rna8877, rna8877 (mRNA) Nannochloropsis gaditana

Overview
Namerna8877
Unique Namerna8877
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1031
Alignment locationKK037250.1:372674..375148 -

Link to JBrowse

Properties
Property NameValue
Productarabinose 5-phosphate isomerase
Orig transcript idgnl|cribi|Naga_100051g33.8874.mrna
Orig protein idgnl|cribi|Naga_100051g33.8874
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:372674..375148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100051g33gene8607Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21835.1cds8847Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8877rna8877-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8877 ID=rna8877|Name=rna8877|organism=Nannochloropsis gaditana|type=mRNA|length=1031bp
CATGACGCTACTGCACTCGCCGTGTGTTTTCCGTGACTCCTCTGTGATTT
CATGAGTCTGACATTATGAAGCGACACGATGCTGACTCGATTTTTTCTGT
CTTGTCAAGGAGCAGCTCGTGGCCATGGCGACATGTTATCCTACGACCCG
TCGGCCCGATTTTTTGATCTTATGGCAGGCTAGTGCCCTTCTCCTCCTGG
CGTCCTTCATTCACACCAGCCAAGGCTTCGTTTTGGTGCCGCAACGACCT
GCTGCCGCGCCACGAGCTCTTCGACCCCAGTACGCCATTAGGGTGTCGCG
CGTGACCAATCCCGCCGAGGCTGAGGGAATTAGCGAATTTTTTGTGTCCT
CGTTTTGGGACACGCCCATTACCAAGCCCCGACAAAGGGAGCAGCTGAAG
AGCGAAGTCTATCGCGACCTGACCGCGCGGTACATTTGCGGTGCTGGTAA
AAGCGGCGCGTCATCGCCAGCAGGGTCCAGGATGGGAGCTGCTCGAGGCA
AATCGGCGCTATTGGTGGCCAAAGAAGGAGGAAAAGTGGTGGGTTGCGGA
GGACTGGAGACACGCGTGATTCGAGAGGGTCTGGTGACCAAATACGAGGT
GGTGAAGAGGGGAGACCCCCCCGGCACCTGCTTAGGCCCTGTGCTGGCAA
ACCTGGCGGTGGACCGGACCTTGCGGCGAAAAGGCGTCGGGAAGAAGATC
CTGATGGAATGCGAGCGCGTGGTGAAAGGCTGGGGCTTCCAGGAAGTGTG
GCTTGTGGTGGACGAGAAGAACAAGCCAGCTCGGGCGCTGTACGAGAAAA
ATGGGTACGAGCTGATGGCGCGAGATCCTCGTGGGATGAAGGTGGTACCG
ACGGAGTGGCAACTCAAGGAGATGCCCGTCACGAATTTGTGCATGCGCAA
AGATTTGCGGAAAGGGAAGGGGGGGGGAGGGGCGGGATTGGGTGAGTTCT
TTGCAGGGCTTCTGGGAGGGCAAAGGTGAGTCAGACCCTAACCCTAACCC
TAAAAGTATGGAAACTGAAGAACAAAGTAAG
back to top

protein sequence of rna8877

>rna8877-protein ID=rna8877-protein|Name=rna8877|organism=Nannochloropsis gaditana|type=polypeptide|length=631bp
MAASRAAAALQPRGPTSKLVLGCGSNVVDKFYPIRRWPKEGTKGYFLDES
ICSARVVGGVTLNHLVWARALGTPTGLLALQGTDENGVAIRQTLDDVGVD
TSAIRVSEKFSTSLSHIFPSPGAERTILMAPASTANLDAKTMELEFGSVI
RRRASMITTEISQVPLSGVLFLLHAARDAGFPSLLDVDISPEVALGPAQL
GSSAELIECVTSASMVKLTAEAAEEVLGLVNPKLNGQTERSLEGLAQQLA
EALHARLCVVTDGSRGLALALGRRKAQDQTSGSGGRRKAVHPVLVPGLKG
ISLVDFTGAGDAAFGAMVASLHAQGFPETADGLLSMGKVAAAAGAACVEV
KGALPHPQKSVARVLQLAPEAQPLADAAALLDMGVSPSPDSTLSEAATAL
VAGVKQRSPSVQAYARSLEEDVRALRTLSAGLALHEKEDTIARVVELLAA
AHTTTSKKTHIYTSGIGKSGLVAARLASSLRSISIRSSHVPATEFVHGDL
GSLSRGDVLVCLSTSGRTSELIDVTRRVRAKGVDVIAMTANAASPLAQLA
DVHLHAKSAEPLGKVPARSIVVQEAVSNAIISAIAQATSLTMAQFLDNHP
GGSIGQSSLATPSSTTTAPAARASSSSPSPP
back to top

mRNA from alignment at KK037250.1:372674..375148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8877 ID=rna8877|Name=rna8877|organism=Nannochloropsis gaditana|type=mRNA|length=2475bp|location=Sequence derived from alignment at KK037250.1:372674..375148- (Nannochloropsis gaditana)
ACATCAAACATTGACTCACCTTCAAGGTAGGCAGCGCCTGTAGCTCTACC
ATGGCCCGCCGGTTCTCTATACTTGATACAGGCCTATGATTGTGTGTTTT
GCAACCGAGTTGTGTGAGTCCAGGGAGCCAGCTACTTCTTGTTCTCGCTC
CAAGCAGAGAGCTCAAGCCGTCTCACGGTGATGAAAGGTCCGTTGCGGAT
ATTCATTTTTCTAAAAGGGGGAGAAATGGAGGAATGGCTGGCTCGTAAGA
CGGGACCAGCTACAGAGCAGCACAGCTTAATTAAAGCCCTTCATATTTGC
ACAGTGCTGCATTTTTCCCGGGAGTATGGCTTTGGCCTTGCGCACAGCCC
TGCATGCATCATAAGTGTTGGTCGTGGCCAAATCTTTGCCATGTCGTGTA
TCAAATTGCCGCCCAAAGCGACAGCACGGAAGAATTGAATCTCTCACTGT
ACATAACAGGGAAACTATTTCGTGACTTTGGACATGGCGGCGTCCCGCGC
CGCTGCTGCATTGCAGCCTCGCGGGCCTACGAGCAAGCTAGTGCTAGGGT
GTGGATCAAATGTAGTAGACAAATTCTATCCGATTCGTAGGTGGCCCAAG
GAAGGGACGAAAGGCTACTTTTTGGACGAAAGTATCTGTAGCGCCCGGGT
CGTGGGAGGTGTCACACTGAATCACCTCGTTTGGGCTCGTGCCTTGGGCA
CGCCCACTGGATTGTTGGCCCTACAGGGAACGGATGAGAATGGTGTGGCG
ATCAGGCAGACGTTGGACGACGTAGGTGTGGACACAAGCGCCATAAGGGT
CAGTGAGAAGTTTTCTACCAGCTTAAGCCACATCTTCCCTTCTCCAGGGG
CCGAACGGACGATCTTGATGGCCCCCGCATCCACTGCAAATTTAGACGCG
AAGACAATGGAGCTCGAATTTGGCTCGGTCATCCGGCGCCGCGCGAGCAT
GATCACAACCGAGATCTCTCAAGTGCCCCTCTCAGGTGTGCTCTTCTTGC
TGCACGCCGCGCGGGACGCGGGCTTTCCATCCTTGTTGGACGTGGACATC
AGTCCGGAAGTCGCCCTCGGGCCCGCGCAATTGGGCTCGTCGGCAGAGCT
GATAGAATGCGTCACCTCCGCATCCATGGTCAAGCTGACCGCGGAAGCTG
CAGAAGAGGTGTTAGGCCTGGTAAACCCTAAGCTGAACGGACAGACAGAG
CGAAGCTTGGAAGGGCTGGCGCAGCAATTGGCGGAGGCTTTGCATGCGCG
CTTGTGCGTGGTGACGGATGGGAGCCGAGGTCTCGCGCTGGCCTTGGGCC
GGAGGAAGGCCCAGGATCAAACCTCAGGATCCGGGGGTAGAAGGAAGGCT
GTGCATCCCGTATTGGTGCCGGGGCTTAAAGGCATCTCCTTGGTCGACTT
TACGGGGGCGGGCGACGCGGCTTTTGGTGCAATGGTGGCAAGTTTGCACG
CCCAAGGCTTTCCGGAGACTGCCGACGGCCTTCTGTCCATGGGGAAAGTA
GCGGCGGCTGCAGGTGCTGCGTGCGTGGAGGTGAAAGGTGCGTTGCCCCA
CCCCCAAAAGAGCGTCGCGCGTGTCCTGCAGTTGGCCCCAGAAGCCCAGC
CTCTGGCGGACGCGGCGGCTTTGCTAGACATGGGCGTGAGTCCATCTCCC
GATTCCACCCTGTCCGAGGCCGCGACGGCCCTTGTGGCAGGGGTCAAGCA
ACGGTCTCCCAGCGTTCAAGCCTACGCGCGAAGCCTGGAGGAGGACGTGC
GGGCCCTGAGGACGTTGAGCGCCGGCCTTGCCTTGCACGAGAAGGAGGAC
ACGATCGCACGCGTCGTCGAACTGCTGGCGGCCGCCCACACCACCACCTC
CAAAAAGACGCACATCTACACGAGCGGGATCGGCAAGAGCGGCCTGGTAG
CGGCCCGTCTGGCCTCCTCCTTGCGCTCCATTTCCATCCGGAGCAGTCAC
GTGCCAGCCACCGAGTTCGTCCACGGGGACTTGGGCAGCCTGTCGCGAGG
CGACGTCCTGGTCTGCCTGAGCACGAGTGGAAGGACGAGCGAGCTCATCG
ACGTCACCCGGCGGGTCCGAGCCAAGGGCGTGGACGTGATTGCGATGACG
GCGAACGCGGCCTCTCCCTTGGCCCAGCTTGCGGACGTGCACCTGCATGC
CAAGAGCGCCGAGCCTCTGGGCAAGGTGCCCGCCCGCTCCATCGTCGTCC
AGGAGGCGGTGAGCAACGCGATCATCTCCGCGATCGCCCAAGCTACCTCC
CTGACCATGGCCCAGTTCTTGGACAACCACCCCGGGGGCAGCATCGGTCA
GTCCTCCTTAGCCACCCCTTCCTCCACCACCACAGCTCCCGCTGCTCGCG
CCTCCTCCTCCTCCCCATCCCCCCCCTAGCTCCTCTAAAAGCCTGTGCGG
CCTGGGCTGGTGGTGTAGTAGTTAAGGAAAAAAATCAAAGCTTGTAGCCC
GGACAGAGTCGGGCACGGTGCCACC
back to top

Coding sequence (CDS) from alignment at KK037250.1:372674..375148-

>rna8877 ID=rna8877|Name=rna8877|organism=Nannochloropsis gaditana|type=CDS|length=1896bp|location=Sequence derived from alignment at KK037250.1:372674..375148- (Nannochloropsis gaditana)
ATGGCGGCGTCCCGCGCCGCTGCTGCATTGCAGCCTCGCGGGCCTACGAG
CAAGCTAGTGCTAGGGTGTGGATCAAATGTAGTAGACAAATTCTATCCGA
TTCGTAGGTGGCCCAAGGAAGGGACGAAAGGCTACTTTTTGGACGAAAGT
ATCTGTAGCGCCCGGGTCGTGGGAGGTGTCACACTGAATCACCTCGTTTG
GGCTCGTGCCTTGGGCACGCCCACTGGATTGTTGGCCCTACAGGGAACGG
ATGAGAATGGTGTGGCGATCAGGCAGACGTTGGACGACGTAGGTGTGGAC
ACAAGCGCCATAAGGGTCAGTGAGAAGTTTTCTACCAGCTTAAGCCACAT
CTTCCCTTCTCCAGGGGCCGAACGGACGATCTTGATGGCCCCCGCATCCA
CTGCAAATTTAGACGCGAAGACAATGGAGCTCGAATTTGGCTCGGTCATC
CGGCGCCGCGCGAGCATGATCACAACCGAGATCTCTCAAGTGCCCCTCTC
AGGTGTGCTCTTCTTGCTGCACGCCGCGCGGGACGCGGGCTTTCCATCCT
TGTTGGACGTGGACATCAGTCCGGAAGTCGCCCTCGGGCCCGCGCAATTG
GGCTCGTCGGCAGAGCTGATAGAATGCGTCACCTCCGCATCCATGGTCAA
GCTGACCGCGGAAGCTGCAGAAGAGGTGTTAGGCCTGGTAAACCCTAAGC
TGAACGGACAGACAGAGCGAAGCTTGGAAGGGCTGGCGCAGCAATTGGCG
GAGGCTTTGCATGCGCGCTTGTGCGTGGTGACGGATGGGAGCCGAGGTCT
CGCGCTGGCCTTGGGCCGGAGGAAGGCCCAGGATCAAACCTCAGGATCCG
GGGGTAGAAGGAAGGCTGTGCATCCCGTATTGGTGCCGGGGCTTAAAGGC
ATCTCCTTGGTCGACTTTACGGGGGCGGGCGACGCGGCTTTTGGTGCAAT
GGTGGCAAGTTTGCACGCCCAAGGCTTTCCGGAGACTGCCGACGGCCTTC
TGTCCATGGGGAAAGTAGCGGCGGCTGCAGGTGCTGCGTGCGTGGAGGTG
AAAGGTGCGTTGCCCCACCCCCAAAAGAGCGTCGCGCGTGTCCTGCAGTT
GGCCCCAGAAGCCCAGCCTCTGGCGGACGCGGCGGCTTTGCTAGACATGG
GCGTGAGTCCATCTCCCGATTCCACCCTGTCCGAGGCCGCGACGGCCCTT
GTGGCAGGGGTCAAGCAACGGTCTCCCAGCGTTCAAGCCTACGCGCGAAG
CCTGGAGGAGGACGTGCGGGCCCTGAGGACGTTGAGCGCCGGCCTTGCCT
TGCACGAGAAGGAGGACACGATCGCACGCGTCGTCGAACTGCTGGCGGCC
GCCCACACCACCACCTCCAAAAAGACGCACATCTACACGAGCGGGATCGG
CAAGAGCGGCCTGGTAGCGGCCCGTCTGGCCTCCTCCTTGCGCTCCATTT
CCATCCGGAGCAGTCACGTGCCAGCCACCGAGTTCGTCCACGGGGACTTG
GGCAGCCTGTCGCGAGGCGACGTCCTGGTCTGCCTGAGCACGAGTGGAAG
GACGAGCGAGCTCATCGACGTCACCCGGCGGGTCCGAGCCAAGGGCGTGG
ACGTGATTGCGATGACGGCGAACGCGGCCTCTCCCTTGGCCCAGCTTGCG
GACGTGCACCTGCATGCCAAGAGCGCCGAGCCTCTGGGCAAGGTGCCCGC
CCGCTCCATCGTCGTCCAGGAGGCGGTGAGCAACGCGATCATCTCCGCGA
TCGCCCAAGCTACCTCCCTGACCATGGCCCAGTTCTTGGACAACCACCCC
GGGGGCAGCATCGGTCAGTCCTCCTTAGCCACCCCTTCCTCCACCACCAC
AGCTCCCGCTGCTCGCGCCTCCTCCTCCTCCCCATCCCCCCCCTAG
back to top
Synonyms
Publications