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Properties
| Property Name | Value |
|---|
| Product | light-harvesting protein |
| Orig transcript id | gnl|cribi|Naga_100017g83.289.mrna |
| Orig protein id | gnl|cribi|Naga_100017g83.289 |
| Gene | LHC26 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:647928..649545 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna887 ID=rna887|Name=rna887|organism=Nannochloropsis gaditana|type=mRNA|length=1469bp
GCCGCACTTTTTCCTGTACGTTGCCTCTGTTATCCATGACAGGTATGCAT
GATATGCTGAACATGGAAGATGCAAGGCAGACTATTTGGCGTTCTGGTGT
CAAATTTGTCGCTTTCCCGCACATGCAGGTGCAACCCATTTACCCGCGCA
GCACTCCACATATATGCCTAGGTCGTAACATTCCCGACATCGAGTTACGC
GTCGGAGACACGGGTAGCCGATGAAAATTGAGGAGAATGGAGTCTTCTCT
AGTCATTTCAAAGAAGGAAAAGACTCCGACGGCACATGTGTGGAGACACA
GCGGAATGTCTACCGCGACACTAATGCTGTCCCACGCAACTTTGACTCCA
CTACTCTGCATCTGGGGCTCAAGGAAGGCCAAATCGCCTCCCGCATACTT
ACAGTGGGCTGCCCAGGTCGCGCAGGCCTCATCGCAAAAGTATTGGATAA
ATCGTCTCCGATTTTTTCCCATACATCTCCACGTGGCTTTACCACGTATA
CTGGAACCTTCGAGAGAACAAGGGTATCAATTATCGCCATAGGCATGGGA
ATGCCTATGATGGATTTCCTGGTTCGTGAAGCTCGGCAGCTCGTGTCCAA
GCCTCTACTCATCACGCGATTCGGAACGTGTGGGGCGTTGTGTCCCGACG
TGGCTGTGGGGAGTGTGGTGGTGGCCTCTCCTGGGTCCGTCTCGGTCATG
CGGAACCCTGACGCCTTCCTGCCTCTTCCCACCCCGTCAGGCACTTCTGC
GGACGAGATAGATCCGATAGCCACCGGAGGCGCGCCGCATGTACGCCCCC
CTTATCTTGTCTTCGCGCCCCAGCTCGCCGACCCCGTCTTGACCCAGGCG
TTGTTGGGGGAGCTGAAGGAACAGTTGGGCTCCGAGCACGTCAGGCGTGG
CATGAATGTCTCTGCCTGCTCATTCTACTCCTCTCAAGGCCGAAGAGACG
CCTTTTTTGACGATCGGAACGAGGACTTGCTGGACGTGCTCCGGGAGCGT
CACCCCTCCCTCGCAAGCATGGAAATGGAGTCCTTCCAGCTATTAGCCCT
GGCCCGCGCCAGTCGCGAAAGTGTGCGAGCAGCGGCAGCGAGTATCGTGG
TAGCGAATCGTCCCACAGGAGACGTCTGCGATGAGGCAAGGCTCGCTTAC
TTGGAGCGCGCTGGAGGCGAGGCGATGGTCAGGGCGCTTGTCCGGTTCGA
AGATTGAGTGTGGGAACGTGCAGTGAAATCCGAAGGCGTGTTTGAGTGCG
AGCAGCTAGCACTGTGAATCTAAGGTGCTTCTTTCTGGATGTCCTGGGGC
AGGGGTTAGCAAGCAAATGATAGGGCCGGGTCGTTTTGGAGGGTGACAGA
TGTGACTGAGAATACGAAGGGTTGAAGCTCTATTTTTGATGCGAGACATA
TGAATAATCTTGTACAGTAGACTCGGTGGTCATGTGAGCTACAAACAAAG
TAAGGCTGCACGAAAAACA back to topprotein sequence of rna887 >rna887-protein ID=rna887-protein|Name=rna887|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MRSVAFIVATTAAMSTAFVLPSAPKAPQTQLAAKSKAVPFLEAPKALDGS
LPADVGFDPLNLSDIDFDFTYLMVPTKWDESRTGLSALKWFREAEIKHGR
FAMLAVLGWVAVDMGLRLPVAKYAGYNAVQAHDVFVKSGDMTVGLLAIGF
LEVVMGAGIYEMSKGSDRAAGDFSFDPLGLGKDPAKYARYQVSEIKNGRL
AMLAFGGIATQAVLTNGGFPYYQ back to topmRNA from alignment at CM002456.1:647928..649545- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna887 ID=rna887|Name=rna887|organism=Nannochloropsis gaditana|type=mRNA|length=1618bp|location=Sequence derived from alignment at CM002456.1:647928..649545- (Nannochloropsis gaditana)
TCTGAGACAAGCAGTTTCCAGACTCTTTTTTTCGCAAGGAAGCGCACTCT
ATATGATTATTGGTACCATGTTTTGTTAGGAAATGGCATTCCAAGGACGG
AAAGATGCTGGGAGGAGATAGTCGCCGGCGGGGTTGCTTGAGCATTTGAT
CTTTCCGAGGCCAACTGCTGCTCCTATCCTCCTTCCTTCTCACTATGTCT
CAATATTTCCTTTATTTCTCCAACTTCTTTCCTCTAAATTTTGCGCACGG
TGCGTGCGCTCGCAATTTACTTGCGCAGTGCATTTTATGCGACTGGTGGC
AATGCCAGCCTCCTCAGTCCCCTTTTTTTCTTGGAAGAACCCTGTATGCC
ATGTTCGACCATCCTCTTGGTGGAGATCTTCCTGCCACAATGCTTTCACG
TGCGATTTTTTTGCCCTTTTTGAAGGTGTTCTCGGTTTTCTATCTTTATG
GAGAGTGCTCGACAGTGACATGCCAATATTTCACGCATGTGTTATTTCTT
TAAGCATGCTTCGCCATGTTCCATCCTTCAGGCGTGTGCCCCTGTTTTCC
GCATCGCGACCTGGAGGCTGCAACCTATAAAGTACTGGAAAACCTCAGAG
AAAGACTGGTAACCTCCTTCAGGCCTTACCCTCGTTCATCCTCGGTACTA
AGTCGCTTCATCGACCCTCCCTTACTCCATCCCCAGATCGTACCTTCACG
TAACAACCTCCCACCCGACTTACCACAAGCATGCGCTCTGTTGCCTTCAT
CGTCGCCACCACGGCAGCCATGTCTACTGCTTTTGTCCTCCCCTCTGCGC
CCAAGGCACCTCAGACCCAGCTGGCTGCGAAGAGCAAGGCCGTCCCTTTC
CTGGAAGCCCCCAAGGCCCTGGATGGCTCCCTTCCCGCGGACGTTGGCTT
CGACCCCCTGAACTTGTCGGACATCGATTTTGACTTCACCTACTTGATGG
TGCCTACCAAGTGGGACGAGTCTCGCACGGGGCTTTCGGCGCTCAAGTGG
TTCCGGGAGGCTGAGATCAAGCACGGGCGCTTTGCCATGCTTGCCGTCTT
GGGATGGGTGGCTGTGGACATGGGTCTGCGCCTTCCCGTGGCCAAGTACG
CGGGGTACAACGCCGTGCAGGCCCACGACGTGTTCGTGAAGAGCGGAGAC
ATGACGGTAGGGCTCCTGGCCATCGGCTTCCTGGAGGTGGTGATGGGCGC
AGGCATCTACGAAATGAGCAAAGGTTCTGATCGGGCGGCCGGCGACTTCA
GCTTCGACCCCTTGGGCCTGGGCAAGGACCCCGCCAAGTACGCACGCTAC
CAGGTGTCGGAAATCAAGAACGGGCGCCTGGCCATGCTTGCTTTCGGCGG
CATCGCTACGCAGGCTGTGCTGACCAACGGAGGCTTTCCTTACTACCAGT
AACTTATACCAGCTCACTTTAGTAATTTATTTTGATGAGAAGCGTGCATG
CAGCGCAAGCTGAAATGTGCAAAGCGTCCGCGCCCGGTGGGAAACCTGGG
ACATTCTATTGTAAAAGAAAAAAGAGGAGAAGCTCTCCTTCTCACCGCAG
CCTTGGACTAGAGTGTTTTTCGTGCAGCCTTACTTTGTTTGTAGCTCACA
TGACCACCGAGTCTACTG back to topCoding sequence (CDS) from alignment at CM002456.1:647928..649545- >rna887 ID=rna887|Name=rna887|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002456.1:647928..649545- (Nannochloropsis gaditana)
ATGCGCTCTGTTGCCTTCATCGTCGCCACCACGGCAGCCATGTCTACTGC
TTTTGTCCTCCCCTCTGCGCCCAAGGCACCTCAGACCCAGCTGGCTGCGA
AGAGCAAGGCCGTCCCTTTCCTGGAAGCCCCCAAGGCCCTGGATGGCTCC
CTTCCCGCGGACGTTGGCTTCGACCCCCTGAACTTGTCGGACATCGATTT
TGACTTCACCTACTTGATGGTGCCTACCAAGTGGGACGAGTCTCGCACGG
GGCTTTCGGCGCTCAAGTGGTTCCGGGAGGCTGAGATCAAGCACGGGCGC
TTTGCCATGCTTGCCGTCTTGGGATGGGTGGCTGTGGACATGGGTCTGCG
CCTTCCCGTGGCCAAGTACGCGGGGTACAACGCCGTGCAGGCCCACGACG
TGTTCGTGAAGAGCGGAGACATGACGGTAGGGCTCCTGGCCATCGGCTTC
CTGGAGGTGGTGATGGGCGCAGGCATCTACGAAATGAGCAAAGGTTCTGA
TCGGGCGGCCGGCGACTTCAGCTTCGACCCCTTGGGCCTGGGCAAGGACC
CCGCCAAGTACGCACGCTACCAGGTGTCGGAAATCAAGAACGGGCGCCTG
GCCATGCTTGCTTTCGGCGGCATCGCTACGCAGGCTGTGCTGACCAACGG
AGGCTTTCCTTACTACCAGTAA back to top
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