rna8854, rna8854 (mRNA) Nannochloropsis gaditana

Overview
Namerna8854
Unique Namerna8854
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1404
Alignment locationKK037250.1:313018..314326 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100051g7.8887.mrna
Orig protein idgnl|cribi|Naga_100051g7.8887
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037250.1supercontigKK037250.1:313018..314326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100051g7gene8584Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna8854rna8854-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM21848.1cds8824Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna8854 ID=rna8854|Name=rna8854|organism=Nannochloropsis gaditana|type=mRNA|length=1404bp
ATGCAGAGGGCTCGGGACTTGGAGGCCGTGGTCGGGCAGACCTCCGCCGT
GGGGAGAGCCAAGGCGCAGGCCGGGGGGAAGACGAGGAAAGAGAAAGATG
AAACGGGGCCACAGTCGATGGCAAGCTCTGTCCTGCGTGGAGAAGAGGCG
TCGACGGTCGCCGGTTCCGGTCCCGTCGCCTTTTCGGGTGTCGCTTTTGA
CGCTCTTTCACCCTTGAGCCAGGGGGGGGAGATGACGGCGAGGGAGGAGG
CGCGGGAGGTGGAGCCCGTCAGGGAGGATGGAGAGGCTCGTAAAAGGAAG
AAGGATGAAAGTGAGAGTGAAAGAGGAGCACTACCACGTTCAGAGAGAGA
AGGAGAGGCAGGGAGAGGCGAGGGAGATGGGAAGGAAGAGATGCTCTCGG
AGGAGGGAAGTCTCGACACAGACAGTATCCTGGTGGCGGTGCCCAAACCC
CCCTCTCGGGTGGAGAACAAGAAGGGGGTGGGTGCAAAGGAAAGGGCTTC
ACGTGACTCCTCTCGTGTTGAGAAGGACAGGGCCCCGGAGTGTGAGGTCA
TGCCTTCTAAGGTTCTGTGCACGCCACCGGAGCGGCTCCGTTCCTCTCCC
ATTTCCGTTGTTTGTCCAGGCGGACGGGGGGGGGCACGGCGCCCAGAGCA
GCAGGCCCATCAGGTGCTGGGACAGGCGGCTGTGAGGGCCTCGGTATATC
GAGGGCGGGGCGGCTGGCAAGACGCGGCGGGGGGGGATGGGGAGGACAAC
GAGTTCATTGAGCGGGCGGGCCCTGGCCTGGAGGGGTCTCTGGCCTCAGA
GTCAACCTTGGTTTATCTCTCCCCAGAGGAGGAAAGAAGGATCTTCGAGC
AGCACCGGCGAGAGAAGGAATACTGGCGTCGGCGGTTTCAAAAGGAGGAA
GCGCCCCGCGAGGTCTCGCATGAAGGTGACGGCGATGTTAGCGTAAATGA
GGTGCTCAAGGGCAGTGACAGGCGGAGCGAAAGCAGGAGCAGTTTTGAAA
TTCATAGAAGTAGGAAAAGAGCGAGTGCGCCGACACTGTCTCCAGTGACG
CAATTGCTGGTGGAGGAAGTGGACGAGGTAGTTGCCGCAAGCCTCGAGGG
AGGAGAGCCTTTCAACGGCCTCGACACGGCACGGGAGGTTCAGTTCCACG
CAGTGGGAAACCGGCGGGAGGAAGAATCTCTTGCGGGGACGATCGGTGGG
AAGGCCGGAAACAGCATTGGGTCGGTAGCGGAGGGGTTGGAGGCGGCTTG
GGTAAAGACTGAAGGTGGATTCAGCTGTGGGCAGAATGGTCGATTGGCAG
GGGATAGAGAGGCGGAAGGGAGAGAGGATGGGGCGGCGCTTCGGGATATC
AGCAATATCGAGCATGATGGCTTAATTGACGCGGTGATCCGCAAAGGACC
TTGA
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protein sequence of rna8854

>rna8854-protein ID=rna8854-protein|Name=rna8854|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
MDLVGLRNGGGRRPSTRLNEGDTQSRRSGSGRGERSDLQPRLEPLVISEK
LSSSSAGNGSQSTSTGSKASPMDCTILPSLNTSRGSVSFPTPASNSQGNG
LSRSLSSASIMSSPLPPLVQTPHSNGAVSASFFTEDEEDSEEETSPHAKE
VMVALSRSKTKDTNLPLLVPSLGKGSRGADTDIPSNQKTSSALSAALRTS
ESS
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mRNA from alignment at KK037250.1:313018..314326-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna8854 ID=rna8854|Name=rna8854|organism=Nannochloropsis gaditana|type=mRNA|length=1309bp|location=Sequence derived from alignment at KK037250.1:313018..314326- (Nannochloropsis gaditana)
ATGGACCTTGTTGGCTTGCGGAATGGAGGGGGGAGGCGACCTTCTACGCG
CCTGAATGAAGGGGATACCCAGTCCAGGCGTTCCGGGAGCGGGCGAGGGG
AAAGAAGTGACTTACAGCCTCGACTGGAGCCCTTAGTGATTTCGGAAAAA
CTCTCGTCTTCCTCCGCCGGGAATGGTTCTCAAAGCACCAGCACGGGTAG
CAAAGCCTCCCCAATGGTACGTTTCCAGGTACCGATATCCTTTCTTTCTG
TGGATAAAGTCGAGCTCAACGGAACTCTCTTCTCCCTCCCGCGAATGGAT
AGGATTGCACGATTTTGCCCTCTCTCAACACTAGTCGAGGGAGTGTCAGT
TTTCCTACTCCGGCGAGCAACAGCCAGGGAAACGGCCTCTCACGCAGCCT
GAGCAGCGCAAGCATCATGTCCTCGCCTTTGCCGCCTCTCGTGCAGACCC
CCCACAGTAATGGGGCCGTGTCCGCGTCCTTCTTCACGGAGGACGAGGAG
GACTCCGAGGAGGAGACCAGTCCGCACGCTAAGGAAGTCATGGTGGCACT
GTCACGGTCCAAGACTAAAGACACGAATCTGCCGTTGCTGGTTCCTTCTC
TCGGAAAGGTAGAAATGCAGCGAGAAGGAGACGAAAGCTTTCTGGCGTCG
GAAGCTGAGGAGGAGGAGAATGAGGGAGAAAGTCGTGGAAGGGAGAGGAG
AAGGATGTTGCGACGGCGAGGTCGTGCGAAAGACGCGTCTTTTGAGGCCC
TGGTGCAAGCGGAGATGCGCCGCTTGAAGGCGAGGCTGGAGAGCAGGGCC
GAGCCGCGTGAGGGGTCGGCGATGCTGGCATCGACAGAGCCCGGCTCGCG
CCCGGACCTGGGGACCGTGGAGGGCGAGGACGAGCCGCCGGAAGGCCGAG
GTGCCCGGCATTTATCCGAGCTGGGTCGCCGCTCGCCAGTCCCTGGTCGA
ACCCCTTCCACCTCGCGCGTGCTCCCTCTGGCCGTGTCCACCGGCCGAGG
CCATCGCGCACCGCCCCTGGGGACGCCTTCCGACCCCTCTCCCTCCTCTC
TCTCCGCGCCTTTCTTGCCCCCTGTCACGGCCAAGAGGCTTCCGGTCATC
TCCCCTCGTTTGGAAAACGGCTCCAAGGCTTTCGGGCGTGGCCTGGCGTC
GCTCTACGCCTCTCCCGCCGACAAGGAGCAGCAGGCGGCGAAGCGTCGCG
CCCAACGCGACTATGCCAGGGCTCTCGAGGAGCAGATACTGACATCCCCT
CAAACCAGAAAACATCATCAGCACTATCAGCGGCGCTCCGAACCAGCGAG
TCGTCGTGA
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Coding sequence (CDS) from alignment at KK037250.1:313018..314326-

>rna8854 ID=rna8854|Name=rna8854|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at KK037250.1:313018..314326- (Nannochloropsis gaditana)
GGCTCTCGAGGAGCAGATACTGACATCCCCTCAAACCAGAAAACATCATC
AGCACTATCAGCGGCGCTCCGAACCAGCGAGTCGTCGTGAGATTGCACGA
TTTTGCCCTCTCTCAACACTAGTCGAGGGAGTGTCAGTTTTCCTACTCCG
GCGAGCAACAGCCAGGGAAACGGCCTCTCACGCAGCCTGAGCAGCGCAAG
CATCATGTCCTCGCCTTTGCCGCCTCTCGTGCAGACCCCCCACAGTAATG
GGGCCGTGTCCGCGTCCTTCTTCACGGAGGACGAGGAGGACTCCGAGGAG
GAGACCAGTCCGCACGCTAAGGAAGTCATGGTGGCACTGTCACGGTCCAA
GACTAAAGACACGAATCTGCCGTTGCTGGTTCCTTCTCTCGGAAAGATGG
ACCTTGTTGGCTTGCGGAATGGAGGGGGGAGGCGACCTTCTACGCGCCTG
AATGAAGGGGATACCCAGTCCAGGCGTTCCGGGAGCGGGCGAGGGGAAAG
AAGTGACTTACAGCCTCGACTGGAGCCCTTAGTGATTTCGGAAAAACTCT
CGTCTTCCTCCGCCGGGAATGGTTCTCAAAGCACCAGCACGGGTAGCAAA
GCCTCCCCAATGGGCTCTCGAGGAGCAGATACTGACATCCCCTCAAACCA
GAAAACATCATCAGCACTATCAGCGGCGCTCCGAACCAGCGAGTCGTCGT
GAGATTGCACGATTTTGCCCTCTCTCAACACTAGTCGAGGGAGTGTCAGT
TTTCCTACTCCGGCGAGCAACAGCCAGGGAAACGGCCTCTCACGCAGCCT
GAGCAGCGCAAGCATCATGTCCTCGCCTTTGCCGCCTCTCGTGCAGACCC
CCCACAGTAATGGGGCCGTGTCCGCGTCCTTCTTCACGGAGGACGAGGAG
GACTCCGAGGAGGAGACCAGTCCGCACGCTAAGGAAGTCATGGTGGCACT
GTCACGGTCCAAGACTAAAGACACGAATCTGCCGTTGCTGGTTCCTTCTC
TCGGAAAGATGGACCTTGTTGGCTTGCGGAATGGAGGGGGGAGGCGACCT
TCTACGCGCCTGAATGAAGGGGATACCCAGTCCAGGCGTTCCGGGAGCGG
GCGAGGGGAAAGAAGTGACTTACAGCCTCGACTGGAGCCCTTAGTGATTT
CGGAAAAACTCTCGTCTTCCTCCGCCGGGAATGGTTCTCAAAGCACCAGC
ACGGGTAGCAAAGCCTCCCCAATGGGCTCTCGAGGAGCAGATACTGACAT
CCCCTCAAACCAGAAAACATCATCAGCACTATCAGCGGCGCTCCGAACCA
GCGAGTCGTCGTGAGATTGCACGATTTTGCCCTCTCTCAACACTAGTCGA
GGGAGTGTCAGTTTTCCTACTCCGGCGAGCAACAGCCAGGGAAACGGCCT
CTCACGCAGCCTGAGCAGCGCAAGCATCATGTCCTCGCCTTTGCCGCCTC
TCGTGCAGACCCCCCACAGTAATGGGGCCGTGTCCGCGTCCTTCTTCACG
GAGGACGAGGAGGACTCCGAGGAGGAGACCAGTCCGCACGCTAAGGAAGT
CATGGTGGCACTGTCACGGTCCAAGACTAAAGACACGAATCTGCCGTTGC
TGGTTCCTTCTCTCGGAAAGATGGACCTTGTTGGCTTGCGGAATGGAGGG
GGGAGGCGACCTTCTACGCGCCTGAATGAAGGGGATACCCAGTCCAGGCG
TTCCGGGAGCGGGCGAGGGGAAAGAAGTGACTTACAGCCTCGACTGGAGC
CCTTAGTGATTTCGGAAAAACTCTCGTCTTCCTCCGCCGGGAATGGTTCT
CAAAGCACCAGCACGGGTAGCAAAGCCTCCCCAATG
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Synonyms
Publications