGCCCCGTGGTCGGCCAGGCAAACGTTGAAAAGTTCCATC
TTTGTGGGGAATCCATTTTGGACTGTGTTCACTCGCCTGATGACATAAGT
AAGCTTGTCCTAATCGTAAAATGTGGcggcggggcaggagctTTGCCTAG
TCGTAATGCCCTTCATTTCTCTTGTGAAAATGggcaggaaaaagacgagt
gGATCGAGCGGATCCAGGAGACAATCGAATCCATCAAGCGACGCAGTGAG
CATGAGTCTATGGGAGTCTTTCCCGGGTACTGCTCGGTCCTGTCAACTCC
CACAACACGCAACGGCGAGCTGTGCATGCAGGCAGGGACTCCCGCGTCAG
AGACGCGACGGCAAGTGTCAGCCctatcttcttcttcaggtGGCAAATGT
GCCGCCTTTTTACCCTTTTCAAAGGCAACATTGCAAGCTTTTCATCAGCA
AGAGCAGCCAACGCGTGAAGAAATAGAATCAAGTCAAATACAAAAGCAGA
CGCATACCCATGAAACCCCTCCTGTCCCATCATCTTGGGCTCTCCCCACC
CAGTCGTCCCAAAAATTGCATTCACCTTCACCTTTGGCGCAAACCCCACC
TTGCAGCACGAGTAATACGTCGTTTCCGCAGGCCGTCGATGGAAGATACC
CCTCGGCGGGGCAGCAAGGGCCGCAGGGTGTGCATGCGTCACCtattgcc
ttttcctcctcccaacatGCTACCCCTTGGGGGAAAACTGCCGAAGAGAA
ATCGGGACAAACTCTGAAAGAAAAGGGTCTTACAAGTATCATGGAGGCTT
TTAAACCCACCTTTCACCTTAAGGCCGACCAGGCTGGCTCTGTGCATGCA
GTCGACGTCGAGACAGGGACTGGGATGGACCAGACCACGGGGGCTGTCCT
GGCCGCAACGCTCCAGAGCCTGCCTACTGCCGcgcaggaaaagagagaag
caGCCATCAATCATCCACAAGAGGCGTCCTCAAAGAGGAGGCTTACACTG
GATGCCCTGGAAGAGCTCGAAGGGGGGAAACGCCGGCCCGTCCCGGATCG
AGAGGACATCATCAGCATGCAAGAGCGGAAGGAGCGCGTGGAAGAAGGCA
TGCGACGGACTTCGCTTTGTAATTTGATGAACCAACCGGCAGGAGCGGAT
AGGAGAATTACAAGGGCAGGGGTTCGTTGCAATACCGCGAGTCAATCGCG
ACACGGCCATCGAAGCTACCAAGGCTGGGTGAAGATGTTCCGGCGCAAGT
GGTTCATGGTCTTGTTGCCTCCAGGGAAGCCTGTGATAAGCAGTGCGGAG
CCCGAGGAAGCCGTACCACTTAATTGCTCACAATCAGGAAAGGATGCGTT
GCCTGGAGTACCTCACGTAGCACGAGCGTCCGACTCAATGATAGTGACAG
GAATGGAGGCACTACCTCGTCTCGCATTATACCATAGTCCGAAAGACCTA
CAAAACCACAAGCCTCCCAAAGAAATGATAAGTTTATCTGCTGATTCCAT
CATAGACTCTCGCAGGTTATCTACATCTATCAACCCTAGTATCGCCACAA
AGAGCAGCGGGAGCAAGACTTCGTCTTCTACAAAACCATGTATCGACGCC
GCGGAGTCCTCGTTTGTCGACACGCAGGAGCCGGACACCGTGATCGACAT
TTTACTAACAAGCAGTCGAACAGGATTGCTTAAAACCTACACCATTCAGT
GCTTTTctgtcgaggaggaaaatcgATGGATTTCAGAGCTTCAGCAAGCA
ATTGGCTCGCTGGCAGGCGATGAGGAATACGGAAACAGTCCGAGTCTCTT
CAACGGTCTGGATGGCCTTTCCCACGAGCTCTGTGAACACCTTATGACCC
ATACGTGCTGCATACTTTCATAAATGTCCTTAATAGTTGGCGTCGATAAG
AAAGACGCCAGCGGAGGAATTCGCAGCTATAGAGGACGTGATCTttgtga
aggaggacagcgtGCGGACACTTCTTCCACAGGGCCGACATTGAACGCAG
ACCGTGGAAAGGCTGCTGATCAAGAcggggaagacaagggctTTGACCTC
GCAGCAAGTAATTACGCCTTCAAACGTGCTGCTCCGCCACCGGTTGTCAC
GAAGGCGGTGCCCGACGTCCCCATTCTCTTCCAAGGATGGGTAGTAGatg
agcggagggaggactcaAAAGTGAAAAGGTTTCTTGTGCTAGAAGGCACG
ACGTTGACTTTCTACGAAGATGAGAAAAACACGAGCCCCGTGGTCGGCCA
GGCAAACGTTGAAAAGTTCCATCTTTGTGGGGAATCCATTTTGGACTGTG
TTCACTCGCCTGATGACATAAGTAAGCTTGTCCTAATCGTAAAATGTGGc
ggcggggcaggagctTTGCCTAGTCGTAATGCCCTTCATTTCTCTTGTGA
AAATGggcaggaaaaagacgagtgGATCGAGCGGATCCAGGAGACAATCG
AATCCATCAAGCGACGCAGTGAGCATGAGTCTATGGGAGTCTTTCCCGGG
TACTGCTCGGTCCTGTCAACTCCCACAACACGCAACGGCGAGCTGTGCAT
GCAGGCAGGGACTCCCGCGTCAGAGACGCGACGGCAAGTGTCAGCCctat
cttcttcttcaggtGGCAAATGTGCCGCCTTTTTACCCTTTTCAAAGGCA
ACATTGCAAGCTTTTCATCAGCAAGAGCAGCCAACGCGTGAAGAAATAGA
ATCAAGTCAAATACAAAAGCAGACGCATACCCATGAAACCCCTCCTGTCC
CATCATCTTGGGCTCTCCCCACCCAGTCGTCCCAAAAATTGCATTCACCT
TCACCTTTGGCGCAAACCCCACCTTGCAGCACGAGTAATACGTCGTTTCC
GCAGGCCGTCGATGGAAGATACCCCTCGGCGGGGCAGCAAGGGCCGCAGG
GTGTGCATGCGTCACCtattgccttttcctcctcccaacatGCTACCCCT
TGGGGGAAAACTGCCGAAGAGAAATCGGGACAAACTCTGAAAGAAAAGGG
TCTTACAAGTATCATGGAGGCTTTTAAACCCACCTTTCACCTTAAGGCCG
ACCAGGCTGGCTCTGTGCATGCAGTCGACGTCGAGACAGGGACTGGGATG
GACCAGACCACGGGGGCTGTCCTGGCCGCAACGCTCCAGAGCCTGCCTAC
TGCCGcgcaggaaaagagagaagcaGCCATCAATCATCCACAAGAGGCGT
CCTCAAAGAGGAGGCTTACACTGGATGCCCTGGAAGAGCTCGAAGGGGGG
AAACGCCGGCCCGTCCCGGATCGAGAGGACATCATCAGCATGCAAGAGCG
GAAGGAGCGCGTGGAAGAAGGCATGCGACGGACTTCGCTTTGTAATTTGA
TGAACCAACCGGCAGGAGCGGATAGGAGAATTACAAGGGCAGGGGTTCGT
TGCAATACCGCGAGTCAATCGCGACACGGCCATCGAAGCTACCAAGGCTG
GGTGAAGATGTTCCGGCGCAAGTGGTTCATGGTCTTGTTGCCTCCAGGGA
AGCCTGTGATAAGCAGTGCGGAGCCCGAGGAAGCCGTACCACTTAATTGC
TCACAATCAGGAAAGGATGCGTTGCCTGGAGTACCTCACGTAGCACGAGC
GTCCGACTCAATGATAGTGACAGGAATGGAGGCACTACCTCGTCTCGCAT
TATACCATAGTCCGAAAGACCTACAAAACCACAAGCCTCCCAAAGAAATG
ATAAGTTTATCTGCTGATTCCATCATAGACTCTCGCAGGTTATCTACATC
TATCAACCCTAGTATCGCCACAAAGAGCAGCGGGAGCAAGACTTCGTCTT
CTACAAAACCATGTATCGACGCCGCGGAGTCCTCGTTTGTCGACACGCAG
GAGCCGGACACCGTGATCGACATTTTACTAACAAGCAGTCGAACAGGATT
GCTTAAAACCTACACCATTCAGTGCTTTTctgtcgaggaggaaaatcgAT
GGATTTCAGAGCTTCAGCAAGCAATTGGCTCGCTGGCAGGCGATGAGGAA
TACGGAAACAGTCCGAGTCTCTTCAACGGTCTGGATGGCCTTTCCCACGA
GCTCTGTGAACACCTTATGACCCATACGTGCTGCATACTTTCATAA

Synonyms

Publications